Strain Fitness in Sphingobium sp. HT1-2 around GFF3703

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,747,829	+				-1.1
3,747,832	-				+0.8
3,747,832	-				+1.3
3,747,834	+				-1.6
3,747,837	-				+0.8
3,747,837	-				-0.6
3,747,842	-				+0.3
3,747,842	-				+0.0
3,747,847	-				-0.6
3,747,883	+		GFF3702	0.11	+0.6
3,747,900	-		GFF3702	0.13	+0.2
3,747,924	-		GFF3702	0.15	-0.6
3,747,928	-		GFF3702	0.15	-1.4
3,747,961	-		GFF3702	0.18	-0.9
3,747,975	-		GFF3702	0.20	+0.5
3,747,976	-		GFF3702	0.20	-2.1
3,747,976	-		GFF3702	0.20	-1.4
3,747,976	-		GFF3702	0.20	+1.5
3,747,981	-		GFF3702	0.20	+0.1
3,748,005	+		GFF3702	0.23	-1.1
3,748,005	+		GFF3702	0.23	+0.2
3,748,005	+		GFF3702	0.23	+0.9
3,748,005	+		GFF3702	0.23	-0.0
3,748,005	+		GFF3702	0.23	+0.9
3,748,005	+		GFF3702	0.23	+0.0
3,748,005	+		GFF3702	0.23	-1.2
3,748,012	+		GFF3702	0.23	-0.9
3,748,013	-		GFF3702	0.23	-1.0
3,748,013	-		GFF3702	0.23	-0.0
3,748,013	-		GFF3702	0.23	+0.6
3,748,013	-		GFF3702	0.23	-0.7
3,748,013	-		GFF3702	0.23	-0.3
3,748,013	-		GFF3702	0.23	+1.5
3,748,013	-		GFF3702	0.23	-0.2
3,748,049	+		GFF3702	0.27	-0.2
3,748,049	+		GFF3702	0.27	-0.4
3,748,049	+		GFF3702	0.27	-0.8
3,748,084	+		GFF3702	0.30	+0.7
3,748,118	-		GFF3702	0.33	-0.2
3,748,131	+		GFF3702	0.35	-2.4
3,748,131	+		GFF3702	0.35	-0.7
3,748,136	+		GFF3702	0.35	-0.0
3,748,139	-		GFF3702	0.35	-1.1
3,748,147	+		GFF3702	0.36	-0.5
3,748,152	+		GFF3702	0.37	-0.9
3,748,155	-		GFF3702	0.37	+0.3
3,748,165	+		GFF3702	0.38	-0.5
3,748,165	+		GFF3702	0.38	-0.3
3,748,165	+		GFF3702	0.38	+0.3
3,748,165	+		GFF3702	0.38	+0.1
3,748,165	+		GFF3702	0.38	+0.6
3,748,165	+		GFF3702	0.38	-0.1
3,748,173	-		GFF3702	0.39	-0.6
3,748,173	-		GFF3702	0.39	+0.4
3,748,173	-		GFF3702	0.39	-0.2
3,748,178	-		GFF3702	0.39	+0.1
3,748,193	-		GFF3702	0.40	-0.2
3,748,195	-		GFF3702	0.41	+0.4
3,748,200	+		GFF3702	0.41	+0.1
3,748,204	+		GFF3702	0.41	+0.4
3,748,218	-		GFF3702	0.43	-0.6
3,748,219	-		GFF3702	0.43	+0.3
3,748,237	+		GFF3702	0.45	+0.2
3,748,243	-		GFF3702	0.45	+0.6
3,748,256	+		GFF3702	0.46	-1.2
3,748,258	-		GFF3702	0.47	+0.6
3,748,264	-		GFF3702	0.47	-0.2
3,748,271	+		GFF3702	0.48	-1.3
3,748,277	+		GFF3702	0.48	-0.0
3,748,286	+		GFF3702	0.49	-0.9
3,748,292	+		GFF3702	0.50	-0.3
3,748,319	-		GFF3702	0.52	+0.7
3,748,326	-		GFF3702	0.53	+0.5
3,748,326	-		GFF3702	0.53	-0.6
3,748,326	-		GFF3702	0.53	+0.9
3,748,331	-		GFF3702	0.54	-0.4
3,748,355	-		GFF3702	0.56	+0.2
3,748,362	+		GFF3702	0.56	+0.7
3,748,374	-		GFF3702	0.58	-0.9
3,748,375	-		GFF3702	0.58	-0.6
3,748,400	-		GFF3702	0.60	-1.2
3,748,404	+		GFF3702	0.60	+0.4
3,748,433	+		GFF3702	0.63	+0.6
3,748,443	+		GFF3702	0.64	-0.6
3,748,453	+		GFF3702	0.65	+1.4
3,748,454	+		GFF3702	0.65	+0.3
3,748,458	+		GFF3702	0.66	+1.1
3,748,462	-		GFF3702	0.66	-0.2
3,748,485	+		GFF3702	0.68	+2.3
3,748,485	+		GFF3702	0.68	+1.5
3,748,490	+		GFF3702	0.69	+0.8
3,748,493	-		GFF3702	0.69	+0.5
3,748,493	-		GFF3702	0.69	-3.1
3,748,493	-		GFF3702	0.69	-0.3
3,748,499	+		GFF3702	0.69	-1.2
3,748,503	-		GFF3702	0.70	-0.2
3,748,504	+		GFF3702	0.70	-0.4
3,748,507	-		GFF3702	0.70	+0.0
3,748,507	-		GFF3702	0.70	-1.9
3,748,507	-		GFF3702	0.70	-0.3
3,748,509	+		GFF3702	0.70	-0.3
3,748,512	-		GFF3702	0.71	+0.8
3,748,512	-		GFF3702	0.71	-0.1
3,748,512	-		GFF3702	0.71	-0.4
3,748,512	-		GFF3702	0.71	-0.3
3,748,547	-		GFF3702	0.74	+1.1
3,748,571	-		GFF3702	0.76	+0.3
3,748,608	+		GFF3702	0.80	+1.8
3,748,610	-		GFF3702	0.80	-0.7
3,748,659	+		GFF3702	0.85	-0.1
3,748,681	+		GFF3702	0.87	+0.0
3,748,711	+		GFF3702	0.89	-0.7
3,748,783	+				+1.0
3,748,783	+				+0.7
3,748,785	+				+0.0
3,748,785	+				-1.4
3,748,785	+				-0.8
3,748,793	-				+1.1
3,748,793	-				+1.0
3,748,793	-				+0.4
3,748,793	-				-0.3
3,748,815	-				+0.5
3,748,822	+				-1.3
3,748,830	-				-0.6
3,748,849	-				-0.0
3,748,849	-				-1.2
3,748,859	-				-0.0
3,748,874	+				-0.1
3,748,879	+				+0.6
3,748,879	+				-2.2
3,748,879	+				+0.1
3,748,879	+				-0.0
3,748,884	+				-0.1
3,748,887	-				+0.9
3,748,887	-				+0.8
3,748,887	-				+1.3
3,748,887	-				-0.4
3,748,892	-				+0.4
3,748,892	-				-0.6
3,748,892	-				+0.3
3,748,906	-				-0.5
3,748,906	-				-0.1
3,748,912	+		GFF3703	0.10	-0.4
3,748,924	+		GFF3703	0.11	-0.7
3,748,927	+		GFF3703	0.12	-0.1
3,748,932	-		GFF3703	0.12	-0.2
3,748,970	+		GFF3703	0.17	+0.0
3,748,970	+		GFF3703	0.17	-0.2
3,749,011	+		GFF3703	0.22	-0.7
3,749,011	+		GFF3703	0.22	-0.9
3,749,012	+		GFF3703	0.22	-2.1
3,749,012	+		GFF3703	0.22	+0.8
3,749,019	-		GFF3703	0.22	-0.6
3,749,019	-		GFF3703	0.22	-0.7
3,749,019	-		GFF3703	0.22	+0.4
3,749,022	+		GFF3703	0.23	-0.0
3,749,022	+		GFF3703	0.23	-0.3
3,749,030	-		GFF3703	0.24	-0.1
3,749,051	+		GFF3703	0.26	-1.0
3,749,051	+		GFF3703	0.26	-1.3
3,749,051	+		GFF3703	0.26	-0.7
3,749,051	+		GFF3703	0.26	-0.8
3,749,054	-		GFF3703	0.27	-1.3
3,749,056	+		GFF3703	0.27	-0.1
3,749,059	-		GFF3703	0.27	+0.4
3,749,059	-		GFF3703	0.27	-0.7
3,749,059	-		GFF3703	0.27	+1.1
3,749,059	-		GFF3703	0.27	+1.0
3,749,059	-		GFF3703	0.27	-1.2
3,749,059	-		GFF3703	0.27	+0.1
3,749,061	+		GFF3703	0.27	-0.8
3,749,061	+		GFF3703	0.27	-1.3
3,749,071	+		GFF3703	0.28	+0.3
3,749,074	-		GFF3703	0.29	-1.1
3,749,078	+		GFF3703	0.29	-1.2
3,749,111	+		GFF3703	0.33	-1.1
3,749,111	+		GFF3703	0.33	+0.8
3,749,113	-		GFF3703	0.33	-1.1
3,749,117	+		GFF3703	0.34	-0.2
3,749,117	-		GFF3703	0.34	-0.2
3,749,124	-		GFF3703	0.35	-0.2
3,749,125	-		GFF3703	0.35	-1.5
3,749,128	+		GFF3703	0.35	+0.8
3,749,128	+		GFF3703	0.35	+0.1
3,749,128	+		GFF3703	0.35	+0.3
3,749,133	+		GFF3703	0.36	-0.2
3,749,136	-		GFF3703	0.36	-0.7
3,749,136	-		GFF3703	0.36	+0.8
3,749,149	+		GFF3703	0.38	+0.3
3,749,155	+		GFF3703	0.38	+0.6
3,749,155	+		GFF3703	0.38	-0.3
3,749,155	+		GFF3703	0.38	+0.1
3,749,155	-		GFF3703	0.38	-0.7
3,749,163	-		GFF3703	0.39	+0.1
3,749,171	+		GFF3703	0.40	-0.2
3,749,173	-		GFF3703	0.40	-1.1
3,749,173	-		GFF3703	0.40	+0.4
3,749,184	-		GFF3703	0.42	+0.6
3,749,184	-		GFF3703	0.42	-0.2
3,749,186	-		GFF3703	0.42	-0.2
3,749,195	+		GFF3703	0.43	-2.0
3,749,195	+		GFF3703	0.43	+1.6
3,749,197	+		GFF3703	0.43	+1.0
3,749,203	-		GFF3703	0.44	-2.7
3,749,213	-		GFF3703	0.45	+1.1
3,749,219	+		GFF3703	0.46	-2.0
3,749,219	+		GFF3703	0.46	-2.3
3,749,219	+		GFF3703	0.46	-0.3
3,749,219	+		GFF3703	0.46	+0.0
3,749,219	+		GFF3703	0.46	+1.2
3,749,219	+		GFF3703	0.46	-1.2
3,749,219	+		GFF3703	0.46	-1.6
3,749,219	+		GFF3703	0.46	+0.4
3,749,219	+		GFF3703	0.46	+0.0
3,749,219	+		GFF3703	0.46	+0.4
3,749,219	+		GFF3703	0.46	-1.1
3,749,227	+		GFF3703	0.47	-0.1
3,749,227	-		GFF3703	0.47	-1.2
3,749,227	-		GFF3703	0.47	+0.3
3,749,227	-		GFF3703	0.47	-1.1
3,749,227	-		GFF3703	0.47	-1.6
3,749,227	-		GFF3703	0.47	+0.1
3,749,227	-		GFF3703	0.47	-0.5
3,749,267	-		GFF3703	0.51	+0.3
3,749,276	-		GFF3703	0.52	+0.4
3,749,285	+		GFF3703	0.53	-1.0
3,749,287	-		GFF3703	0.53	-0.8
3,749,305	+		GFF3703	0.56	-1.4
3,749,309	+		GFF3703	0.56	+1.0
3,749,309	+		GFF3703	0.56	+0.1
3,749,309	+		GFF3703	0.56	-0.9
3,749,329	-		GFF3703	0.58	+0.5
3,749,337	+		GFF3703	0.59	+1.4
3,749,337	+		GFF3703	0.59	-1.7
3,749,376	-		GFF3703	0.64	-1.3
3,749,396	-		GFF3703	0.66	-1.0
3,749,416	-		GFF3703	0.68	-1.1
3,749,428	-		GFF3703	0.70	-0.0
3,749,428	-		GFF3703	0.70	-0.6
3,749,442	+		GFF3703	0.71	+0.0
3,749,442	+		GFF3703	0.71	-0.2
3,749,460	-		GFF3703	0.73	-0.1
3,749,469	-		GFF3703	0.75	-0.3
3,749,469	-		GFF3703	0.75	-1.7
3,749,483	+		GFF3703	0.76	-0.0
3,749,483	+		GFF3703	0.76	-1.2
3,749,483	+		GFF3703	0.76	-0.6
3,749,483	+		GFF3703	0.76	+0.3
3,749,483	+		GFF3703	0.76	-0.2
3,749,483	+		GFF3703	0.76	+0.4
3,749,483	+		GFF3703	0.76	-0.6
3,749,483	+		GFF3703	0.76	-0.3
3,749,483	+		GFF3703	0.76	-0.7
3,749,483	+		GFF3703	0.76	+0.2
3,749,483	+		GFF3703	0.76	+0.4
3,749,483	+		GFF3703	0.76	-1.0
3,749,485	+		GFF3703	0.76	-2.3
3,749,491	-		GFF3703	0.77	+0.6
3,749,491	-		GFF3703	0.77	+0.7
3,749,491	-		GFF3703	0.77	-0.2
3,749,491	-		GFF3703	0.77	-1.6
3,749,491	-		GFF3703	0.77	+0.3
3,749,491	-		GFF3703	0.77	-0.7
3,749,491	-		GFF3703	0.77	-0.4
3,749,491	-		GFF3703	0.77	+0.1
3,749,491	-		GFF3703	0.77	+1.3
3,749,491	-		GFF3703	0.77	-1.7
3,749,491	-		GFF3703	0.77	-0.6
3,749,491	-		GFF3703	0.77	+0.9
3,749,491	-		GFF3703	0.77	-1.3
3,749,492	+		GFF3703	0.77	+0.5
3,749,492	+		GFF3703	0.77	-1.1
3,749,493	-		GFF3703	0.77	-1.0
3,749,493	-		GFF3703	0.77	+0.1
3,749,493	-		GFF3703	0.77	-1.7
3,749,493	-		GFF3703	0.77	+0.8
3,749,499	-		GFF3703	0.78	-0.2
3,749,500	-		GFF3703	0.78	-0.7
3,749,500	-		GFF3703	0.78	+0.8
3,749,500	-		GFF3703	0.78	+0.5
3,749,504	+		GFF3703	0.79	-0.8
3,749,507	+		GFF3703	0.79	+0.1
3,749,514	-		GFF3703	0.80	-1.4
3,749,518	+		GFF3703	0.80	-0.3
3,749,523	+		GFF3703	0.81	+0.2
3,749,585	+		GFF3703	0.88	-0.1
3,749,590	+		GFF3703	0.89	+0.3
3,749,598	-		GFF3703	0.89	-0.6
3,749,598	-		GFF3703	0.89	-0.9
3,749,599	+		GFF3703	0.90	+0.2
3,749,599	+		GFF3703	0.90	-1.3
3,749,604	+				+0.4
3,749,607	-				-0.4
3,749,607	-				+0.5
3,749,607	-				+1.0
3,749,610	+				+0.5
3,749,612	-				-0.4
3,749,612	-				-1.0
3,749,612	-				+1.3
3,749,632	+				+0.1
3,749,642	+				-1.0
3,749,664	+				-0.3
3,749,714	+				-0.4
3,749,743	-				-0.0
3,749,756	+				+0.7
3,749,764	-				+0.1
3,749,764	-				-1.3
3,749,764	-				+0.4
3,749,783	-				-0.4
3,749,790	-				-1.2
3,749,790	-				-0.0
3,749,808	+				-1.0
3,749,816	-				-2.0
3,749,818	+				+0.8
3,749,823	+				-0.7
3,749,832	+				+1.0
3,749,840	-				-1.5
3,749,841	-				-1.3
3,749,846	-				-0.5
3,749,855	+				-2.1
3,749,855	+				-1.4
3,749,863	-				-0.1
3,749,870	+				+0.6
3,749,878	-				+0.0
3,749,906	-		GFF3704	0.11	+0.7
3,749,917	-		GFF3704	0.12	+0.6
3,749,922	-		GFF3704	0.13	+0.6
3,749,955	+		GFF3704	0.17	-0.6
3,749,967	-		GFF3704	0.18	+0.0
3,749,971	+		GFF3704	0.19	+0.1
3,749,971	+		GFF3704	0.19	-1.2
3,749,971	+		GFF3704	0.19	-0.1
3,749,971	+		GFF3704	0.19	-1.6
3,749,971	+		GFF3704	0.19	-1.2
3,749,971	+		GFF3704	0.19	-1.2
3,749,971	+		GFF3704	0.19	-0.1
3,749,971	+		GFF3704	0.19	-1.4
3,749,979	-		GFF3704	0.20	-0.2
3,749,979	-		GFF3704	0.20	-2.4
3,749,979	-		GFF3704	0.20	+0.0
3,749,979	-		GFF3704	0.20	-1.6
3,749,979	-		GFF3704	0.20	+0.8
3,749,979	-		GFF3704	0.20	-0.6
3,749,979	-		GFF3704	0.20	-0.8
3,749,979	-		GFF3704	0.20	-0.6
3,749,991	+		GFF3704	0.21	+1.1
3,749,999	-		GFF3704	0.22	+0.0
3,750,012	+		GFF3704	0.24	-0.6
3,750,026	-		GFF3704	0.25	+0.6
3,750,026	-		GFF3704	0.25	+0.1
3,750,026	-		GFF3704	0.25	+1.5
3,750,028	+		GFF3704	0.26	-0.1
3,750,076	+		GFF3704	0.31	-0.6
3,750,084	-		GFF3704	0.32	-0.4
3,750,094	-		GFF3704	0.33	-1.0
3,750,097	+		GFF3704	0.34	+0.5
3,750,097	+		GFF3704	0.34	-0.3
3,750,116	+		GFF3704	0.36	-0.0
3,750,121	+		GFF3704	0.37	+0.1
3,750,129	-		GFF3704	0.37	+0.8
3,750,129	-		GFF3704	0.37	+0.0
3,750,134	-		GFF3704	0.38	-1.2
3,750,134	-		GFF3704	0.38	+0.7
3,750,188	+		GFF3704	0.44	+0.4
3,750,188	+		GFF3704	0.44	+0.2
3,750,188	+		GFF3704	0.44	-2.4
3,750,195	+		GFF3704	0.45	-0.4
3,750,196	-		GFF3704	0.45	+1.5
3,750,196	-		GFF3704	0.45	-0.2
3,750,196	-		GFF3704	0.45	+0.6
3,750,196	-		GFF3704	0.45	+0.7
3,750,196	-		GFF3704	0.45	+0.8
3,750,198	+		GFF3704	0.46	-0.9
3,750,204	+		GFF3704	0.46	-1.7
3,750,204	+		GFF3704	0.46	+0.3
3,750,210	+		GFF3704	0.47	+1.4
3,750,212	-		GFF3704	0.47	-0.1
3,750,247	+		GFF3704	0.51	-0.0
3,750,247	+		GFF3704	0.51	+0.1
3,750,255	-		GFF3704	0.52	-1.3
3,750,265	+		GFF3704	0.54	-0.4
3,750,265	+		GFF3704	0.54	+0.3
3,750,346	+		GFF3704	0.63	+0.3
3,750,354	-		GFF3704	0.64	+0.4
3,750,357	-		GFF3704	0.64	+0.9
3,750,374	-		GFF3704	0.66	-1.6
3,750,424	+		GFF3704	0.72	+1.0
3,750,450	+		GFF3704	0.75	-1.1
3,750,458	-		GFF3704	0.76	+1.5
3,750,461	+		GFF3704	0.77	+0.3
3,750,465	-		GFF3704	0.77	+0.0
3,750,477	-		GFF3704	0.79	-1.3
3,750,477	-		GFF3704	0.79	-1.7
3,750,481	+		GFF3704	0.79	-1.3
3,750,489	-		GFF3704	0.80	-1.6
3,750,505	+		GFF3704	0.82	-1.8
3,750,511	+		GFF3704	0.83	-0.2
3,750,511	+		GFF3704	0.83	-1.0
3,750,519	-		GFF3704	0.84	-0.2
3,750,520	-		GFF3704	0.84	-1.1
3,750,521	-		GFF3704	0.84	-0.3
3,750,523	+		GFF3704	0.84	-1.7
3,750,526	-		GFF3704	0.84	-0.5
3,750,542	+		GFF3704	0.86	-0.8
3,750,547	+		GFF3704	0.87	+0.8
3,750,547	+		GFF3704	0.87	-1.0
3,750,547	+		GFF3704	0.87	+0.2
3,750,550	-		GFF3704	0.87	-0.4
3,750,552	+		GFF3704	0.87	-0.6
3,750,552	+		GFF3704	0.87	-1.2
3,750,555	-		GFF3704	0.88	-0.3
3,750,555	-		GFF3704	0.88	-0.6
3,750,560	-		GFF3704	0.88	-1.5
3,750,560	-		GFF3704	0.88	+1.2
3,750,560	-		GFF3704	0.88	+1.4
3,750,560	-		GFF3704	0.88	-1.0
3,750,560	-		GFF3704	0.88	-1.2
3,750,560	-		GFF3704	0.88	-1.2
3,750,567	+		GFF3704	0.89	-0.1
3,750,567	+		GFF3704	0.89	-1.7
3,750,567	+		GFF3704	0.89	-0.0
3,750,569	+		GFF3704	0.89	+2.0
3,750,575	-				-0.1
3,750,579	+				-0.4
3,750,649	+				-0.6
3,750,658	+				-0.9
3,750,658	+				+0.9
3,750,658	+				+1.4
3,750,658	+				-0.3
3,750,664	+				+0.8
3,750,666	-				+0.5
3,750,668	+				-0.7
3,750,676	+				+0.7