Strain Fitness in Sphingobium sp. HT1-2 around GFF3686

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,729,559	-		GFF3685	0.64	-0.2
3,729,559	-		GFF3685	0.64	+0.8
3,729,567	-		GFF3685	0.64	-2.3
3,729,567	-		GFF3685	0.64	+0.2
3,729,568	-		GFF3685	0.64	-0.7
3,729,568	-		GFF3685	0.64	-0.2
3,729,579	+		GFF3685	0.65	+0.2
3,729,579	+		GFF3685	0.65	+0.6
3,729,579	+		GFF3685	0.65	+0.3
3,729,579	+		GFF3685	0.65	-1.4
3,729,579	+		GFF3685	0.65	-0.9
3,729,579	+		GFF3685	0.65	-1.8
3,729,579	+		GFF3685	0.65	-0.6
3,729,579	+		GFF3685	0.65	+0.4
3,729,579	+		GFF3685	0.65	+0.3
3,729,579	+		GFF3685	0.65	+0.5
3,729,579	+		GFF3685	0.65	+0.8
3,729,579	+		GFF3685	0.65	-0.6
3,729,587	-		GFF3685	0.65	-1.9
3,729,587	-		GFF3685	0.65	-2.1
3,729,587	-		GFF3685	0.65	+0.2
3,729,587	-		GFF3685	0.65	-0.5
3,729,587	-		GFF3685	0.65	+0.7
3,729,587	-		GFF3685	0.65	+0.2
3,729,587	-		GFF3685	0.65	-0.5
3,729,587	-		GFF3685	0.65	-0.6
3,729,594	+		GFF3685	0.65	-0.6
3,729,594	+		GFF3685	0.65	-0.5
3,729,594	+		GFF3685	0.65	+1.4
3,729,594	+		GFF3685	0.65	-1.0
3,729,594	+		GFF3685	0.65	-0.7
3,729,601	+		GFF3685	0.66	+0.5
3,729,602	-		GFF3685	0.66	+0.7
3,729,602	-		GFF3685	0.66	-0.6
3,729,602	-		GFF3685	0.66	-2.1
3,729,602	-		GFF3685	0.66	-0.9
3,729,602	-		GFF3685	0.66	+0.2
3,729,619	-		GFF3685	0.66	-1.5
3,729,619	-		GFF3685	0.66	+0.2
3,729,625	-		GFF3685	0.67	+0.5
3,729,636	-		GFF3685	0.67	+0.5
3,729,657	+		GFF3685	0.68	+0.2
3,729,657	+		GFF3685	0.68	+1.4
3,729,657	+		GFF3685	0.68	-1.2
3,729,657	+		GFF3685	0.68	-0.1
3,729,657	+		GFF3685	0.68	-1.2
3,729,657	+		GFF3685	0.68	+0.2
3,729,662	+		GFF3685	0.68	-1.2
3,729,662	+		GFF3685	0.68	-0.6
3,729,665	-		GFF3685	0.69	+1.1
3,729,665	-		GFF3685	0.69	-1.3
3,729,667	+		GFF3685	0.69	+0.2
3,729,667	+		GFF3685	0.69	+0.2
3,729,667	+		GFF3685	0.69	-0.2
3,729,667	+		GFF3685	0.69	+0.1
3,729,667	+		GFF3685	0.69	+0.7
3,729,667	+		GFF3685	0.69	+0.2
3,729,667	+		GFF3685	0.69	+0.3
3,729,667	+		GFF3685	0.69	-0.6
3,729,667	+		GFF3685	0.69	-0.3
3,729,667	+		GFF3685	0.69	+0.4
3,729,667	+		GFF3685	0.69	+0.2
3,729,667	+		GFF3685	0.69	+0.2
3,729,667	+		GFF3685	0.69	+0.5
3,729,667	+		GFF3685	0.69	-0.3
3,729,667	+		GFF3685	0.69	+1.6
3,729,670	-		GFF3685	0.69	+0.5
3,729,670	-		GFF3685	0.69	-1.6
3,729,675	-		GFF3685	0.69	+0.2
3,729,675	-		GFF3685	0.69	+1.1
3,729,675	-		GFF3685	0.69	+0.2
3,729,675	-		GFF3685	0.69	+0.1
3,729,675	-		GFF3685	0.69	+0.0
3,729,675	-		GFF3685	0.69	-3.2
3,729,675	-		GFF3685	0.69	-0.3
3,729,675	-		GFF3685	0.69	-0.4
3,729,675	-		GFF3685	0.69	+0.6
3,729,675	-		GFF3685	0.69	+0.3
3,729,675	-		GFF3685	0.69	+0.3
3,729,675	-		GFF3685	0.69	-1.7
3,729,675	-		GFF3685	0.69	-0.9
3,729,675	-		GFF3685	0.69	-0.1
3,729,675	-		GFF3685	0.69	+2.2
3,729,675	-		GFF3685	0.69	-0.6
3,729,675	-		GFF3685	0.69	-0.3
3,729,700	+		GFF3685	0.70	-0.5
3,729,704	-		GFF3685	0.70	-1.0
3,729,757	+		GFF3685	0.73	+0.0
3,729,757	+		GFF3685	0.73	+0.8
3,729,765	-		GFF3685	0.73	-0.2
3,729,765	-		GFF3685	0.73	-1.0
3,729,788	+		GFF3685	0.74	-0.2
3,729,794	+		GFF3685	0.75	-1.6
3,729,795	-		GFF3685	0.75	+1.5
3,729,796	-		GFF3685	0.75	-0.3
3,729,848	+		GFF3685	0.77	-0.5
3,729,849	-		GFF3685	0.77	+0.0
3,729,865	+		GFF3685	0.78	+1.0
3,729,888	+		GFF3685	0.79	-0.3
3,729,888	+		GFF3685	0.79	+1.6
3,729,888	+		GFF3685	0.79	-1.2
3,729,888	+		GFF3685	0.79	-1.2
3,729,888	+		GFF3685	0.79	+0.3
3,729,888	+		GFF3685	0.79	-1.0
3,729,888	+		GFF3685	0.79	-1.4
3,729,888	+		GFF3685	0.79	+0.1
3,729,888	+		GFF3685	0.79	+0.7
3,729,888	+		GFF3685	0.79	+0.0
3,729,888	+		GFF3685	0.79	+0.1
3,729,888	+		GFF3685	0.79	-0.5
3,729,888	+		GFF3685	0.79	+1.0
3,729,888	+		GFF3685	0.79	+0.2
3,729,888	+		GFF3685	0.79	+0.4
3,729,888	+		GFF3685	0.79	-0.6
3,729,888	+		GFF3685	0.79	+0.2
3,729,893	+		GFF3685	0.79	-1.6
3,729,893	+		GFF3685	0.79	+0.1
3,729,893	+		GFF3685	0.79	-0.4
3,729,895	+		GFF3685	0.79	-1.3
3,729,896	-		GFF3685	0.79	-0.8
3,729,896	-		GFF3685	0.79	+0.3
3,729,896	-		GFF3685	0.79	-0.4
3,729,896	-		GFF3685	0.79	-0.2
3,729,896	-		GFF3685	0.79	-0.7
3,729,896	-		GFF3685	0.79	+0.9
3,729,896	-		GFF3685	0.79	-0.6
3,729,896	-		GFF3685	0.79	+0.9
3,729,896	-		GFF3685	0.79	-1.2
3,729,896	-		GFF3685	0.79	+0.3
3,729,898	+		GFF3685	0.79	+1.2
3,729,901	-		GFF3685	0.79	-1.7
3,729,911	+		GFF3685	0.80	+0.7
3,729,919	-		GFF3685	0.80	+0.0
3,729,930	-		GFF3685	0.81	+1.6
3,729,947	-		GFF3685	0.82	+0.5
3,729,966	+		GFF3685	0.82	+0.0
3,729,966	+		GFF3685	0.82	+0.4
3,729,966	+		GFF3685	0.82	+0.1
3,729,972	+		GFF3685	0.83	-0.6
3,729,972	+		GFF3685	0.83	+0.3
3,729,972	+		GFF3685	0.83	+0.8
3,729,972	+		GFF3685	0.83	+0.4
3,729,972	+		GFF3685	0.83	+0.2
3,729,974	+		GFF3685	0.83	+2.0
3,729,974	-		GFF3685	0.83	-0.5
3,729,974	-		GFF3685	0.83	+0.2
3,729,980	-		GFF3685	0.83	-0.6
3,729,980	-		GFF3685	0.83	-1.2
3,729,980	-		GFF3685	0.83	-0.5
3,729,980	-		GFF3685	0.83	+0.2
3,729,980	-		GFF3685	0.83	+0.8
3,729,980	-		GFF3685	0.83	-1.1
3,729,980	-		GFF3685	0.83	+0.6
3,729,980	-		GFF3685	0.83	+1.9
3,729,980	-		GFF3685	0.83	-2.1
3,729,982	+		GFF3685	0.83	-0.3
3,729,982	+		GFF3685	0.83	-0.6
3,729,990	-		GFF3685	0.84	+0.0
3,729,999	-		GFF3685	0.84	-0.1
3,730,011	-		GFF3685	0.85	-0.3
3,730,028	-		GFF3685	0.85	-0.7
3,730,050	-		GFF3685	0.86	+0.4
3,730,063	+		GFF3685	0.87	-1.3
3,730,063	+		GFF3685	0.87	+0.5
3,730,063	+		GFF3685	0.87	+0.1
3,730,063	+		GFF3685	0.87	+0.9
3,730,063	+		GFF3685	0.87	-0.9
3,730,065	-		GFF3685	0.87	-1.8
3,730,071	-		GFF3685	0.87	-0.9
3,730,071	-		GFF3685	0.87	-0.2
3,730,071	-		GFF3685	0.87	-2.1
3,730,071	-		GFF3685	0.87	+0.8
3,730,071	-		GFF3685	0.87	-3.0
3,730,078	-		GFF3685	0.88	-0.8
3,730,078	-		GFF3685	0.88	-1.8
3,730,097	+		GFF3685	0.89	-1.8
3,730,128	-		GFF3685	0.90	-1.9
3,730,133	+				+0.1
3,730,133	+				-0.7
3,730,134	-				+0.4
3,730,141	-				-1.5
3,730,141	-				-0.9
3,730,141	-				-0.2
3,730,146	-				-1.2
3,730,146	-				-0.6
3,730,161	-				-2.1
3,730,174	-				-0.2
3,730,179	+				+0.5
3,730,183	+				+0.5
3,730,183	+				-0.9
3,730,192	+				+0.8
3,730,200	-				-0.4
3,730,201	-				+0.8
3,730,201	-				+0.1
3,730,201	-				-0.2
3,730,225	+				+0.3
3,730,225	+				-1.2
3,730,225	+				+0.2
3,730,225	+				+0.4
3,730,225	+				-0.9
3,730,225	+				+0.0
3,730,225	+				+0.4
3,730,225	+				+1.7
3,730,225	+				-1.0
3,730,225	+				+0.2
3,730,225	+				-1.6
3,730,225	+				+0.8
3,730,225	+				-0.4
3,730,225	+				+0.1
3,730,225	+				+1.2
3,730,233	-				-1.5
3,730,233	-				+0.7
3,730,233	-				+1.4
3,730,233	-				+0.2
3,730,233	-				+1.0
3,730,233	-				-1.3
3,730,233	-				-1.2
3,730,233	-				+0.5
3,730,233	-				-0.8
3,730,233	-				-0.3
3,730,238	+				-1.7
3,730,257	-				+0.2
3,730,276	-				-1.5
3,730,281	-				+0.3
3,730,281	-				+0.9
3,730,291	-				-0.2
3,730,303	-				-2.8
3,730,309	+				+0.0
3,730,318	-				-2.8
3,730,322	-				+1.1
3,730,358	-				+2.4
3,730,359	-				+0.7
3,730,365	+				-0.8
3,730,368	-				+0.9
3,730,486	-				+1.1
3,730,490	+				-0.8
3,730,490	+				+0.8
3,730,490	+				+0.8
3,730,498	-				+0.6
3,730,498	-				-2.5
3,730,544	+				-0.3
3,730,544	+				+0.8
3,730,545	+				-0.5
3,730,552	-				+0.8
3,730,578	-				-0.3
3,730,583	+				-1.2
3,730,610	+				+0.5
3,730,610	+				+0.7
3,730,610	+				-0.1
3,730,614	+				-1.7
3,730,620	+				-0.3
3,730,622	-				+0.4
3,730,628	-				-0.2
3,730,642	+				-1.1
3,730,664	+		GFF3686	0.12	+0.1
3,730,664	-		GFF3686	0.12	+1.1
3,730,674	+		GFF3686	0.13	-2.4
3,730,697	-		GFF3686	0.15	+1.6
3,730,703	-		GFF3686	0.16	-2.5
3,730,703	-		GFF3686	0.16	+0.0
3,730,721	+		GFF3686	0.18	-1.0
3,730,721	+		GFF3686	0.18	+0.3
3,730,721	+		GFF3686	0.18	-0.4
3,730,721	+		GFF3686	0.18	+0.6
3,730,729	-		GFF3686	0.18	-0.5
3,730,729	-		GFF3686	0.18	-0.5
3,730,739	-		GFF3686	0.19	+0.5
3,730,780	+		GFF3686	0.24	-0.1
3,730,780	-		GFF3686	0.24	+0.3
3,730,790	-		GFF3686	0.25	+0.1
3,730,798	+		GFF3686	0.25	-0.8
3,730,821	+		GFF3686	0.28	-1.0
3,730,847	-		GFF3686	0.30	+0.2
3,730,864	+		GFF3686	0.32	-0.4
3,730,867	-		GFF3686	0.32	+0.3
3,730,901	+		GFF3686	0.36	-0.4
3,730,925	+		GFF3686	0.38	-0.3
3,730,925	+		GFF3686	0.38	+0.6
3,730,930	+		GFF3686	0.39	-0.5
3,730,935	+		GFF3686	0.39	-0.2
3,730,935	+		GFF3686	0.39	-0.3
3,730,935	+		GFF3686	0.39	+0.9
3,730,935	+		GFF3686	0.39	+0.7
3,730,935	+		GFF3686	0.39	+0.0
3,730,935	+		GFF3686	0.39	-2.1
3,730,938	-		GFF3686	0.40	-1.8
3,730,943	-		GFF3686	0.40	+0.5
3,730,943	-		GFF3686	0.40	+1.0
3,730,943	-		GFF3686	0.40	-0.0
3,730,943	-		GFF3686	0.40	-0.1
3,730,943	-		GFF3686	0.40	-0.2
3,730,943	-		GFF3686	0.40	+2.0
3,730,949	-		GFF3686	0.41	-0.7
3,730,954	-		GFF3686	0.41	+0.2
3,730,954	-		GFF3686	0.41	+0.7
3,730,954	-		GFF3686	0.41	+0.5
3,730,954	-		GFF3686	0.41	+0.7
3,730,967	+		GFF3686	0.43	+0.2
3,730,982	-		GFF3686	0.44	-0.4
3,730,987	+		GFF3686	0.45	-0.6
3,731,055	+		GFF3686	0.51	-1.6
3,731,055	+		GFF3686	0.51	+0.3
3,731,055	+		GFF3686	0.51	-1.4
3,731,055	+		GFF3686	0.51	+1.7
3,731,055	+		GFF3686	0.51	-1.8
3,731,055	+		GFF3686	0.51	-0.6
3,731,055	+		GFF3686	0.51	+0.9
3,731,055	+		GFF3686	0.51	-1.6
3,731,055	+		GFF3686	0.51	-1.0
3,731,055	+		GFF3686	0.51	-0.1
3,731,055	+		GFF3686	0.51	+0.4
3,731,055	+		GFF3686	0.51	-0.0
3,731,055	+		GFF3686	0.51	+0.7
3,731,055	+		GFF3686	0.51	-0.5
3,731,055	+		GFF3686	0.51	-1.0
3,731,055	+		GFF3686	0.51	+0.2
3,731,055	+		GFF3686	0.51	+0.1
3,731,055	+		GFF3686	0.51	+0.7
3,731,055	+		GFF3686	0.51	-0.4
3,731,055	+		GFF3686	0.51	+0.8
3,731,055	+		GFF3686	0.51	-0.1
3,731,056	+		GFF3686	0.52	+0.4
3,731,056	+		GFF3686	0.52	-0.4
3,731,063	-		GFF3686	0.52	+0.2
3,731,063	-		GFF3686	0.52	-0.3
3,731,063	-		GFF3686	0.52	+1.0
3,731,063	-		GFF3686	0.52	+1.2
3,731,063	-		GFF3686	0.52	-0.6
3,731,063	-		GFF3686	0.52	-0.4
3,731,063	-		GFF3686	0.52	+1.1
3,731,063	-		GFF3686	0.52	-0.3
3,731,063	-		GFF3686	0.52	-0.5
3,731,063	-		GFF3686	0.52	-0.0
3,731,063	-		GFF3686	0.52	-0.6
3,731,063	-		GFF3686	0.52	-0.6
3,731,063	-		GFF3686	0.52	+0.5
3,731,063	-		GFF3686	0.52	+0.9
3,731,063	-		GFF3686	0.52	-0.2
3,731,063	-		GFF3686	0.52	-1.1
3,731,063	-		GFF3686	0.52	-0.4
3,731,063	-		GFF3686	0.52	+1.1
3,731,064	-		GFF3686	0.52	-1.3
3,731,086	-		GFF3686	0.55	+0.1
3,731,088	+		GFF3686	0.55	-1.2
3,731,145	+		GFF3686	0.61	-1.8
3,731,169	-		GFF3686	0.63	+0.4
3,731,201	+		GFF3686	0.66	-2.3
3,731,216	+		GFF3686	0.68	+0.2
3,731,256	+		GFF3686	0.72	+1.7
3,731,262	+		GFF3686	0.72	+0.9
3,731,262	+		GFF3686	0.72	+0.0
3,731,262	+		GFF3686	0.72	+2.0
3,731,268	+		GFF3686	0.73	+0.2
3,731,270	-		GFF3686	0.73	-1.6
3,731,270	-		GFF3686	0.73	-0.2
3,731,270	-		GFF3686	0.73	+0.7
3,731,270	-		GFF3686	0.73	-0.2
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3,731,469	+				+1.2
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3,731,486	+				-2.1
3,731,486	+				+0.7
3,731,486	+				-1.0
3,731,486	+				+0.1
3,731,486	+				+1.9
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3,731,538	-				-1.1
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3,731,612	-				-0.2
3,731,648	+				+0.2
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3,731,768	+				-0.3
3,731,778	+				+1.1
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3,731,793	+				+0.8
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3,731,808	+				+0.2
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