Strain Fitness in Sphingobium sp. HT1-2 around GFF367

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
358,228	+		GFF365	0.83	+1.1
358,244	+		GFF365	0.85	+1.7
358,244	+		GFF365	0.85	-1.2
358,249	+		GFF365	0.86	-0.7
358,249	+		GFF365	0.86	+0.8
358,249	+		GFF365	0.86	+0.6
358,252	-		GFF365	0.87	-0.4
358,252	-		GFF365	0.87	-1.0
358,252	-		GFF365	0.87	-1.4
358,257	-		GFF365	0.88	+0.3
358,301	-				-0.6
358,327	-				-1.4
358,327	-				-1.0
358,332	-				+0.0
358,335	+				+0.2
358,337	-				+1.0
358,342	-				+1.2
358,371	+				-0.1
358,371	+				-1.3
358,372	+				-1.3
358,372	+				-1.3
358,376	+				+0.6
358,376	+				-0.5
358,380	-				-2.4
358,384	-				-1.8
358,392	+				-0.2
358,393	+				-2.4
358,432	-		GFF366	0.14	-0.8
358,441	+		GFF366	0.17	-0.2
358,442	-		GFF366	0.17	+0.1
358,457	-		GFF366	0.21	+0.0
358,471	+		GFF366	0.24	-0.5
358,476	+		GFF366	0.25	-1.2
358,484	-		GFF366	0.27	-2.5
358,509	+		GFF366	0.34	+0.8
358,522	-		GFF366	0.37	-1.4
358,537	-		GFF366	0.41	-2.5
358,544	-		GFF366	0.42	-1.4
358,600	+		GFF366	0.56	-0.7
358,605	+		GFF366	0.58	+0.0
358,608	-		GFF366	0.58	-1.0
358,620	-		GFF366	0.61	-0.3
358,620	-		GFF366	0.61	-0.7
358,648	+		GFF366	0.68	-1.4
358,658	+		GFF366	0.71	-2.2
358,732	-		GFF366	0.89	-1.5
358,739	-				+0.6
358,758	-				-0.2
358,821	+				-2.0
358,821	+				+1.4
358,821	+				+0.2
358,821	+				+1.2
358,821	+				-2.1
358,821	+				-0.5
358,829	-				+0.2
358,836	+				+0.3
358,846	-				+0.5
358,903	-				+0.5
358,927	+				+0.6
358,927	+				+1.2
358,931	-				-1.3
358,935	-				+0.2
358,935	-				+0.5
358,935	-				-1.8
358,969	+				-0.5
358,969	+				-0.2
359,003	-				+0.5
359,010	-				-1.2
359,010	-				-0.4
359,015	+				-1.9
359,021	+				-0.9
359,039	-				-1.5
359,056	-				-1.4
359,113	+				+1.4
359,130	-				-2.0
359,135	-				+0.3
359,138	-				-0.3
359,143	-				-0.7
359,190	+				-2.0
359,216	-				-1.8
359,228	+				+0.1
359,228	+				+0.2
359,234	+				-0.5
359,235	+				-0.3
359,235	+				-2.3
359,235	+				-0.4
359,235	-				-1.0
359,248	+				+1.1
359,284	+				+0.2
359,286	-				+0.1
359,297	+				-1.6
359,304	-		GFF367	0.11	+0.3
359,324	+		GFF367	0.14	-1.6
359,356	+		GFF367	0.18	-0.6
359,388	+		GFF367	0.22	-1.3
359,425	+		GFF367	0.27	-0.5
359,425	+		GFF367	0.27	-0.9
359,428	+		GFF367	0.27	+0.2
359,431	-		GFF367	0.28	-0.5
359,431	-		GFF367	0.28	-0.6
359,458	+		GFF367	0.31	+0.2
359,458	+		GFF367	0.31	+1.2
359,458	+		GFF367	0.31	+0.5
359,466	-		GFF367	0.32	-1.8
359,466	-		GFF367	0.32	+0.3
359,468	+		GFF367	0.33	-0.1
359,468	+		GFF367	0.33	-2.0
359,473	+		GFF367	0.33	+0.4
359,481	+		GFF367	0.34	+1.1
359,481	+		GFF367	0.34	+0.6
359,489	-		GFF367	0.35	+0.1
359,489	-		GFF367	0.35	+0.9
359,489	-		GFF367	0.35	+0.8
359,489	-		GFF367	0.35	-1.0
359,503	+		GFF367	0.37	+0.3
359,503	+		GFF367	0.37	+1.4
359,503	+		GFF367	0.37	+0.6
359,503	+		GFF367	0.37	-0.8
359,511	-		GFF367	0.38	-0.6
359,511	-		GFF367	0.38	+0.1
359,511	-		GFF367	0.38	+0.7
359,535	+		GFF367	0.42	-0.4
359,535	+		GFF367	0.42	-0.8
359,535	+		GFF367	0.42	+0.2
359,535	+		GFF367	0.42	+0.3
359,543	-		GFF367	0.43	-0.5
359,543	-		GFF367	0.43	-1.4
359,543	-		GFF367	0.43	+0.1
359,549	-		GFF367	0.43	-1.2
359,551	+		GFF367	0.44	+0.4
359,551	+		GFF367	0.44	-2.0
359,551	+		GFF367	0.44	+1.6
359,553	-		GFF367	0.44	-1.9
359,559	-		GFF367	0.45	+0.2
359,559	-		GFF367	0.45	-1.5
359,559	-		GFF367	0.45	+0.2
359,570	+		GFF367	0.46	+0.2
359,577	+		GFF367	0.47	+0.2
359,578	+		GFF367	0.47	-0.3
359,585	-		GFF367	0.48	+0.7
359,586	-		GFF367	0.48	+0.1
359,598	+		GFF367	0.50	-0.4
359,604	+		GFF367	0.51	+0.2
359,606	-		GFF367	0.51	-0.5
359,606	-		GFF367	0.51	+0.9
359,611	-		GFF367	0.52	-0.5
359,611	-		GFF367	0.52	-0.2
359,613	+		GFF367	0.52	-2.2
359,616	-		GFF367	0.52	-1.3
359,630	+		GFF367	0.54	-1.6
359,635	+		GFF367	0.55	-0.2
359,635	+		GFF367	0.55	-1.2
359,635	+		GFF367	0.55	+1.4
359,635	+		GFF367	0.55	-0.4
359,635	+		GFF367	0.55	+1.0
359,635	+		GFF367	0.55	-0.2
359,643	-		GFF367	0.56	+0.8
359,643	-		GFF367	0.56	-0.9
359,643	-		GFF367	0.56	-0.1
359,643	-		GFF367	0.56	-1.1
359,643	-		GFF367	0.56	-1.0
359,643	-		GFF367	0.56	+0.1
359,643	-		GFF367	0.56	-0.4
359,644	+		GFF367	0.56	-0.9
359,673	-		GFF367	0.60	+1.8
359,680	-		GFF367	0.61	-0.7
359,697	-		GFF367	0.63	-0.2
359,723	+		GFF367	0.67	-0.1
359,758	+		GFF367	0.71	-2.7
359,758	+		GFF367	0.71	-0.6
359,760	-		GFF367	0.71	+0.3
359,791	-		GFF367	0.76	+0.1
359,817	+		GFF367	0.79	-2.5
359,825	-		GFF367	0.80	-2.0
359,829	+		GFF367	0.81	+0.8
359,839	+		GFF367	0.82	-1.2
359,839	+		GFF367	0.82	-0.0
359,839	+		GFF367	0.82	+0.5
359,839	+		GFF367	0.82	+0.2
359,839	+		GFF367	0.82	-0.7
359,839	+		GFF367	0.82	-0.0
359,839	+		GFF367	0.82	-1.5
359,839	+		GFF367	0.82	-1.4
359,839	+		GFF367	0.82	+1.6
359,840	-		GFF367	0.82	-0.5
359,840	-		GFF367	0.82	-0.3
359,846	+		GFF367	0.83	+0.4
359,847	-		GFF367	0.83	+0.6
359,847	-		GFF367	0.83	+0.7
359,847	-		GFF367	0.83	-0.2
359,883	+		GFF367	0.88	-1.2
359,891	-		GFF367	0.89	-1.8
359,891	-		GFF367	0.89	-0.5
359,891	-		GFF367	0.89	-0.3
359,891	-		GFF367	0.89	-0.3
359,891	-		GFF367	0.89	-0.4
359,936	+				+0.4
359,937	+				-1.7
359,937	+				+0.5
359,937	+				-0.0
359,937	+				-1.2
359,937	+				-0.3
359,945	-				+0.5
359,945	-				+1.3
359,977	+				-1.6
359,977	+				-0.2
359,977	+				-0.9
359,977	+				+0.9
359,984	+				+1.2
359,984	+				-1.2
359,984	+				-0.2
359,984	+				-0.4
359,984	+				+1.8
359,985	-				-2.6
359,989	+				-1.5
359,989	+				+0.1
359,992	-				-1.0
359,992	-				-0.1
359,992	-				-0.3
359,992	-				-0.5
359,992	-				+0.5
360,003	-				-1.2
360,043	+				-1.5
360,046	-				-0.0
360,052	+				-0.5
360,052	+				-0.0
360,070	-				+1.3
360,077	+				-0.4
360,080	-				+0.4
360,085	-				-0.6
360,096	-				-0.3
360,096	-				+0.5
360,099	-				-0.3
360,109	+				-0.4
360,109	+				+0.6
360,109	+				-1.4
360,112	-				+0.1
360,112	-				-0.4
360,117	-				+1.3
360,140	+				-1.0
360,142	+				-0.3
360,143	-				+1.0
360,150	-				-0.4
360,150	-				+1.1
360,150	-				+0.2
360,167	+				-0.0
360,167	+				+1.0
360,169	+				+1.2
360,175	-				-0.2
360,175	-				+1.2
360,175	-				-2.8
360,203	-				-0.3
360,207	+				-0.0
360,207	+				+0.6
360,229	+				+2.4
360,229	+				+0.3
360,229	+				-0.1
360,229	+				-1.2
360,229	+				+0.9
360,230	+				-1.8
360,237	-				-0.0
360,237	-				-0.7
360,237	-				+0.5
360,237	-				-0.2
360,237	-				+1.0
360,246	+				-0.7
360,254	-				-1.0
360,254	-				+1.4
360,265	+				-1.5
360,265	+				-0.1
360,272	-				-1.4
360,273	-				+1.1
360,273	-				-0.5
360,276	+				-0.3
360,280	+				+1.0
360,288	-				-0.0
360,314	-				+0.7
360,319	-				+0.7
360,324	-				+0.1
360,329	+				+0.6
360,332	-				-0.6
360,337	-				+0.4
360,337	-				-1.4
360,337	-				-0.1
360,340	+				-0.3
360,342	-				+0.2
360,349	+				-2.5
360,380	+				-1.5
360,380	+				+0.9
360,380	+				-2.0
360,380	+				-0.4
360,382	-				-0.8
360,382	-				-1.3
360,386	+				-2.6
360,387	+				-0.6
360,388	-				-1.5
360,388	-				+0.2
360,395	+				+0.0
360,395	+				+0.7
360,399	+				+0.0
360,403	-				+0.9
360,403	-				+0.4
360,405	+				-0.4
360,410	-				-0.2
360,412	+		GFF368	0.10	-1.0
360,412	+		GFF368	0.10	+0.2
360,412	-		GFF368	0.10	-1.3
360,412	-		GFF368	0.10	-0.7
360,412	-		GFF368	0.10	+0.6
360,413	-		GFF368	0.10	-0.0
360,420	-		GFF368	0.11	-0.8
360,446	+		GFF368	0.13	+0.8
360,446	+		GFF368	0.13	+0.7
360,454	-		GFF368	0.14	+1.5
360,459	+		GFF368	0.15	+0.2
360,462	-		GFF368	0.15	+0.3
360,464	+		GFF368	0.15	+0.1
360,465	-		GFF368	0.15	+1.2
360,467	-		GFF368	0.15	-1.2
360,467	-		GFF368	0.15	-0.5
360,472	-		GFF368	0.16	+0.5
360,472	-		GFF368	0.16	+1.0
360,484	-		GFF368	0.17	+0.0
360,516	-		GFF368	0.20	+0.1
360,540	-		GFF368	0.22	-1.6
360,546	-		GFF368	0.23	+0.3
360,546	-		GFF368	0.23	+0.3
360,546	-		GFF368	0.23	-1.3
360,559	+		GFF368	0.24	+0.2
360,559	+		GFF368	0.24	-1.7
360,564	-		GFF368	0.25	-1.2
360,580	+		GFF368	0.26	-0.4
360,588	-		GFF368	0.27	+1.0
360,588	-		GFF368	0.27	+0.1
360,588	-		GFF368	0.27	-0.3
360,600	-		GFF368	0.28	+1.1
360,603	+		GFF368	0.28	-1.0
360,604	-		GFF368	0.28	+0.6
360,604	-		GFF368	0.28	-0.0
360,612	-		GFF368	0.29	-0.2
360,622	+		GFF368	0.30	-0.2
360,634	+		GFF368	0.31	-1.1
360,649	+		GFF368	0.33	+0.1
360,649	+		GFF368	0.33	+1.0
360,657	-		GFF368	0.33	-2.0
360,657	-		GFF368	0.33	-0.9
360,657	-		GFF368	0.33	-0.2
360,657	-		GFF368	0.33	-0.8
360,657	-		GFF368	0.33	+1.2
360,657	-		GFF368	0.33	-0.2
360,657	-		GFF368	0.33	-2.2
360,657	-		GFF368	0.33	-0.2
360,657	-		GFF368	0.33	-1.2
360,657	-		GFF368	0.33	-1.3
360,657	-		GFF368	0.33	+0.3
360,657	-		GFF368	0.33	-0.2
360,657	-		GFF368	0.33	+0.5
360,672	+		GFF368	0.35	-0.4
360,675	+		GFF368	0.35	+1.5
360,698	-		GFF368	0.37	+0.7
360,709	+		GFF368	0.38	+0.7
360,729	+		GFF368	0.40	+1.3
360,729	+		GFF368	0.40	+0.6
360,730	+		GFF368	0.40	-0.2
360,735	+		GFF368	0.41	-0.4
360,752	+		GFF368	0.42	-0.5
360,755	-		GFF368	0.43	-1.0
360,800	+		GFF368	0.47	+1.5
360,802	+		GFF368	0.47	-0.0
360,808	-		GFF368	0.48	-1.8
360,827	-		GFF368	0.49	+1.3
360,827	-		GFF368	0.49	+1.0
360,828	-		GFF368	0.50	-1.0
360,857	-		GFF368	0.52	-1.3
360,869	+		GFF368	0.53	+1.1
360,877	-		GFF368	0.54	-1.3
360,903	+		GFF368	0.57	-0.2
360,907	-		GFF368	0.57	+0.6
360,908	+		GFF368	0.57	-1.0
360,908	+		GFF368	0.57	+0.2
360,908	+		GFF368	0.57	-0.3
360,908	+		GFF368	0.57	-0.6
360,909	+		GFF368	0.57	-0.8
360,916	-		GFF368	0.58	+0.4
360,919	-		GFF368	0.58	-1.3
360,933	+		GFF368	0.60	-0.6
360,936	-		GFF368	0.60	+0.4
360,941	-		GFF368	0.60	-0.2
360,944	+		GFF368	0.61	-0.2
360,944	+		GFF368	0.61	-0.2
360,959	-		GFF368	0.62	-0.4
360,965	-		GFF368	0.63	+0.4
360,971	+		GFF368	0.63	+1.2
360,971	+		GFF368	0.63	+0.3