Strain Fitness in Sphingobium sp. HT1-2 around GFF359

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF357 and GFF358 are separated by 83 nucleotidesGFF358 and GFF359 are separated by 12 nucleotidesGFF359 and GFF360 overlap by 4 nucleotidesGFF360 and GFF361 are separated by 102 nucleotides GFF357 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 349,296 to 349,736 GFF357 GFF358 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 349,820 to 350,308 GFF358 GFF359 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 350,321 to 351,673 GFF359 GFF360 - Uncharacterized protein YfgD, not an arsenate reductase, at 351,670 to 352,014 GFF360 GFF361 - ParA-like protein, at 352,117 to 352,848 GFF361 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 349.338 kb on - strandat 349.608 kb on - strand, within GFF357at 349.678 kb on - strand, within GFF357at 349.722 kb on + strandat 349.730 kb on - strandat 349.730 kb on - strandat 349.730 kb on - strandat 349.731 kb on + strandat 349.731 kb on + strandat 349.731 kb on - strandat 349.733 kb on + strandat 349.748 kb on - strandat 351.636 kb on + strandat 351.668 kb on - strandat 351.678 kb on - strandat 351.678 kb on - strandat 351.684 kb on - strandat 351.694 kb on + strandat 351.702 kb on - strandat 351.719 kb on - strand, within GFF360at 351.746 kb on + strand, within GFF360at 351.752 kb on + strand, within GFF360at 351.753 kb on + strand, within GFF360at 351.760 kb on - strand, within GFF360at 351.771 kb on + strand, within GFF360at 351.780 kb on - strand, within GFF360at 351.800 kb on - strand, within GFF360at 351.820 kb on + strand, within GFF360at 351.824 kb on + strand, within GFF360at 351.852 kb on + strand, within GFF360at 351.863 kb on + strand, within GFF360at 351.868 kb on + strand, within GFF360at 351.871 kb on - strand, within GFF360at 351.880 kb on + strand, within GFF360at 351.899 kb on + strand, within GFF360at 351.901 kb on - strand, within GFF360at 351.942 kb on - strand, within GFF360at 351.990 kb on + strandat 351.990 kb on + strandat 351.990 kb on + strandat 351.998 kb on - strandat 351.998 kb on - strandat 351.998 kb on - strandat 351.998 kb on - strandat 351.998 kb on - strandat 352.073 kb on - strandat 352.082 kb on - strandat 352.114 kb on + strandat 352.117 kb on - strandat 352.139 kb on + strandat 352.147 kb on - strandat 352.147 kb on - strandat 352.185 kb on - strandat 352.202 kb on - strand, within GFF361at 352.210 kb on - strand, within GFF361at 352.210 kb on - strand, within GFF361at 352.221 kb on + strand, within GFF361at 352.221 kb on + strand, within GFF361at 352.221 kb on + strand, within GFF361at 352.221 kb on + strand, within GFF361at 352.229 kb on - strand, within GFF361at 352.229 kb on - strand, within GFF361at 352.229 kb on - strand, within GFF361at 352.231 kb on + strand, within GFF361at 352.246 kb on + strand, within GFF361at 352.252 kb on + strand, within GFF361at 352.260 kb on + strand, within GFF361at 352.260 kb on + strand, within GFF361at 352.268 kb on - strand, within GFF361at 352.268 kb on - strand, within GFF361at 352.273 kb on - strand, within GFF361at 352.273 kb on - strand, within GFF361at 352.288 kb on - strand, within GFF361at 352.291 kb on + strand, within GFF361at 352.291 kb on + strand, within GFF361at 352.291 kb on + strand, within GFF361at 352.296 kb on + strand, within GFF361at 352.298 kb on - strand, within GFF361at 352.299 kb on - strand, within GFF361at 352.321 kb on - strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.338 kb on + strand, within GFF361at 352.340 kb on - strand, within GFF361at 352.341 kb on - strand, within GFF361at 352.343 kb on + strand, within GFF361at 352.346 kb on - strand, within GFF361at 352.346 kb on - strand, within GFF361at 352.349 kb on + strand, within GFF361at 352.354 kb on + strand, within GFF361at 352.354 kb on + strand, within GFF361at 352.355 kb on + strand, within GFF361at 352.355 kb on + strand, within GFF361at 352.355 kb on + strand, within GFF361at 352.355 kb on + strand, within GFF361at 352.355 kb on + strand, within GFF361at 352.359 kb on + strand, within GFF361at 352.362 kb on - strand, within GFF361at 352.363 kb on - strand, within GFF361at 352.363 kb on - strand, within GFF361at 352.363 kb on - strand, within GFF361at 352.363 kb on - strand, within GFF361at 352.365 kb on + strand, within GFF361at 352.386 kb on + strand, within GFF361at 352.386 kb on + strand, within GFF361at 352.386 kb on + strand, within GFF361at 352.391 kb on + strand, within GFF361at 352.399 kb on - strand, within GFF361at 352.399 kb on - strand, within GFF361at 352.434 kb on + strand, within GFF361at 352.462 kb on + strand, within GFF361at 352.462 kb on + strand, within GFF361at 352.463 kb on - strand, within GFF361at 352.470 kb on - strand, within GFF361at 352.476 kb on - strand, within GFF361at 352.498 kb on - strand, within GFF361at 352.501 kb on + strand, within GFF361at 352.519 kb on + strand, within GFF361at 352.522 kb on - strand, within GFF361at 352.529 kb on + strand, within GFF361at 352.529 kb on + strand, within GFF361at 352.537 kb on - strand, within GFF361at 352.537 kb on - strand, within GFF361at 352.537 kb on - strand, within GFF361at 352.537 kb on - strand, within GFF361at 352.556 kb on + strand, within GFF361at 352.562 kb on - strand, within GFF361at 352.584 kb on + strand, within GFF361at 352.592 kb on - strand, within GFF361at 352.592 kb on - strand, within GFF361at 352.599 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.601 kb on + strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.609 kb on - strand, within GFF361at 352.614 kb on - strand, within GFF361at 352.636 kb on - strand, within GFF361at 352.646 kb on + strand, within GFF361at 352.662 kb on - strand, within GFF361

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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349,338 - -1.3
349,608 - GFF357 0.71 -1.4
349,678 - GFF357 0.87 -1.2
349,722 + +0.9
349,730 - -1.3
349,730 - +0.1
349,730 - -0.8
349,731 + -1.1
349,731 + -0.2
349,731 - -1.2
349,733 + +0.8
349,748 - +1.2
351,636 + +1.2
351,668 - -2.4
351,678 - -0.7
351,678 - +0.9
351,684 - +0.5
351,694 + +1.1
351,702 - +0.1
351,719 - GFF360 0.14 -2.6
351,746 + GFF360 0.22 -1.3
351,752 + GFF360 0.24 -0.5
351,753 + GFF360 0.24 -0.6
351,760 - GFF360 0.26 -2.4
351,771 + GFF360 0.29 +0.7
351,780 - GFF360 0.32 -1.0
351,800 - GFF360 0.38 +0.5
351,820 + GFF360 0.43 +0.4
351,824 + GFF360 0.45 -1.9
351,852 + GFF360 0.53 -0.0
351,863 + GFF360 0.56 -0.9
351,868 + GFF360 0.57 +0.3
351,871 - GFF360 0.58 -0.3
351,880 + GFF360 0.61 +0.7
351,899 + GFF360 0.66 -2.0
351,901 - GFF360 0.67 -1.6
351,942 - GFF360 0.79 -0.4
351,990 + +0.6
351,990 + -2.0
351,990 + -1.0
351,998 - -0.1
351,998 - +0.1
351,998 - +0.3
351,998 - -0.5
351,998 - +1.5
352,073 - +0.8
352,082 - -0.6
352,114 + -1.7
352,117 - +0.7
352,139 + -0.1
352,147 - +0.6
352,147 - -2.3
352,185 - -2.3
352,202 - GFF361 0.12 -3.0
352,210 - GFF361 0.13 +0.1
352,210 - GFF361 0.13 +0.9
352,221 + GFF361 0.14 -0.4
352,221 + GFF361 0.14 +1.3
352,221 + GFF361 0.14 -0.7
352,221 + GFF361 0.14 +1.6
352,229 - GFF361 0.15 -0.8
352,229 - GFF361 0.15 +1.4
352,229 - GFF361 0.15 -0.2
352,231 + GFF361 0.16 +1.5
352,246 + GFF361 0.18 -0.6
352,252 + GFF361 0.18 -0.2
352,260 + GFF361 0.20 +0.1
352,260 + GFF361 0.20 -0.1
352,268 - GFF361 0.21 +0.6
352,268 - GFF361 0.21 -0.0
352,273 - GFF361 0.21 +1.1
352,273 - GFF361 0.21 -1.8
352,288 - GFF361 0.23 +0.5
352,291 + GFF361 0.24 +0.8
352,291 + GFF361 0.24 +0.7
352,291 + GFF361 0.24 -0.2
352,296 + GFF361 0.24 -0.7
352,298 - GFF361 0.25 +0.3
352,299 - GFF361 0.25 -1.1
352,321 - GFF361 0.28 +0.8
352,338 + GFF361 0.30 +0.2
352,338 + GFF361 0.30 -1.7
352,338 + GFF361 0.30 +0.7
352,338 + GFF361 0.30 -0.5
352,338 + GFF361 0.30 -1.9
352,338 + GFF361 0.30 -1.2
352,338 + GFF361 0.30 +0.0
352,338 + GFF361 0.30 +0.1
352,340 - GFF361 0.30 +0.6
352,341 - GFF361 0.31 +0.8
352,343 + GFF361 0.31 -2.0
352,346 - GFF361 0.31 +0.0
352,346 - GFF361 0.31 +0.7
352,349 + GFF361 0.32 -1.7
352,354 + GFF361 0.32 -1.9
352,354 + GFF361 0.32 +0.5
352,355 + GFF361 0.33 +0.3
352,355 + GFF361 0.33 -0.4
352,355 + GFF361 0.33 +0.0
352,355 + GFF361 0.33 -1.7
352,355 + GFF361 0.33 -2.7
352,359 + GFF361 0.33 -1.8
352,362 - GFF361 0.33 -0.2
352,363 - GFF361 0.34 -0.2
352,363 - GFF361 0.34 -0.5
352,363 - GFF361 0.34 -1.8
352,363 - GFF361 0.34 +0.0
352,365 + GFF361 0.34 -1.8
352,386 + GFF361 0.37 -0.1
352,386 + GFF361 0.37 -0.2
352,386 + GFF361 0.37 -0.3
352,391 + GFF361 0.37 +0.2
352,399 - GFF361 0.39 -2.0
352,399 - GFF361 0.39 -0.3
352,434 + GFF361 0.43 -0.4
352,462 + GFF361 0.47 +1.0
352,462 + GFF361 0.47 +0.1
352,463 - GFF361 0.47 +0.2
352,470 - GFF361 0.48 -2.2
352,476 - GFF361 0.49 +1.3
352,498 - GFF361 0.52 +0.3
352,501 + GFF361 0.52 -2.6
352,519 + GFF361 0.55 +0.6
352,522 - GFF361 0.55 -0.1
352,529 + GFF361 0.56 -0.2
352,529 + GFF361 0.56 +0.4
352,537 - GFF361 0.57 +0.0
352,537 - GFF361 0.57 -0.7
352,537 - GFF361 0.57 -1.4
352,537 - GFF361 0.57 -0.4
352,556 + GFF361 0.60 +0.5
352,562 - GFF361 0.61 -1.5
352,584 + GFF361 0.64 -0.3
352,592 - GFF361 0.65 -0.5
352,592 - GFF361 0.65 +0.3
352,599 + GFF361 0.66 +1.0
352,601 + GFF361 0.66 -1.3
352,601 + GFF361 0.66 -1.1
352,601 + GFF361 0.66 -0.7
352,601 + GFF361 0.66 -1.3
352,601 + GFF361 0.66 +0.6
352,601 + GFF361 0.66 -0.5
352,601 + GFF361 0.66 +1.0
352,601 + GFF361 0.66 -0.5
352,609 - GFF361 0.67 +0.8
352,609 - GFF361 0.67 -0.7
352,609 - GFF361 0.67 -1.5
352,609 - GFF361 0.67 -0.2
352,609 - GFF361 0.67 +2.2
352,609 - GFF361 0.67 +1.2
352,609 - GFF361 0.67 -1.0
352,609 - GFF361 0.67 +0.9
352,609 - GFF361 0.67 -2.2
352,614 - GFF361 0.68 -1.2
352,636 - GFF361 0.71 -0.8
352,646 + GFF361 0.72 -1.4
352,662 - GFF361 0.74 -0.1

Or see this region's nucleotide sequence