Strain Fitness in Sphingobium sp. HT1-2 around GFF3584

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,629,163	-				-2.0
3,629,182	+				+1.2
3,629,203	-				+0.4
3,629,211	+		GFF3582	0.10	-0.0
3,629,216	+		GFF3582	0.11	-0.2
3,629,216	+		GFF3582	0.11	-0.2
3,629,216	+		GFF3582	0.11	-1.8
3,629,216	+		GFF3582	0.11	+0.5
3,629,224	-		GFF3582	0.12	-0.6
3,629,235	+		GFF3582	0.14	+0.4
3,629,249	+		GFF3582	0.16	-0.7
3,629,249	+		GFF3582	0.16	+0.7
3,629,257	-		GFF3582	0.18	+0.1
3,629,285	+		GFF3582	0.22	+0.4
3,629,285	+		GFF3582	0.22	+0.8
3,629,309	-		GFF3582	0.26	-1.2
3,629,319	+		GFF3582	0.28	-0.3
3,629,357	-		GFF3582	0.35	-0.8
3,629,375	+		GFF3582	0.38	-0.2
3,629,385	+		GFF3582	0.39	-2.0
3,629,393	-		GFF3582	0.41	-1.2
3,629,419	+		GFF3582	0.45	-0.5
3,629,427	-		GFF3582	0.46	-0.0
3,629,438	+		GFF3582	0.48	-0.5
3,629,438	+		GFF3582	0.48	+1.2
3,629,438	+		GFF3582	0.48	-2.8
3,629,446	-		GFF3582	0.49	-2.1
3,629,477	+		GFF3582	0.55	-0.1
3,629,488	+		GFF3582	0.56	-0.0
3,629,496	-		GFF3582	0.58	-0.9
3,629,528	+		GFF3582	0.63	+0.2
3,629,528	+		GFF3582	0.63	-1.7
3,629,528	+		GFF3582	0.63	+0.1
3,629,528	+		GFF3582	0.63	-0.7
3,629,528	+		GFF3582	0.63	-0.5
3,629,528	+		GFF3582	0.63	+1.0
3,629,533	+		GFF3582	0.64	+0.7
3,629,588	+		GFF3582	0.73	+0.5
3,629,588	+		GFF3582	0.73	-0.6
3,629,606	+		GFF3582	0.76	+0.5
3,629,606	+		GFF3582	0.76	+1.2
3,629,614	-		GFF3582	0.78	+0.4
3,629,625	+		GFF3582	0.79	+0.3
3,629,635	-		GFF3582	0.81	-0.7
3,629,671	+		GFF3582	0.87	-0.3
3,629,688	+				+0.2
3,629,711	-				-1.2
3,629,726	+				-0.5
3,629,726	+				-0.0
3,629,772	+				-0.3
3,629,805	+				-1.8
3,629,805	+				+0.5
3,629,810	+				-2.5
3,629,813	-				-2.3
3,629,813	-				+0.3
3,629,813	-				+0.0
3,629,815	+				-1.7
3,629,815	+				-1.7
3,629,815	+				-1.2
3,629,815	+				+1.0
3,629,818	-				-0.2
3,629,820	+				-1.5
3,629,820	+				-1.8
3,629,820	+				-1.8
3,629,820	+				+0.2
3,629,820	+				-0.5
3,629,820	+				-1.6
3,629,823	-				-0.4
3,629,823	-				+0.1
3,629,823	-				-1.5
3,629,824	+				-1.1
3,629,828	-				+1.0
3,629,828	-				-0.8
3,629,828	-				-0.0
3,629,840	-				+0.2
3,629,855	+				-1.7
3,629,871	+		GFF3583	0.14	-1.3
3,629,875	+		GFF3583	0.16	-1.6
3,629,895	+		GFF3583	0.23	-1.3
3,629,895	+		GFF3583	0.23	-0.3
3,629,895	+		GFF3583	0.23	-0.2
3,629,895	+		GFF3583	0.23	-1.2
3,629,903	-		GFF3583	0.25	+0.3
3,629,903	-		GFF3583	0.25	-0.9
3,629,903	-		GFF3583	0.25	-0.5
3,629,945	+		GFF3583	0.39	+0.5
3,629,945	+		GFF3583	0.39	-0.7
3,629,945	+		GFF3583	0.39	-0.8
3,629,945	+		GFF3583	0.39	+0.8
3,629,951	-		GFF3583	0.41	-1.3
3,629,951	-		GFF3583	0.41	-0.2
3,629,952	+		GFF3583	0.42	+0.2
3,629,953	-		GFF3583	0.42	+0.4
3,629,953	-		GFF3583	0.42	+0.0
3,629,953	-		GFF3583	0.42	-0.3
3,629,953	-		GFF3583	0.42	+0.6
3,629,965	-		GFF3583	0.46	+0.1
3,629,970	-		GFF3583	0.48	-2.1
3,629,978	+		GFF3583	0.51	-0.6
3,629,978	+		GFF3583	0.51	+0.8
3,629,978	+		GFF3583	0.51	+0.8
3,629,978	+		GFF3583	0.51	+3.0
3,629,978	+		GFF3583	0.51	+1.0
3,629,978	+		GFF3583	0.51	+0.4
3,629,978	+		GFF3583	0.51	-0.2
3,629,986	-		GFF3583	0.53	+0.5
3,629,986	-		GFF3583	0.53	-0.3
3,629,986	-		GFF3583	0.53	-0.0
3,629,986	-		GFF3583	0.53	-1.2
3,629,998	+		GFF3583	0.57	+0.6
3,630,006	-		GFF3583	0.60	-0.4
3,630,006	-		GFF3583	0.60	-0.2
3,630,006	-		GFF3583	0.60	+0.7
3,630,021	-		GFF3583	0.65	-2.0
3,630,031	-		GFF3583	0.68	-1.2
3,630,031	-		GFF3583	0.68	-1.4
3,630,031	-		GFF3583	0.68	+0.0
3,630,031	-		GFF3583	0.68	+0.3
3,630,033	+		GFF3583	0.69	-0.9
3,630,033	+		GFF3583	0.69	-0.0
3,630,036	-		GFF3583	0.70	-0.3
3,630,038	+		GFF3583	0.71	-1.3
3,630,041	-		GFF3583	0.72	-2.0
3,630,041	-		GFF3583	0.72	-1.2
3,630,041	-		GFF3583	0.72	+0.5
3,630,041	-		GFF3583	0.72	+0.7
3,630,041	-		GFF3583	0.72	-0.6
3,630,043	+		GFF3583	0.72	+0.9
3,630,046	-		GFF3583	0.73	+0.6
3,630,069	+		GFF3583	0.81	+1.1
3,630,069	+		GFF3583	0.81	-0.1
3,630,077	+		GFF3583	0.84	-0.5
3,630,079	+		GFF3583	0.85	-1.2
3,630,103	-				-0.7
3,630,113	+				-1.5
3,630,122	-				+0.4
3,630,122	-				-0.8
3,630,122	-				-1.3
3,630,127	-				-0.8
3,630,147	-				-0.9
3,630,148	-				+0.7
3,630,149	+				-2.1
3,630,171	+				-2.3
3,630,173	+				-0.5
3,630,184	+				-2.2
3,630,184	+				-0.9
3,630,185	-				-1.2
3,630,187	+				-2.2
3,630,187	+				-0.1
3,630,187	+				-1.6
3,630,195	-				-0.2
3,630,195	-				+0.3
3,630,195	-				-0.6
3,630,197	+				-0.5
3,630,221	-		GFF3584	0.14	-0.3
3,630,226	+		GFF3584	0.15	-1.8
3,630,226	+		GFF3584	0.15	-2.3
3,630,231	+		GFF3584	0.16	-1.8
3,630,231	+		GFF3584	0.16	-0.5
3,630,234	-		GFF3584	0.17	+0.1
3,630,234	-		GFF3584	0.17	-3.1
3,630,234	-		GFF3584	0.17	-0.1
3,630,238	+		GFF3584	0.18	+1.5
3,630,246	+		GFF3584	0.20	-0.9
3,630,246	+		GFF3584	0.20	+1.0
3,630,246	+		GFF3584	0.20	-0.2
3,630,246	+		GFF3584	0.20	+0.2
3,630,246	+		GFF3584	0.20	-0.4
3,630,246	+		GFF3584	0.20	-0.9
3,630,248	+		GFF3584	0.20	+0.6
3,630,251	+		GFF3584	0.21	-1.3
3,630,254	-		GFF3584	0.22	+0.1
3,630,254	-		GFF3584	0.22	+1.3
3,630,254	-		GFF3584	0.22	+0.1
3,630,254	-		GFF3584	0.22	-0.4
3,630,254	-		GFF3584	0.22	+0.4
3,630,256	-		GFF3584	0.22	+0.7
3,630,256	-		GFF3584	0.22	-1.5
3,630,262	+		GFF3584	0.23	+0.2
3,630,262	+		GFF3584	0.23	-1.3
3,630,262	+		GFF3584	0.23	-2.2
3,630,262	+		GFF3584	0.23	-1.3
3,630,264	-		GFF3584	0.24	-1.5
3,630,264	-		GFF3584	0.24	-0.3
3,630,264	-		GFF3584	0.24	-1.7
3,630,282	-		GFF3584	0.28	-0.5
3,630,283	+		GFF3584	0.28	-0.5
3,630,283	+		GFF3584	0.28	+0.7
3,630,283	+		GFF3584	0.28	+0.4
3,630,291	-		GFF3584	0.30	+0.3
3,630,291	-		GFF3584	0.30	-0.0
3,630,291	-		GFF3584	0.30	-0.3
3,630,293	+		GFF3584	0.30	-0.2
3,630,293	+		GFF3584	0.30	-1.6
3,630,303	+		GFF3584	0.33	+0.2
3,630,303	+		GFF3584	0.33	+0.8
3,630,303	+		GFF3584	0.33	-0.6
3,630,306	-		GFF3584	0.33	-0.7
3,630,306	-		GFF3584	0.33	+0.0
3,630,329	+		GFF3584	0.39	-0.8
3,630,334	+		GFF3584	0.40	+0.1
3,630,334	+		GFF3584	0.40	-1.2
3,630,334	+		GFF3584	0.40	+0.9
3,630,334	+		GFF3584	0.40	-0.9
3,630,334	+		GFF3584	0.40	-0.2
3,630,336	+		GFF3584	0.40	+0.9
3,630,336	+		GFF3584	0.40	-0.8
3,630,337	-		GFF3584	0.40	+0.5
3,630,342	-		GFF3584	0.41	-1.2
3,630,342	-		GFF3584	0.41	-0.6
3,630,342	-		GFF3584	0.41	-0.2
3,630,342	-		GFF3584	0.41	+0.1
3,630,354	-		GFF3584	0.44	-2.7
3,630,356	+		GFF3584	0.45	-0.3
3,630,356	+		GFF3584	0.45	+0.5
3,630,356	+		GFF3584	0.45	+0.5
3,630,356	+		GFF3584	0.45	-1.9
3,630,356	+		GFF3584	0.45	-0.2
3,630,361	+		GFF3584	0.46	-0.9
3,630,364	-		GFF3584	0.46	+1.1
3,630,364	-		GFF3584	0.46	-2.1
3,630,364	-		GFF3584	0.46	-1.7
3,630,366	+		GFF3584	0.47	-0.3
3,630,374	-		GFF3584	0.49	-0.2
3,630,385	+		GFF3584	0.51	+0.1
3,630,390	+		GFF3584	0.52	+0.9
3,630,390	+		GFF3584	0.52	-0.5
3,630,390	+		GFF3584	0.52	-0.0
3,630,392	+		GFF3584	0.53	+0.6
3,630,392	+		GFF3584	0.53	+0.9
3,630,393	-		GFF3584	0.53	-2.0
3,630,393	-		GFF3584	0.53	-1.2
3,630,393	-		GFF3584	0.53	+0.6
3,630,393	-		GFF3584	0.53	+0.5
3,630,395	+		GFF3584	0.54	-0.8
3,630,395	+		GFF3584	0.54	-1.9
3,630,398	-		GFF3584	0.54	+0.2
3,630,398	-		GFF3584	0.54	+0.7
3,630,398	-		GFF3584	0.54	-2.8
3,630,398	-		GFF3584	0.54	-0.3
3,630,398	-		GFF3584	0.54	-1.0
3,630,398	-		GFF3584	0.54	-0.9
3,630,403	-		GFF3584	0.55	-0.1
3,630,414	-		GFF3584	0.58	-0.8
3,630,415	-		GFF3584	0.58	-0.2
3,630,430	+		GFF3584	0.61	-2.5
3,630,436	+		GFF3584	0.63	-0.3
3,630,436	+		GFF3584	0.63	+0.3
3,630,436	+		GFF3584	0.63	-0.8
3,630,444	-		GFF3584	0.65	-0.6
3,630,453	+		GFF3584	0.67	+0.7
3,630,453	+		GFF3584	0.67	-1.5
3,630,453	+		GFF3584	0.67	-1.3
3,630,453	+		GFF3584	0.67	+0.2
3,630,458	+		GFF3584	0.68	-1.6
3,630,461	-		GFF3584	0.68	+0.1
3,630,461	-		GFF3584	0.68	-0.8
3,630,463	+		GFF3584	0.69	+0.0
3,630,471	-		GFF3584	0.71	-0.4
3,630,471	-		GFF3584	0.71	-1.5
3,630,471	-		GFF3584	0.71	-0.9
3,630,471	-		GFF3584	0.71	-1.8
3,630,478	-		GFF3584	0.72	+0.8
3,630,487	-		GFF3584	0.74	-0.9
3,630,489	+		GFF3584	0.75	+2.0
3,630,490	+		GFF3584	0.75	-2.6
3,630,495	+		GFF3584	0.76	-0.1
3,630,497	-		GFF3584	0.77	-0.9
3,630,498	-		GFF3584	0.77	-1.2
3,630,523	-		GFF3584	0.83	-0.5
3,630,528	+		GFF3584	0.84	-0.5
3,630,528	+		GFF3584	0.84	+1.1
3,630,528	+		GFF3584	0.84	-1.5
3,630,530	+		GFF3584	0.84	-0.2
3,630,531	-		GFF3584	0.84	+0.0
3,630,535	+		GFF3584	0.85	-2.0
3,630,535	+		GFF3584	0.85	+0.7
3,630,535	+		GFF3584	0.85	-1.1
3,630,535	+		GFF3584	0.85	-0.8
3,630,535	+		GFF3584	0.85	+0.3
3,630,536	-		GFF3584	0.85	+0.1
3,630,542	+		GFF3584	0.87	-0.8
3,630,542	+		GFF3584	0.87	-0.4
3,630,542	+		GFF3584	0.87	-1.2
3,630,543	-		GFF3584	0.87	+0.1
3,630,550	+		GFF3584	0.89	-2.0
3,630,550	-		GFF3584	0.89	+0.1
3,630,550	-		GFF3584	0.89	-0.1
3,630,550	-		GFF3584	0.89	-0.6
3,630,550	-		GFF3584	0.89	-0.8
3,630,550	-		GFF3584	0.89	-1.6
3,630,550	-		GFF3584	0.89	-1.6
3,630,550	-		GFF3584	0.89	-0.3
3,630,558	-				+0.8
3,630,558	-				+0.0
3,630,558	-				+0.8
3,630,558	-				+1.4
3,630,558	-				-0.8
3,630,558	-				-0.2
3,630,564	+				-1.6
3,630,564	+				+0.4
3,630,564	+				+1.2
3,630,569	+				-0.0
3,630,569	+				-0.8
3,630,569	+				-1.3
3,630,569	+				+0.4
3,630,569	+				+0.8
3,630,569	+				-1.0
3,630,569	+				-0.0
3,630,569	+				+0.2
3,630,569	+				-2.3
3,630,577	-				-1.3
3,630,577	-				-1.3
3,630,589	+				-1.7
3,630,615	+				-0.1
3,630,615	+				+0.6
3,630,615	+				-0.6
3,630,615	+				+0.1
3,630,615	+				-1.2
3,630,615	+				+0.4
3,630,623	-				-1.2
3,630,635	+				-0.3
3,630,643	+				-1.3
3,630,644	-				-0.3
3,630,644	-				-1.5
3,630,644	-				-1.7
3,630,651	-				-1.3
3,630,706	-				-1.3
3,630,706	-				-0.6
3,630,708	-				-0.6
3,630,708	-				+1.2
3,630,713	-				-1.7
3,630,752	-				-1.8
3,630,771	+				-1.2
3,630,788	+		GFF3585	0.11	-0.2
3,630,796	-		GFF3585	0.12	-2.3
3,630,846	+		GFF3585	0.19	+0.8
3,630,846	+		GFF3585	0.19	-0.2
3,630,857	+		GFF3585	0.21	-1.8
3,630,910	-		GFF3585	0.29	-0.2
3,630,955	-		GFF3585	0.36	+0.7
3,630,957	+		GFF3585	0.36	-0.6
3,630,957	+		GFF3585	0.36	+0.2
3,630,957	+		GFF3585	0.36	-0.5
3,630,965	-		GFF3585	0.37	+0.8
3,630,966	-		GFF3585	0.37	+0.8
3,630,966	-		GFF3585	0.37	-0.6
3,631,005	-		GFF3585	0.43	+0.8
3,631,038	+		GFF3585	0.48	-1.1
3,631,038	+		GFF3585	0.48	-1.5
3,631,043	+		GFF3585	0.49	-1.0
3,631,046	-		GFF3585	0.49	-0.1
3,631,046	-		GFF3585	0.49	-2.6
3,631,065	-		GFF3585	0.52	+0.5
3,631,084	-		GFF3585	0.55	-0.3
3,631,086	+		GFF3585	0.55	+0.5
3,631,088	-		GFF3585	0.56	-0.2
3,631,094	-		GFF3585	0.56	+0.4
3,631,105	-		GFF3585	0.58	-2.7
3,631,110	+		GFF3585	0.59	+0.5
3,631,123	-		GFF3585	0.61	+0.1
3,631,123	-		GFF3585	0.61	+1.0
3,631,123	-		GFF3585	0.61	-0.1
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3,631,328	+				+0.1
3,631,336	-				-2.0
3,631,343	-				-1.5
3,631,343	-				-0.9
3,631,355	+				-0.7
3,631,359	+				-0.3
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3,631,380	+				+0.8
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