Strain Fitness in Sphingobium sp. HT1-2 around GFF3533

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,577,144	+		GFF3531	0.75	+0.4
3,577,147	-		GFF3531	0.76	-2.2
3,577,168	+		GFF3531	0.77	+1.1
3,577,173	+		GFF3531	0.77	+1.0
3,577,222	+		GFF3531	0.81	+0.2
3,577,222	+		GFF3531	0.81	-2.5
3,577,222	+		GFF3531	0.81	+0.8
3,577,230	-		GFF3531	0.82	-0.9
3,577,230	-		GFF3531	0.82	-1.0
3,577,236	-		GFF3531	0.82	-2.2
3,577,240	-		GFF3531	0.82	-2.1
3,577,240	-		GFF3531	0.82	+1.0
3,577,260	-		GFF3531	0.84	-0.3
3,577,272	+		GFF3531	0.85	+0.9
3,577,279	+		GFF3531	0.85	-0.2
3,577,284	+		GFF3531	0.85	-0.6
3,577,287	-		GFF3531	0.86	-0.8
3,577,287	-		GFF3531	0.86	+0.7
3,577,313	+		GFF3531	0.87	-0.2
3,577,320	+		GFF3531	0.88	+0.2
3,577,320	+		GFF3531	0.88	-0.8
3,577,321	-		GFF3531	0.88	-0.5
3,577,323	-		GFF3531	0.88	-2.0
3,577,323	-		GFF3531	0.88	-1.4
3,577,328	-		GFF3531	0.89	+0.6
3,577,369	+				+0.4
3,577,369	+				-1.9
3,577,377	-				-2.5
3,577,413	-				-0.4
3,577,413	-				-1.2
3,577,417	-				-1.8
3,577,461	-				-1.4
3,577,461	-				+1.0
3,577,485	+				-0.7
3,577,507	+				+0.4
3,577,507	-				-0.4
3,577,511	+				-0.8
3,577,511	+				+0.3
3,577,511	+				-1.8
3,577,514	-				+1.9
3,577,518	+				-0.2
3,577,519	-				+2.4
3,577,521	-				+0.4
3,577,543	+				-0.9
3,577,548	+				+0.5
3,577,548	+				-0.3
3,577,551	-				-0.7
3,577,551	-				+1.6
3,577,551	-				-0.4
3,577,556	-				-0.9
3,577,569	-				-0.6
3,577,618	+				-0.6
3,577,665	-				+0.2
3,577,674	-				+1.1
3,577,687	-				+0.6
3,577,741	+		GFF3532	0.17	-0.4
3,577,741	+		GFF3532	0.17	+0.8
3,577,741	+		GFF3532	0.17	+0.7
3,577,741	+		GFF3532	0.17	-0.4
3,577,741	+		GFF3532	0.17	-0.5
3,577,741	+		GFF3532	0.17	-1.7
3,577,746	+		GFF3532	0.18	+1.9
3,577,754	-		GFF3532	0.20	+0.6
3,577,758	+		GFF3532	0.21	-0.5
3,577,786	-		GFF3532	0.27	+0.7
3,577,786	-		GFF3532	0.27	-0.7
3,577,790	+		GFF3532	0.28	+1.1
3,577,795	+		GFF3532	0.29	-0.5
3,577,802	+		GFF3532	0.31	-0.8
3,577,803	-		GFF3532	0.31	-1.0
3,577,808	+		GFF3532	0.32	+0.5
3,577,808	+		GFF3532	0.32	-1.1
3,577,808	+		GFF3532	0.32	+0.1
3,577,808	+		GFF3532	0.32	+0.6
3,577,809	+		GFF3532	0.32	+0.3
3,577,816	-		GFF3532	0.34	-0.2
3,577,816	-		GFF3532	0.34	-1.2
3,577,823	+		GFF3532	0.35	-0.7
3,577,844	+		GFF3532	0.40	+1.0
3,577,889	+		GFF3532	0.50	-1.4
3,577,889	+		GFF3532	0.50	+0.8
3,577,889	+		GFF3532	0.50	-0.4
3,577,889	+		GFF3532	0.50	-0.8
3,577,889	+		GFF3532	0.50	-0.8
3,577,890	-		GFF3532	0.50	-2.0
3,577,897	-		GFF3532	0.52	+0.6
3,577,897	-		GFF3532	0.52	+0.1
3,577,897	-		GFF3532	0.52	-0.4
3,577,897	-		GFF3532	0.52	-1.1
3,577,901	-		GFF3532	0.52	+0.7
3,577,915	-		GFF3532	0.55	-0.2
3,577,939	+		GFF3532	0.61	-1.2
3,577,990	+		GFF3532	0.72	+0.3
3,577,990	+		GFF3532	0.72	-1.5
3,577,990	+		GFF3532	0.72	-0.4
3,577,990	+		GFF3532	0.72	-0.8
3,577,990	+		GFF3532	0.72	-0.6
3,577,990	+		GFF3532	0.72	-0.3
3,577,990	+		GFF3532	0.72	-0.1
3,577,990	+		GFF3532	0.72	-1.4
3,577,990	+		GFF3532	0.72	-0.7
3,577,990	+		GFF3532	0.72	+1.1
3,577,998	-		GFF3532	0.74	-0.7
3,577,998	-		GFF3532	0.74	-0.3
3,578,013	+		GFF3532	0.77	+0.5
3,578,013	+		GFF3532	0.77	-0.9
3,578,021	-		GFF3532	0.79	-0.5
3,578,021	-		GFF3532	0.79	-1.0
3,578,035	+		GFF3532	0.82	-0.3
3,578,061	+		GFF3532	0.88	-0.5
3,578,082	-				+0.7
3,578,120	+				+0.3
3,578,128	+				+0.8
3,578,128	-				+0.3
3,578,133	-				-0.5
3,578,153	-				-1.2
3,578,163	+				+0.2
3,578,173	+				+0.9
3,578,173	+				+1.3
3,578,173	+				-0.5
3,578,173	+				-1.0
3,578,173	+				+1.5
3,578,173	+				-1.7
3,578,181	-				+0.4
3,578,181	-				-0.6
3,578,252	-				-0.9
3,578,260	+				+0.3
3,578,289	-				-2.0
3,578,325	+				-0.9
3,578,325	+				+0.1
3,578,325	+				-0.6
3,578,325	+				+0.1
3,578,326	+				-1.5
3,578,333	-				-2.1
3,578,333	-				-0.9
3,578,333	-				-0.4
3,578,355	-				-1.4
3,578,367	+				-1.4
3,578,368	+				-0.8
3,578,410	+		GFF3533	0.11	-1.3
3,578,435	+		GFF3533	0.12	-1.4
3,578,435	+		GFF3533	0.12	-1.0
3,578,448	+		GFF3533	0.13	-0.0
3,578,469	+		GFF3533	0.13	-1.0
3,578,488	+		GFF3533	0.14	-0.2
3,578,496	-		GFF3533	0.15	+1.3
3,578,519	-		GFF3533	0.16	-0.5
3,578,550	+		GFF3533	0.17	-1.6
3,578,556	+		GFF3533	0.17	+1.4
3,578,574	+		GFF3533	0.18	+0.5
3,578,574	+		GFF3533	0.18	+1.4
3,578,575	+		GFF3533	0.18	+0.1
3,578,582	-		GFF3533	0.18	+0.3
3,578,682	-		GFF3533	0.22	+0.5
3,578,775	-		GFF3533	0.26	-0.0
3,578,775	-		GFF3533	0.26	-1.8
3,578,780	-		GFF3533	0.26	-2.0
3,578,815	-		GFF3533	0.28	-0.5
3,578,822	+		GFF3533	0.28	-0.1
3,578,830	-		GFF3533	0.28	-1.2
3,578,830	-		GFF3533	0.28	+0.3
3,578,849	-		GFF3533	0.29	+1.0
3,578,905	+		GFF3533	0.32	+0.5
3,578,988	+		GFF3533	0.35	-0.5
3,578,997	+		GFF3533	0.35	-1.7
3,579,014	+		GFF3533	0.36	+0.2
3,579,072	+		GFF3533	0.38	-0.9
3,579,176	+		GFF3533	0.43	-0.1
3,579,176	+		GFF3533	0.43	-1.0
3,579,202	+		GFF3533	0.44	-0.1
3,579,202	+		GFF3533	0.44	-0.7
3,579,202	+		GFF3533	0.44	-1.2
3,579,202	+		GFF3533	0.44	-0.7
3,579,202	+		GFF3533	0.44	-0.7
3,579,210	-		GFF3533	0.44	-0.6
3,579,210	-		GFF3533	0.44	-0.6
3,579,217	+		GFF3533	0.44	-1.4
3,579,225	-		GFF3533	0.45	-1.7
3,579,227	+		GFF3533	0.45	+0.6
3,579,240	-		GFF3533	0.45	-1.1
3,579,244	+		GFF3533	0.46	+0.6
3,579,247	-		GFF3533	0.46	+0.5
3,579,249	+		GFF3533	0.46	-0.4
3,579,255	+		GFF3533	0.46	+1.0
3,579,257	-		GFF3533	0.46	+0.2
3,579,264	-		GFF3533	0.46	-0.2
3,579,264	-		GFF3533	0.46	+0.3
3,579,301	+		GFF3533	0.48	+0.2
3,579,301	+		GFF3533	0.48	-0.1
3,579,301	+		GFF3533	0.48	-0.1
3,579,309	-		GFF3533	0.48	+0.3
3,579,362	-		GFF3533	0.50	-1.4
3,579,370	+		GFF3533	0.51	+2.1
3,579,370	+		GFF3533	0.51	-0.0
3,579,370	+		GFF3533	0.51	-1.2
3,579,370	+		GFF3533	0.51	-0.4
3,579,375	+		GFF3533	0.51	+0.3
3,579,437	+		GFF3533	0.54	-0.7
3,579,438	+		GFF3533	0.54	-0.2
3,579,445	-		GFF3533	0.54	-0.2
3,579,501	+		GFF3533	0.56	-0.5
3,579,533	+		GFF3533	0.58	+0.8
3,579,533	+		GFF3533	0.58	-2.0
3,579,533	+		GFF3533	0.58	-1.1
3,579,533	+		GFF3533	0.58	+0.4
3,579,550	-		GFF3533	0.58	-1.5
3,579,581	-		GFF3533	0.60	-0.4
3,579,614	+		GFF3533	0.61	+0.8
3,579,614	+		GFF3533	0.61	-1.0
3,579,622	-		GFF3533	0.61	+2.0
3,579,695	+		GFF3533	0.64	+0.3
3,579,803	+		GFF3533	0.69	-0.2
3,579,803	+		GFF3533	0.69	-0.7
3,579,852	+		GFF3533	0.71	-0.3
3,579,855	-		GFF3533	0.71	-1.7
3,579,860	+		GFF3533	0.71	-0.4
3,579,860	-		GFF3533	0.71	+0.3
3,579,875	+		GFF3533	0.72	+0.3
3,579,875	+		GFF3533	0.72	-0.2
3,579,879	+		GFF3533	0.72	+0.2
3,579,885	+		GFF3533	0.72	-1.4
3,579,885	+		GFF3533	0.72	-0.3
3,579,943	+		GFF3533	0.75	-0.4
3,579,943	-		GFF3533	0.75	+0.6
3,579,968	+		GFF3533	0.76	-2.2
3,579,968	+		GFF3533	0.76	-0.2
3,580,114	+		GFF3533	0.82	-0.4
3,580,180	+		GFF3533	0.84	-0.2
3,580,182	-		GFF3533	0.84	-2.0
3,580,209	+		GFF3533	0.86	+0.4
3,580,262	-		GFF3533	0.88	+0.3
3,580,335	-				-0.2
3,580,353	+				-0.1
3,580,355	+				-1.5
3,580,363	-				-1.0
3,580,373	+				+0.1
3,580,391	-				-0.2
3,580,419	+				-1.7
3,580,421	+				+0.4
3,580,429	-				+0.4
3,580,439	+				-0.6
3,580,439	+				-0.1
3,580,439	-				-0.5
3,580,447	-				-1.6
3,580,461	+				+0.2
3,580,469	-				-0.3
3,580,532	+				-1.5
3,580,532	+				+0.0
3,580,549	-				-0.1
3,580,551	+				-0.2
3,580,553	+				+0.9
3,580,556	+				-0.2
3,580,559	-				+0.6
3,580,560	+				+0.6
3,580,561	-				-0.9
3,580,561	-				+0.1
3,580,561	-				-0.2
3,580,573	+				+0.7
3,580,581	-				-2.7
3,580,583	-				+0.5
3,580,586	+				-0.6
3,580,588	+				-1.3
3,580,594	-				-1.6
3,580,636	+				-0.4
3,580,644	-				-1.7
3,580,655	+				+0.1
3,580,655	+				-0.1
3,580,655	+				+1.1
3,580,655	+				+1.1
3,580,663	-				+1.1
3,580,663	-				+0.6
3,580,663	-				-0.1
3,580,663	-				+0.8
3,580,663	-				-0.3
3,580,712	+				-1.5
3,580,734	+				+0.3
3,580,754	-				-0.4
3,580,774	-				+0.7
3,580,791	+				+0.1
3,580,797	+				-0.6
3,580,797	+				-1.7
3,580,797	+				+0.2
3,580,799	-				+1.1
3,580,799	-				-0.9
3,580,799	-				-2.3
3,580,800	-				-0.6
3,580,825	+				-0.1
3,580,833	-				-0.9
3,580,845	-				-0.0
3,580,859	-				+0.1
3,580,863	+				-0.6
3,580,876	+				+0.1
3,580,878	+				-2.2
3,580,884	-				-0.9
3,580,912	+				-0.2
3,580,935	-				+0.1
3,580,935	-				+0.1
3,580,950	-				-0.0
3,580,960	+				+0.6
3,580,998	+				+1.0
3,580,998	+				-1.6
3,580,998	+				+0.8
3,581,001	-				-2.2
3,581,003	+				+0.8
3,581,008	+				-0.1
3,581,008	+				-1.2
3,581,008	+				-1.0
3,581,008	+				+0.1
3,581,008	+				-0.7
3,581,008	+				+0.3
3,581,008	+				+0.5
3,581,008	+				-1.2
3,581,008	+				+0.4
3,581,008	+				-2.1
3,581,008	+				-0.1
3,581,008	+				+0.3
3,581,008	+				-0.2
3,581,016	-				-0.4
3,581,016	-				-1.3
3,581,016	-				+0.1
3,581,016	-				+0.6
3,581,016	-				-0.4
3,581,016	-				-0.7
3,581,016	-				-2.2
3,581,016	-				-1.7
3,581,059	+				-0.4
3,581,059	+				+1.2
3,581,067	-				+0.4
3,581,067	-				+0.5
3,581,077	+				-0.1
3,581,077	+				-1.3
3,581,078	-				-0.5
3,581,078	-				-0.7
3,581,079	+				+0.6
3,581,079	+				-0.2
3,581,079	+				+0.4
3,581,081	+				-0.1
3,581,085	-				+0.5
3,581,087	-				-0.3
3,581,087	-				-0.5
3,581,096	-				-0.5
3,581,101	+				+0.2
3,581,101	+				-0.0
3,581,101	+				-1.8
3,581,101	+				+0.2
3,581,101	+				+0.4
3,581,101	+				-1.2
3,581,103	+				+1.4
3,581,109	-				+0.3
3,581,109	-				-2.1
3,581,109	-				-1.1
3,581,109	-				+1.5
3,581,109	-				+1.0
3,581,109	-				+0.3
3,581,109	-				+0.2
3,581,109	-				+0.2
3,581,109	-				+0.3
3,581,152	+				-1.5
3,581,186	+		GFF3534	0.12	-0.4
3,581,192	+		GFF3534	0.13	-1.2
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-2.6
3,581,192	+		GFF3534	0.13	-3.2
3,581,192	+		GFF3534	0.13	-0.8
3,581,192	+		GFF3534	0.13	-1.8
3,581,192	+		GFF3534	0.13	-2.0
3,581,192	+		GFF3534	0.13	-1.7
3,581,192	+		GFF3534	0.13	-2.0
3,581,192	+		GFF3534	0.13	-1.6
3,581,192	+		GFF3534	0.13	-1.7
3,581,192	+		GFF3534	0.13	-2.3
3,581,192	+		GFF3534	0.13	-3.6
3,581,192	+		GFF3534	0.13	-2.3
3,581,192	+		GFF3534	0.13	-2.7
3,581,192	+		GFF3534	0.13	-1.4
3,581,192	+		GFF3534	0.13	-2.0
3,581,199	-		GFF3534	0.14	-1.9
3,581,199	-		GFF3534	0.14	-1.6
3,581,200	-		GFF3534	0.14	-1.7
3,581,200	-		GFF3534	0.14	-0.5
3,581,200	-		GFF3534	0.14	-2.4
3,581,200	-		GFF3534	0.14	-2.0
3,581,200	-		GFF3534	0.14	-1.8
3,581,200	-		GFF3534	0.14	-2.5
3,581,200	-		GFF3534	0.14	-1.9
3,581,200	-		GFF3534	0.14	-0.6
3,581,200	-		GFF3534	0.14	-3.0
3,581,200	-		GFF3534	0.14	-3.4
3,581,200	-		GFF3534	0.14	-2.5
3,581,221	+		GFF3534	0.17	-0.5
3,581,226	+		GFF3534	0.18	-2.0
3,581,226	+		GFF3534	0.18	-2.8
3,581,226	+		GFF3534	0.18	-2.8
3,581,232	+		GFF3534	0.19	-0.5
3,581,234	-		GFF3534	0.20	-2.4
3,581,234	-		GFF3534	0.20	-1.3
3,581,235	-		GFF3534	0.20	-2.3
3,581,240	-		GFF3534	0.21	-0.4
3,581,246	+		GFF3534	0.22	-1.6
3,581,246	+		GFF3534	0.22	-1.9
3,581,246	+		GFF3534	0.22	-2.6
3,581,246	+		GFF3534	0.22	-2.2
3,581,247	+		GFF3534	0.22	-3.0
3,581,247	+		GFF3534	0.22	-3.4
3,581,253	-		GFF3534	0.23	-2.2
3,581,255	-		GFF3534	0.23	-3.6
3,581,269	-		GFF3534	0.26	-0.1
3,581,281	+		GFF3534	0.28	-1.6
3,581,281	-		GFF3534	0.28	-0.7
3,581,292	-		GFF3534	0.29	-1.2
3,581,302	+		GFF3534	0.31	-1.0
3,581,302	+		GFF3534	0.31	-1.6
3,581,302	+		GFF3534	0.31	-1.7
3,581,302	+		GFF3534	0.31	-0.9
3,581,302	+		GFF3534	0.31	-1.9
3,581,302	+		GFF3534	0.31	-3.1
3,581,310	-		GFF3534	0.32	-0.7
3,581,310	-		GFF3534	0.32	-2.5
3,581,310	-		GFF3534	0.32	-3.2
3,581,310	-		GFF3534	0.32	-2.0
3,581,310	-		GFF3534	0.32	-2.5
3,581,310	-		GFF3534	0.32	-3.0
3,581,310	-		GFF3534	0.32	-0.8
3,581,340	+		GFF3534	0.38	-1.3
3,581,340	+		GFF3534	0.38	-2.4
3,581,350	+		GFF3534	0.39	-1.6
3,581,350	+		GFF3534	0.39	-2.2
3,581,358	-		GFF3534	0.41	-1.2
3,581,399	+		GFF3534	0.48	-2.2
3,581,399	+		GFF3534	0.48	-2.7
3,581,407	-		GFF3534	0.49	-1.2
3,581,420	+		GFF3534	0.51	-2.0
3,581,420	+		GFF3534	0.51	-2.6
3,581,420	+		GFF3534	0.51	-2.8
3,581,428	+		GFF3534	0.52	-2.0
3,581,428	+		GFF3534	0.52	-2.2
3,581,428	-		GFF3534	0.52	-1.2
3,581,428	-		GFF3534	0.52	-2.3
3,581,428	-		GFF3534	0.52	-1.4
3,581,429	-		GFF3534	0.53	-1.5
3,581,449	+		GFF3534	0.56	-1.4
3,581,471	+		GFF3534	0.60	-2.9
3,581,471	+		GFF3534	0.60	-2.5
3,581,472	+		GFF3534	0.60	-2.1
3,581,479	-		GFF3534	0.61	-3.9
3,581,480	-		GFF3534	0.61	-2.1
3,581,501	-		GFF3534	0.65	-2.4
3,581,538	-		GFF3534	0.71	-1.7