Strain Fitness in Sphingobium sp. HT1-2 around GFF3522

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,560,163	+				-1.3
3,560,163	+				-0.3
3,560,168	+				+0.1
3,560,178	+				-0.8
3,560,234	+				+0.3
3,560,234	+				+0.1
3,560,234	+				-0.4
3,560,241	-				-0.1
3,560,241	-				-1.9
3,560,241	-				-2.2
3,560,242	-				-1.7
3,560,306	+				-0.2
3,560,314	-				+0.3
3,560,333	-				-1.4
3,560,353	+				-0.0
3,560,354	+				-1.2
3,560,355	+				-1.8
3,560,360	+				+0.6
3,560,370	+				+0.3
3,560,372	-				-0.3
3,560,372	-				-0.6
3,560,372	-				-1.2
3,560,410	+				+0.8
3,560,413	-				-1.2
3,560,424	+		GFF3521	0.10	-0.5
3,560,434	+		GFF3521	0.12	+0.1
3,560,456	+		GFF3521	0.15	-1.8
3,560,457	+		GFF3521	0.15	-0.4
3,560,457	+		GFF3521	0.15	-0.3
3,560,457	+		GFF3521	0.15	+0.2
3,560,464	-		GFF3521	0.16	-0.2
3,560,464	-		GFF3521	0.16	-0.2
3,560,465	-		GFF3521	0.16	-1.8
3,560,466	+		GFF3521	0.17	-0.1
3,560,466	+		GFF3521	0.17	-1.1
3,560,474	-		GFF3521	0.18	-0.7
3,560,474	-		GFF3521	0.18	-0.0
3,560,474	-		GFF3521	0.18	-2.2
3,560,474	-		GFF3521	0.18	-1.0
3,560,490	+		GFF3521	0.20	-0.1
3,560,490	+		GFF3521	0.20	+0.4
3,560,490	+		GFF3521	0.20	-0.8
3,560,490	+		GFF3521	0.20	-1.1
3,560,490	+		GFF3521	0.20	-1.2
3,560,490	+		GFF3521	0.20	-1.4
3,560,490	+		GFF3521	0.20	-1.2
3,560,490	+		GFF3521	0.20	-0.2
3,560,490	+		GFF3521	0.20	+0.7
3,560,498	-		GFF3521	0.21	-0.8
3,560,498	-		GFF3521	0.21	-0.1
3,560,502	+		GFF3521	0.22	+0.8
3,560,521	+		GFF3521	0.25	-1.8
3,560,521	+		GFF3521	0.25	-1.9
3,560,525	+		GFF3521	0.25	-1.2
3,560,529	-		GFF3521	0.26	-1.5
3,560,533	-		GFF3521	0.27	-0.9
3,560,534	-		GFF3521	0.27	+0.0
3,560,534	-		GFF3521	0.27	-0.7
3,560,539	+		GFF3521	0.28	+0.5
3,560,564	+		GFF3521	0.31	-1.1
3,560,565	-		GFF3521	0.32	-0.7
3,560,565	-		GFF3521	0.32	-0.2
3,560,585	+		GFF3521	0.35	-0.1
3,560,585	+		GFF3521	0.35	-0.7
3,560,593	-		GFF3521	0.36	-0.5
3,560,593	-		GFF3521	0.36	+0.2
3,560,598	+		GFF3521	0.37	-1.7
3,560,606	-		GFF3521	0.38	-0.5
3,560,617	-		GFF3521	0.39	-0.8
3,560,641	+		GFF3521	0.43	-1.6
3,560,642	+		GFF3521	0.43	-0.2
3,560,648	+		GFF3521	0.44	+1.2
3,560,664	+		GFF3521	0.47	-0.2
3,560,695	+		GFF3521	0.51	+0.7
3,560,703	-		GFF3521	0.52	+0.9
3,560,708	+		GFF3521	0.53	+0.3
3,560,716	+		GFF3521	0.54	-1.5
3,560,716	+		GFF3521	0.54	-2.1
3,560,716	+		GFF3521	0.54	-1.0
3,560,716	+		GFF3521	0.54	-1.2
3,560,716	+		GFF3521	0.54	+1.4
3,560,724	-		GFF3521	0.56	-0.7
3,560,724	-		GFF3521	0.56	-0.8
3,560,750	+		GFF3521	0.60	+0.0
3,560,751	-		GFF3521	0.60	+1.5
3,560,751	-		GFF3521	0.60	-0.8
3,560,760	+		GFF3521	0.61	-2.1
3,560,791	+		GFF3521	0.66	+0.1
3,560,791	+		GFF3521	0.66	+0.4
3,560,799	-		GFF3521	0.67	+0.4
3,560,806	+		GFF3521	0.68	+0.8
3,560,833	-		GFF3521	0.72	+1.1
3,560,866	+		GFF3521	0.77	-1.5
3,560,872	+		GFF3521	0.78	-0.1
3,560,896	-		GFF3521	0.82	-0.1
3,560,902	+		GFF3521	0.83	-0.4
3,560,916	-		GFF3521	0.85	+0.4
3,560,921	-		GFF3521	0.85	-0.1
3,560,927	+		GFF3521	0.86	-0.2
3,560,931	-		GFF3521	0.87	+0.2
3,560,939	-		GFF3521	0.88	+1.0
3,560,948	+		GFF3521	0.90	-0.1
3,560,949	+		GFF3521	0.90	+0.7
3,560,949	+		GFF3521	0.90	-0.2
3,560,949	+		GFF3521	0.90	+0.4
3,560,955	-				-0.5
3,560,957	-				+1.3
3,560,957	-				+1.1
3,560,957	-				+1.6
3,560,975	-				+0.8
3,560,977	+				-0.8
3,561,004	+				-0.1
3,561,032	-				+0.5
3,561,056	+				+0.0
3,561,062	+				-0.5
3,561,062	+				-1.1
3,561,064	-				-0.9
3,561,083	-				-0.7
3,561,089	-				-0.2
3,561,091	+				-1.6
3,561,099	-				-0.5
3,561,099	-				-1.8
3,561,099	-				-0.0
3,561,107	-				-0.5
3,561,110	+				+1.1
3,561,110	+				-2.3
3,561,110	+				+0.1
3,561,110	+				+0.4
3,561,117	-				-0.6
3,561,120	+				-0.1
3,561,120	+				-0.3
3,561,128	-				-0.0
3,561,139	+				+0.4
3,561,139	+				+0.5
3,561,139	+				-0.6
3,561,139	+				+0.3
3,561,139	+				+1.2
3,561,139	+				+0.8
3,561,139	+				+0.2
3,561,140	+				-1.8
3,561,147	-				-2.0
3,561,147	-				-0.5
3,561,147	-				+1.5
3,561,147	-				-0.5
3,561,147	-				-0.2
3,561,147	-				+0.1
3,561,147	-				+0.4
3,561,147	-				-0.8
3,561,147	-				+0.6
3,561,169	-				-0.8
3,561,171	-				-1.0
3,561,187	+				-0.5
3,561,196	+				-0.5
3,561,196	+				+0.5
3,561,196	+				+0.3
3,561,196	+				+0.0
3,561,204	-				-1.1
3,561,228	-				-0.5
3,561,230	-				-0.7
3,561,252	+				-0.2
3,561,262	-				+0.5
3,561,275	+				-0.4
3,561,280	+				+0.3
3,561,281	-				+0.5
3,561,281	-				-2.5
3,561,282	+				-0.4
3,561,282	+				+0.6
3,561,282	+				-0.0
3,561,288	-				-0.8
3,561,288	-				-0.4
3,561,290	-				+0.6
3,561,292	-				-0.7
3,561,293	-				-0.6
3,561,302	-				-1.2
3,561,315	+				-0.6
3,561,315	+				-1.0
3,561,316	+				+0.8
3,561,325	+				+0.1
3,561,325	+				-0.5
3,561,333	-				-0.6
3,561,333	-				+0.9
3,561,333	-				-1.1
3,561,334	-				-1.1
3,561,335	+				-2.1
3,561,338	-				+0.8
3,561,340	+				-1.5
3,561,349	+				+0.2
3,561,349	+				-1.3
3,561,349	+				+1.0
3,561,349	-				-0.8
3,561,357	-				-0.1
3,561,357	-				+0.6
3,561,357	-				+0.1
3,561,357	-				-1.2
3,561,357	-				-0.2
3,561,375	+		GFF3522	0.10	+0.3
3,561,377	+		GFF3522	0.10	+1.6
3,561,377	+		GFF3522	0.10	-1.0
3,561,388	+		GFF3522	0.11	-0.5
3,561,404	-		GFF3522	0.12	-0.3
3,561,426	-		GFF3522	0.13	+0.2
3,561,462	-		GFF3522	0.14	+0.4
3,561,486	-		GFF3522	0.15	-0.3
3,561,486	-		GFF3522	0.15	+0.2
3,561,514	+		GFF3522	0.17	-0.4
3,561,514	+		GFF3522	0.17	-0.2
3,561,514	+		GFF3522	0.17	-0.3
3,561,514	+		GFF3522	0.17	-0.0
3,561,517	-		GFF3522	0.17	-1.2
3,561,522	+		GFF3522	0.17	-0.4
3,561,522	+		GFF3522	0.17	+0.4
3,561,522	+		GFF3522	0.17	+0.3
3,561,522	-		GFF3522	0.17	-2.4
3,561,530	-		GFF3522	0.17	-1.0
3,561,535	-		GFF3522	0.18	+0.2
3,561,535	-		GFF3522	0.18	+1.0
3,561,540	-		GFF3522	0.18	-0.4
3,561,547	+		GFF3522	0.18	-0.3
3,561,548	+		GFF3522	0.18	+0.5
3,561,549	-		GFF3522	0.18	-1.9
3,561,555	-		GFF3522	0.19	-0.2
3,561,571	+		GFF3522	0.19	-0.5
3,561,571	+		GFF3522	0.19	-0.9
3,561,571	+		GFF3522	0.19	-0.2
3,561,571	+		GFF3522	0.19	+1.0
3,561,571	+		GFF3522	0.19	-1.0
3,561,571	+		GFF3522	0.19	+0.6
3,561,573	+		GFF3522	0.20	+0.5
3,561,578	+		GFF3522	0.20	+0.1
3,561,579	-		GFF3522	0.20	+0.4
3,561,579	-		GFF3522	0.20	+0.7
3,561,579	-		GFF3522	0.20	+1.1
3,561,581	-		GFF3522	0.20	+1.1
3,561,581	-		GFF3522	0.20	-0.5
3,561,583	+		GFF3522	0.20	-0.6
3,561,601	+		GFF3522	0.21	+0.4
3,561,603	-		GFF3522	0.21	-1.9
3,561,622	-		GFF3522	0.22	-2.6
3,561,647	+		GFF3522	0.23	-2.0
3,561,651	-		GFF3522	0.23	+0.3
3,561,652	+		GFF3522	0.23	+0.1
3,561,660	+		GFF3522	0.24	-1.5
3,561,660	+		GFF3522	0.24	+1.1
3,561,660	+		GFF3522	0.24	+0.4
3,561,660	+		GFF3522	0.24	+0.6
3,561,668	-		GFF3522	0.24	+0.7
3,561,676	+		GFF3522	0.24	+1.0
3,561,676	+		GFF3522	0.24	-1.6
3,561,676	+		GFF3522	0.24	+0.7
3,561,676	+		GFF3522	0.24	-0.1
3,561,684	-		GFF3522	0.25	-0.1
3,561,684	-		GFF3522	0.25	-1.2
3,561,684	-		GFF3522	0.25	-0.9
3,561,702	-		GFF3522	0.26	-0.5
3,561,762	+		GFF3522	0.28	+1.1
3,561,762	+		GFF3522	0.28	+0.0
3,561,772	+		GFF3522	0.29	+1.4
3,561,772	+		GFF3522	0.29	-0.4
3,561,772	+		GFF3522	0.29	+1.1
3,561,772	+		GFF3522	0.29	+0.1
3,561,772	+		GFF3522	0.29	-0.2
3,561,772	-		GFF3522	0.29	-0.4
3,561,772	-		GFF3522	0.29	-1.2
3,561,780	-		GFF3522	0.29	-0.2
3,561,780	-		GFF3522	0.29	-1.2
3,561,788	+		GFF3522	0.30	-1.2
3,561,802	-		GFF3522	0.30	-1.8
3,561,820	+		GFF3522	0.31	-1.4
3,561,820	+		GFF3522	0.31	-2.3
3,561,820	+		GFF3522	0.31	+0.5
3,561,828	-		GFF3522	0.31	+0.4
3,561,828	-		GFF3522	0.31	-0.8
3,561,828	-		GFF3522	0.31	-1.0
3,561,828	-		GFF3522	0.31	+0.7
3,561,858	+		GFF3522	0.33	+0.8
3,561,866	-		GFF3522	0.33	+0.3
3,561,902	+		GFF3522	0.35	+1.0
3,561,939	-		GFF3522	0.37	-0.3
3,561,939	-		GFF3522	0.37	-0.9
3,561,947	-		GFF3522	0.37	-0.1
3,561,959	-		GFF3522	0.38	+0.3
3,561,970	-		GFF3522	0.38	-1.1
3,561,980	+		GFF3522	0.39	-0.4
3,561,988	+		GFF3522	0.39	-0.5
3,561,988	+		GFF3522	0.39	-1.0
3,561,988	+		GFF3522	0.39	-0.1
3,561,988	-		GFF3522	0.39	+0.3
3,561,988	-		GFF3522	0.39	+0.3
3,561,988	-		GFF3522	0.39	-0.6
3,561,988	-		GFF3522	0.39	-0.7
3,561,990	+		GFF3522	0.39	-2.1
3,561,996	-		GFF3522	0.39	+0.1
3,561,996	-		GFF3522	0.39	-2.0
3,561,996	-		GFF3522	0.39	+1.1
3,561,996	-		GFF3522	0.39	-0.3
3,561,996	-		GFF3522	0.39	-1.1
3,562,003	-		GFF3522	0.40	-1.7
3,562,030	-		GFF3522	0.41	-0.8
3,562,042	-		GFF3522	0.42	+0.2
3,562,050	+		GFF3522	0.42	+0.7
3,562,076	+		GFF3522	0.43	-2.0
3,562,113	+		GFF3522	0.45	-1.0
3,562,123	+		GFF3522	0.45	-0.2
3,562,123	+		GFF3522	0.45	-1.5
3,562,131	-		GFF3522	0.46	-0.8
3,562,131	-		GFF3522	0.46	-0.8
3,562,136	+		GFF3522	0.46	+1.5
3,562,136	+		GFF3522	0.46	+0.2
3,562,145	-		GFF3522	0.46	-0.1
3,562,155	+		GFF3522	0.47	-0.7
3,562,155	+		GFF3522	0.47	+0.0
3,562,176	+		GFF3522	0.48	-0.7
3,562,181	+		GFF3522	0.48	-0.4
3,562,184	-		GFF3522	0.48	-0.6
3,562,184	-		GFF3522	0.48	-0.2
3,562,184	-		GFF3522	0.48	-0.1
3,562,184	-		GFF3522	0.48	-1.6
3,562,184	-		GFF3522	0.48	-0.4
3,562,189	-		GFF3522	0.48	-1.2
3,562,234	+		GFF3522	0.51	+0.8
3,562,234	+		GFF3522	0.51	+0.1
3,562,234	+		GFF3522	0.51	-0.2
3,562,234	+		GFF3522	0.51	-2.4
3,562,234	+		GFF3522	0.51	-1.5
3,562,234	+		GFF3522	0.51	-0.9
3,562,234	+		GFF3522	0.51	+0.3
3,562,234	+		GFF3522	0.51	-0.6
3,562,240	-		GFF3522	0.51	-0.2
3,562,242	+		GFF3522	0.51	-0.7
3,562,242	-		GFF3522	0.51	-0.4
3,562,242	-		GFF3522	0.51	-0.5
3,562,242	-		GFF3522	0.51	-0.3
3,562,242	-		GFF3522	0.51	+0.2
3,562,242	-		GFF3522	0.51	-0.0
3,562,242	-		GFF3522	0.51	-0.3
3,562,242	-		GFF3522	0.51	-1.5
3,562,242	-		GFF3522	0.51	-0.4
3,562,251	-		GFF3522	0.51	-0.4
3,562,253	+		GFF3522	0.51	+0.6
3,562,253	+		GFF3522	0.51	+0.0
3,562,253	+		GFF3522	0.51	-0.4
3,562,258	+		GFF3522	0.52	+1.1
3,562,261	-		GFF3522	0.52	-0.5
3,562,261	-		GFF3522	0.52	-0.2
3,562,261	-		GFF3522	0.52	+0.2
3,562,261	-		GFF3522	0.52	+0.5
3,562,261	-		GFF3522	0.52	-0.0
3,562,261	-		GFF3522	0.52	-0.6
3,562,261	-		GFF3522	0.52	+0.6
3,562,261	-		GFF3522	0.52	-0.1
3,562,266	-		GFF3522	0.52	-0.9
3,562,283	-		GFF3522	0.53	+0.8
3,562,285	-		GFF3522	0.53	+0.2
3,562,311	+		GFF3522	0.54	-0.6
3,562,316	+		GFF3522	0.54	-0.4
3,562,316	+		GFF3522	0.54	-2.0
3,562,316	+		GFF3522	0.54	-0.6
3,562,316	+		GFF3522	0.54	-0.5
3,562,316	+		GFF3522	0.54	+1.4
3,562,316	+		GFF3522	0.54	-0.4
3,562,316	+		GFF3522	0.54	-0.6
3,562,316	+		GFF3522	0.54	+0.4
3,562,316	+		GFF3522	0.54	-0.5
3,562,321	+		GFF3522	0.55	-2.0
3,562,321	+		GFF3522	0.55	+0.6
3,562,321	+		GFF3522	0.55	-0.3
3,562,321	+		GFF3522	0.55	-1.6
3,562,321	+		GFF3522	0.55	+0.3
3,562,321	+		GFF3522	0.55	-0.6
3,562,321	+		GFF3522	0.55	-0.4
3,562,321	+		GFF3522	0.55	+0.6
3,562,324	-		GFF3522	0.55	-0.5
3,562,324	-		GFF3522	0.55	+1.7
3,562,324	-		GFF3522	0.55	+1.1
3,562,324	-		GFF3522	0.55	-0.8
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