Strain Fitness in Sphingobium sp. HT1-2 around GFF3448

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,486,603	-		GFF3446	0.83	-0.8
3,486,627	-				-0.2
3,486,642	-				-1.0
3,486,647	-				+0.2
3,486,648	-				+0.8
3,486,648	-				-0.9
3,486,648	-				+1.2
3,486,663	-				-1.1
3,486,668	+				-1.3
3,486,668	+				-0.6
3,486,668	+				-3.1
3,486,668	+				+0.1
3,486,670	+				+0.8
3,486,670	+				+0.5
3,486,675	+				-0.1
3,486,676	-				-0.2
3,486,676	-				-1.7
3,486,678	-				-0.8
3,486,678	-				-1.3
3,486,678	-				+0.9
3,486,681	-				-2.1
3,486,681	-				+0.5
3,486,681	-				-0.0
3,486,686	-				+0.5
3,486,689	+				-0.2
3,486,697	-				-1.0
3,486,718	+				-2.4
3,486,718	-				+0.7
3,486,723	+		GFF3447	0.10	+0.4
3,486,726	-		GFF3447	0.11	-0.3
3,486,728	+		GFF3447	0.11	-1.1
3,486,736	-		GFF3447	0.12	-1.2
3,486,736	-		GFF3447	0.12	+0.9
3,486,738	-		GFF3447	0.12	+0.5
3,486,790	+		GFF3447	0.18	-1.6
3,486,790	+		GFF3447	0.18	+0.2
3,486,795	+		GFF3447	0.19	-2.2
3,486,798	-		GFF3447	0.19	+0.0
3,486,798	-		GFF3447	0.19	+0.2
3,486,839	+		GFF3447	0.24	-0.5
3,486,839	+		GFF3447	0.24	-0.5
3,486,855	-		GFF3447	0.26	-0.3
3,486,857	+		GFF3447	0.26	+0.1
3,486,858	-		GFF3447	0.26	+0.9
3,486,930	+		GFF3447	0.35	-0.2
3,486,938	-		GFF3447	0.36	-0.5
3,486,953	+		GFF3447	0.37	+0.1
3,486,963	+		GFF3447	0.39	+0.1
3,486,963	+		GFF3447	0.39	-0.8
3,486,963	+		GFF3447	0.39	+0.0
3,486,963	+		GFF3447	0.39	+0.7
3,486,963	+		GFF3447	0.39	-0.7
3,486,966	-		GFF3447	0.39	+0.4
3,486,971	-		GFF3447	0.39	+0.9
3,486,971	-		GFF3447	0.39	-0.1
3,486,973	+		GFF3447	0.40	-0.4
3,486,973	+		GFF3447	0.40	-0.5
3,486,973	+		GFF3447	0.40	-1.2
3,486,976	-		GFF3447	0.40	-0.5
3,486,981	-		GFF3447	0.41	+0.2
3,487,007	+		GFF3447	0.44	+1.6
3,487,033	+		GFF3447	0.47	-0.5
3,487,033	+		GFF3447	0.47	+0.5
3,487,033	+		GFF3447	0.47	+0.2
3,487,033	+		GFF3447	0.47	-0.5
3,487,033	+		GFF3447	0.47	-0.2
3,487,033	+		GFF3447	0.47	-0.7
3,487,033	+		GFF3447	0.47	-0.1
3,487,041	-		GFF3447	0.48	+0.7
3,487,041	-		GFF3447	0.48	-3.1
3,487,043	+		GFF3447	0.48	-0.8
3,487,043	+		GFF3447	0.48	-0.8
3,487,043	+		GFF3447	0.48	-0.5
3,487,043	+		GFF3447	0.48	-0.8
3,487,043	+		GFF3447	0.48	+1.1
3,487,051	-		GFF3447	0.49	+0.6
3,487,051	-		GFF3447	0.49	-0.2
3,487,051	-		GFF3447	0.49	+0.0
3,487,061	-		GFF3447	0.50	-1.8
3,487,076	-		GFF3447	0.52	-0.1
3,487,076	-		GFF3447	0.52	-0.3
3,487,076	-		GFF3447	0.52	-0.3
3,487,083	+		GFF3447	0.53	-1.5
3,487,086	-		GFF3447	0.53	+0.6
3,487,113	-		GFF3447	0.56	-1.2
3,487,121	+		GFF3447	0.57	-0.8
3,487,129	-		GFF3447	0.58	-0.7
3,487,129	-		GFF3447	0.58	+0.6
3,487,143	+		GFF3447	0.60	-0.0
3,487,152	-		GFF3447	0.61	+0.3
3,487,158	+		GFF3447	0.61	+0.0
3,487,166	-		GFF3447	0.62	-1.3
3,487,230	-		GFF3447	0.70	+0.0
3,487,248	+		GFF3447	0.72	+1.0
3,487,250	-		GFF3447	0.72	-0.5
3,487,267	+		GFF3447	0.74	-0.6
3,487,267	+		GFF3447	0.74	-0.1
3,487,267	+		GFF3447	0.74	+1.3
3,487,275	-		GFF3447	0.75	+0.1
3,487,275	-		GFF3447	0.75	-0.7
3,487,284	+		GFF3447	0.76	-0.4
3,487,312	+		GFF3447	0.80	-0.4
3,487,324	-		GFF3447	0.81	-1.4
3,487,333	+		GFF3447	0.82	+0.2
3,487,338	+		GFF3447	0.83	-0.1
3,487,341	-		GFF3447	0.83	+1.8
3,487,341	-		GFF3447	0.83	-0.2
3,487,341	-		GFF3447	0.83	+0.3
3,487,341	-		GFF3447	0.83	-1.3
3,487,341	-		GFF3447	0.83	+0.4
3,487,341	-		GFF3447	0.83	-2.0
3,487,359	+		GFF3447	0.85	-0.2
3,487,366	+		GFF3447	0.86	-0.2
3,487,367	+		GFF3447	0.86	-0.2
3,487,367	+		GFF3447	0.86	+0.1
3,487,367	+		GFF3447	0.86	-0.1
3,487,367	-		GFF3447	0.86	+1.1
3,487,396	-		GFF3447	0.90	-0.8
3,487,396	-		GFF3447	0.90	+0.4
3,487,429	-				-1.1
3,487,444	+				+0.6
3,487,444	+				-0.9
3,487,452	-				-0.8
3,487,465	+				-0.5
3,487,483	-				-0.4
3,487,516	+				-1.8
3,487,516	+				-0.5
3,487,534	-				-2.3
3,487,536	+				-2.0
3,487,536	+				-1.5
3,487,536	+				+0.0
3,487,544	-				-0.1
3,487,544	-				-0.0
3,487,544	-				+0.3
3,487,560	+				+0.1
3,487,570	+				-0.4
3,488,378	-				-0.4
3,488,378	-				+0.1
3,488,378	-				-0.5
3,488,390	+				+0.8
3,488,406	-				-0.2
3,488,446	+				-0.6
3,488,461	+		GFF3449	0.10	+0.4
3,488,469	+		GFF3449	0.11	-0.1
3,488,469	+		GFF3449	0.11	-0.6
3,488,469	+		GFF3449	0.11	-1.7
3,488,469	+		GFF3449	0.11	-2.8
3,488,477	-		GFF3449	0.12	+0.5
3,488,477	-		GFF3449	0.12	-1.3
3,488,477	-		GFF3449	0.12	-1.7
3,488,477	-		GFF3449	0.12	-1.7
3,488,481	+		GFF3449	0.12	+0.3
3,488,481	+		GFF3449	0.12	+1.1
3,488,489	-		GFF3449	0.13	+0.2
3,488,489	-		GFF3449	0.13	-0.5
3,488,511	+		GFF3449	0.15	-0.1
3,488,535	-		GFF3449	0.17	-1.8
3,488,551	+		GFF3449	0.18	-0.7
3,488,556	+		GFF3449	0.18	+1.0
3,488,583	+		GFF3449	0.21	-0.1
3,488,586	-		GFF3449	0.21	+0.1
3,488,591	-		GFF3449	0.21	-0.2
3,488,658	-		GFF3449	0.27	-0.5
3,488,670	+		GFF3449	0.28	-1.8
3,488,673	+		GFF3449	0.28	+0.1
3,488,673	+		GFF3449	0.28	-0.3
3,488,673	+		GFF3449	0.28	-2.3
3,488,673	+		GFF3449	0.28	-0.2
3,488,673	+		GFF3449	0.28	-1.3
3,488,673	+		GFF3449	0.28	+1.7
3,488,673	+		GFF3449	0.28	+0.0
3,488,674	+		GFF3449	0.28	-0.8
3,488,681	-		GFF3449	0.29	-3.0
3,488,681	-		GFF3449	0.29	-0.8
3,488,681	-		GFF3449	0.29	-0.4
3,488,716	+		GFF3449	0.32	-0.5
3,488,716	+		GFF3449	0.32	-0.4
3,488,716	+		GFF3449	0.32	-1.0
3,488,716	+		GFF3449	0.32	-0.9
3,488,716	+		GFF3449	0.32	+0.6
3,488,724	-		GFF3449	0.33	+1.1
3,488,724	-		GFF3449	0.33	-0.1
3,488,724	-		GFF3449	0.33	+0.2
3,488,728	-		GFF3449	0.33	-1.0
3,488,740	+		GFF3449	0.34	-0.1
3,488,775	-		GFF3449	0.37	-1.6
3,488,791	+		GFF3449	0.38	+0.2
3,488,791	+		GFF3449	0.38	+0.7
3,488,792	-		GFF3449	0.38	-1.0
3,488,793	+		GFF3449	0.39	-2.0
3,488,799	-		GFF3449	0.39	-0.2
3,488,800	+		GFF3449	0.39	-1.6
3,488,808	-		GFF3449	0.40	-0.6
3,488,808	-		GFF3449	0.40	+0.7
3,488,808	-		GFF3449	0.40	-0.3
3,488,808	-		GFF3449	0.40	-1.5
3,488,819	-		GFF3449	0.41	-1.5
3,488,847	+		GFF3449	0.43	+0.1
3,488,847	+		GFF3449	0.43	-0.5
3,488,847	+		GFF3449	0.43	-2.9
3,488,847	+		GFF3449	0.43	+0.6
3,488,847	+		GFF3449	0.43	+1.0
3,488,847	+		GFF3449	0.43	-0.0
3,488,847	+		GFF3449	0.43	-2.3
3,488,855	-		GFF3449	0.44	-1.6
3,488,855	-		GFF3449	0.44	-0.4
3,488,855	-		GFF3449	0.44	-0.5
3,488,855	-		GFF3449	0.44	-0.5
3,488,857	-		GFF3449	0.44	+1.2
3,488,865	-		GFF3449	0.45	-1.5
3,488,872	-		GFF3449	0.45	+0.5
3,488,874	-		GFF3449	0.45	-0.8
3,488,890	+		GFF3449	0.47	-0.9
3,488,890	+		GFF3449	0.47	-0.7
3,488,890	+		GFF3449	0.47	-0.8
3,488,890	+		GFF3449	0.47	-0.2
3,488,890	+		GFF3449	0.47	+1.0
3,488,898	-		GFF3449	0.47	-0.1
3,488,898	-		GFF3449	0.47	+1.0
3,488,898	-		GFF3449	0.47	-0.9
3,488,898	-		GFF3449	0.47	-1.3
3,488,945	-		GFF3449	0.51	+1.0
3,488,945	-		GFF3449	0.51	+0.1
3,488,946	+		GFF3449	0.51	-0.5
3,488,954	-		GFF3449	0.52	-0.6
3,488,969	-		GFF3449	0.53	+0.0
3,488,974	-		GFF3449	0.54	-1.0
3,488,985	+		GFF3449	0.55	-1.4
3,489,040	+		GFF3449	0.59	-0.4
3,489,040	+		GFF3449	0.59	+0.1
3,489,055	-		GFF3449	0.61	-1.2
3,489,055	-		GFF3449	0.61	-2.4
3,489,064	+		GFF3449	0.61	+0.0
3,489,064	+		GFF3449	0.61	-3.0
3,489,064	+		GFF3449	0.61	-1.2
3,489,064	+		GFF3449	0.61	-0.6
3,489,064	+		GFF3449	0.61	-0.5
3,489,064	+		GFF3449	0.61	+0.8
3,489,064	+		GFF3449	0.61	-1.6
3,489,067	-		GFF3449	0.62	-1.3
3,489,072	-		GFF3449	0.62	-0.1
3,489,072	-		GFF3449	0.62	-0.4
3,489,072	-		GFF3449	0.62	-1.7
3,489,072	-		GFF3449	0.62	+1.7
3,489,072	-		GFF3449	0.62	+0.1
3,489,072	-		GFF3449	0.62	+0.4
3,489,072	-		GFF3449	0.62	+0.4
3,489,084	-		GFF3449	0.63	-0.5
3,489,084	-		GFF3449	0.63	-0.6
3,489,084	-		GFF3449	0.63	+0.2
3,489,084	-		GFF3449	0.63	-0.2
3,489,098	+		GFF3449	0.64	-1.9
3,489,105	+		GFF3449	0.65	-0.4
3,489,109	-		GFF3449	0.65	-1.0
3,489,114	-		GFF3449	0.66	-0.7
3,489,146	+		GFF3449	0.68	-2.3
3,489,156	+		GFF3449	0.69	+0.1
3,489,194	-		GFF3449	0.73	+0.8
3,489,205	+		GFF3449	0.73	-2.3
3,489,205	+		GFF3449	0.73	+0.7
3,489,205	+		GFF3449	0.73	+0.3
3,489,205	+		GFF3449	0.73	+0.8
3,489,205	+		GFF3449	0.73	-1.4
3,489,205	+		GFF3449	0.73	-2.3
3,489,205	+		GFF3449	0.73	-1.4
3,489,205	+		GFF3449	0.73	-1.1
3,489,205	+		GFF3449	0.73	-0.9
3,489,205	+		GFF3449	0.73	-0.7
3,489,205	+		GFF3449	0.73	-1.4
3,489,205	+		GFF3449	0.73	-2.5
3,489,205	+		GFF3449	0.73	-0.3
3,489,205	+		GFF3449	0.73	-0.4
3,489,208	-		GFF3449	0.74	-0.3
3,489,213	-		GFF3449	0.74	+0.5
3,489,213	-		GFF3449	0.74	+0.1
3,489,213	-		GFF3449	0.74	-0.7
3,489,213	-		GFF3449	0.74	-2.0
3,489,213	-		GFF3449	0.74	-0.7
3,489,213	-		GFF3449	0.74	-3.0
3,489,213	-		GFF3449	0.74	+1.1
3,489,213	-		GFF3449	0.74	+0.5
3,489,213	-		GFF3449	0.74	-1.4
3,489,213	-		GFF3449	0.74	-1.5
3,489,213	-		GFF3449	0.74	-0.2
3,489,213	-		GFF3449	0.74	+0.3
3,489,213	-		GFF3449	0.74	-0.3
3,489,224	+		GFF3449	0.75	-1.2
3,489,238	+		GFF3449	0.76	-1.6
3,489,238	+		GFF3449	0.76	-1.8
3,489,238	+		GFF3449	0.76	-0.2
3,489,238	+		GFF3449	0.76	+0.0
3,489,243	+		GFF3449	0.77	+0.7
3,489,243	+		GFF3449	0.77	-1.2
3,489,243	+		GFF3449	0.77	-0.0
3,489,243	+		GFF3449	0.77	-1.3
3,489,246	-		GFF3449	0.77	-1.2
3,489,248	+		GFF3449	0.77	-0.5
3,489,251	-		GFF3449	0.77	-1.7
3,489,251	-		GFF3449	0.77	+0.3
3,489,251	-		GFF3449	0.77	+0.4
3,489,251	-		GFF3449	0.77	-0.2
3,489,251	-		GFF3449	0.77	-0.2
3,489,251	-		GFF3449	0.77	-0.1
3,489,256	-		GFF3449	0.78	-0.1
3,489,266	+		GFF3449	0.79	-0.8