Strain Fitness in Sphingobium sp. HT1-2 around GFF3429

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,468,473	-		GFF3427	0.33	-0.2
3,468,486	+		GFF3427	0.34	-1.4
3,468,494	+		GFF3427	0.35	-1.0
3,468,494	+		GFF3427	0.35	-0.3
3,468,494	+		GFF3427	0.35	+0.9
3,468,496	+		GFF3427	0.35	-0.9
3,468,501	+		GFF3427	0.36	-0.6
3,468,510	+		GFF3427	0.37	-0.8
3,468,519	+		GFF3427	0.38	-0.2
3,468,536	+		GFF3427	0.39	+1.7
3,468,537	+		GFF3427	0.40	-0.3
3,468,543	-		GFF3427	0.40	+1.1
3,468,544	-		GFF3427	0.40	-1.6
3,468,564	+		GFF3427	0.42	+0.4
3,468,572	-		GFF3427	0.43	-0.5
3,468,574	+		GFF3427	0.44	+0.0
3,468,582	-		GFF3427	0.44	-0.0
3,468,588	+		GFF3427	0.45	+1.1
3,468,592	-		GFF3427	0.45	+2.0
3,468,593	+		GFF3427	0.46	-0.2
3,468,596	+		GFF3427	0.46	-0.7
3,468,604	-		GFF3427	0.47	-0.1
3,468,618	-		GFF3427	0.48	+1.0
3,468,618	-		GFF3427	0.48	+0.1
3,468,633	-		GFF3427	0.50	-1.0
3,468,637	+		GFF3427	0.50	-1.3
3,468,640	-		GFF3427	0.51	-0.4
3,468,645	-		GFF3427	0.51	-0.0
3,468,667	+		GFF3427	0.54	+1.5
3,468,667	+		GFF3427	0.54	-2.2
3,468,677	-		GFF3427	0.55	-0.0
3,468,686	-		GFF3427	0.56	-2.7
3,468,693	+		GFF3427	0.56	+0.5
3,468,693	+		GFF3427	0.56	+0.5
3,468,695	+		GFF3427	0.57	-0.7
3,468,714	+		GFF3427	0.59	+0.1
3,468,719	+		GFF3427	0.59	-1.4
3,468,722	-		GFF3427	0.60	-0.1
3,468,774	+		GFF3427	0.65	-0.3
3,468,774	+		GFF3427	0.65	-0.3
3,468,774	+		GFF3427	0.65	-0.9
3,468,774	+		GFF3427	0.65	-1.7
3,468,782	-		GFF3427	0.66	+0.5
3,468,782	-		GFF3427	0.66	+0.7
3,468,782	-		GFF3427	0.66	-1.0
3,468,782	-		GFF3427	0.66	-0.0
3,468,782	-		GFF3427	0.66	-0.4
3,468,793	+		GFF3427	0.67	-0.5
3,468,802	+		GFF3427	0.68	-1.4
3,468,810	-		GFF3427	0.69	+0.0
3,468,810	-		GFF3427	0.69	-0.4
3,468,810	-		GFF3427	0.69	+0.3
3,468,815	-		GFF3427	0.70	+0.3
3,468,817	-		GFF3427	0.70	-1.0
3,468,836	-		GFF3427	0.72	-0.3
3,468,843	+		GFF3427	0.73	+0.1
3,468,846	-		GFF3427	0.73	-0.6
3,468,875	+		GFF3427	0.76	+0.3
3,468,875	+		GFF3427	0.76	-0.0
3,468,875	+		GFF3427	0.76	+0.7
3,468,883	-		GFF3427	0.77	-1.8
3,468,883	-		GFF3427	0.77	-1.2
3,468,883	-		GFF3427	0.77	+0.3
3,468,893	+		GFF3427	0.78	-1.0
3,468,909	-		GFF3427	0.80	-0.3
3,468,911	-		GFF3427	0.80	+0.5
3,468,911	-		GFF3427	0.80	+0.1
3,468,913	+		GFF3427	0.80	-1.5
3,468,913	+		GFF3427	0.80	-0.4
3,468,913	+		GFF3427	0.80	-1.5
3,468,913	+		GFF3427	0.80	+0.4
3,468,918	+		GFF3427	0.81	-0.8
3,468,921	-		GFF3427	0.81	+1.3
3,468,921	-		GFF3427	0.81	-0.9
3,468,921	-		GFF3427	0.81	-0.2
3,468,933	+		GFF3427	0.83	-1.2
3,468,943	+		GFF3427	0.84	+0.4
3,468,943	+		GFF3427	0.84	+0.6
3,468,951	-		GFF3427	0.84	-0.5
3,468,951	-		GFF3427	0.84	+0.3
3,468,999	-		GFF3427	0.90	-0.3
3,469,011	-				+0.6
3,469,049	+				-0.5
3,469,050	+				-0.6
3,469,058	-				-0.8
3,469,058	-				+0.9
3,469,058	-				-0.3
3,469,060	+				-1.6
3,469,070	+				-0.4
3,469,114	-				+0.7
3,469,116	+				-1.0
3,469,116	+				-1.2
3,469,124	-				+1.9
3,469,134	-				+0.5
3,469,138	-				-2.6
3,469,143	+				+0.8
3,469,151	-				-0.4
3,469,166	+				+0.7
3,469,166	+				-1.7
3,469,177	-				-0.4
3,469,217	+				-0.8
3,469,225	-				-1.0
3,469,256	-		GFF3428	0.18	-1.6
3,469,256	-		GFF3428	0.18	+0.7
3,469,270	-		GFF3428	0.26	+0.1
3,469,291	-		GFF3428	0.39	-2.4
3,469,336	+		GFF3428	0.65	-2.0
3,469,363	-		GFF3428	0.81	-2.4
3,469,380	+				-1.8
3,469,409	+				-0.3
3,469,409	+				+0.3
3,469,417	-				-1.0
3,469,422	-				+1.1
3,469,447	+				-1.1
3,469,447	+				-1.0
3,469,447	+				+0.7
3,469,447	+				+0.2
3,469,447	+				+0.9
3,469,447	+				+0.0
3,469,447	+				-1.4
3,469,447	+				+1.0
3,469,447	+				-0.6
3,469,447	+				+0.6
3,469,447	+				-1.5
3,469,447	+				-1.4
3,469,447	+				-1.9
3,469,447	+				-0.8
3,469,447	+				+0.6
3,469,447	+				-0.6
3,469,447	+				-0.0
3,469,447	+				-0.1
3,469,447	+				+0.5
3,469,447	+				+0.9
3,469,447	+				+0.8
3,469,447	+				+0.4
3,469,447	+				-2.0
3,469,447	+				-1.5
3,469,447	+				+1.0
3,469,447	+				-0.0
3,469,447	+				+0.2
3,469,447	+				+0.2
3,469,447	+				-0.1
3,469,447	+				+0.9
3,469,447	+				-0.0
3,469,447	+				-2.1
3,469,447	+				-0.0
3,469,447	+				-1.7
3,469,447	+				+0.9
3,469,447	+				-1.4
3,469,447	+				+0.9
3,469,447	+				+0.6
3,469,447	+				+1.4
3,469,447	+				-0.5
3,469,447	+				+0.2
3,469,447	+				+0.7
3,469,447	+				-1.0
3,469,447	+				-1.6
3,469,447	+				-0.4
3,469,447	+				-0.5
3,469,447	+				-1.0
3,469,447	+				-0.2
3,469,447	+				+0.1
3,469,447	+				-1.4
3,469,447	+				-1.5
3,469,447	+				-1.7
3,469,447	+				-1.6
3,469,447	+				+0.1
3,469,447	+				-1.6
3,469,447	+				-0.4
3,469,447	+				-0.8
3,469,447	+				-1.0
3,469,447	+				+0.5
3,469,447	+				+0.3
3,469,447	+				-0.4
3,469,447	+				-0.7
3,469,447	+				-0.9
3,469,447	+				-0.2
3,469,447	+				-0.5
3,469,455	-				-0.1
3,469,455	-				+0.6
3,469,455	-				+0.5
3,469,455	-				-1.5
3,469,455	-				-0.4
3,469,455	-				-0.1
3,469,455	-				+0.3
3,469,455	-				-0.1
3,469,455	-				-1.3
3,469,455	-				-0.3
3,469,455	-				+1.3
3,469,455	-				-1.4
3,469,455	-				+0.8
3,469,455	-				+0.2
3,469,455	-				-0.6
3,469,455	-				-1.9
3,469,455	-				-0.2
3,469,455	-				-0.4
3,469,455	-				+0.9
3,469,455	-				-0.4
3,469,455	-				+0.4
3,469,455	-				-1.2
3,469,455	-				-1.1
3,469,455	-				+0.8
3,469,455	-				-0.3
3,469,455	-				-1.1
3,469,455	-				-1.4
3,469,455	-				-2.8
3,469,455	-				+1.9
3,469,455	-				-0.1
3,469,455	-				-0.7
3,469,455	-				+0.1
3,469,455	-				-1.4
3,469,455	-				+0.5
3,469,455	-				+1.3
3,469,455	-				-0.8
3,469,455	-				+0.3
3,469,455	-				+0.7
3,469,455	-				+0.3
3,469,455	-				-1.4
3,469,455	-				+0.6
3,469,455	-				+0.1
3,469,464	+				+0.7
3,469,467	-				-0.8
3,469,472	+				+0.9
3,469,480	-				-1.8
3,469,483	+				+0.6
3,469,499	+				+0.9
3,469,511	+				+0.2
3,469,511	+				+0.2
3,469,513	+				-1.4
3,469,521	+				+0.1
3,469,526	+				+0.1
3,469,526	+				-0.7
3,469,526	+				+1.4
3,469,526	+				+0.6
3,469,526	+				-1.4
3,469,526	+				-0.6
3,469,526	+				-0.5
3,469,526	+				-0.0
3,469,529	-				-2.7
3,469,534	-		GFF3429	0.10	+0.8
3,469,534	-		GFF3429	0.10	-0.2
3,469,534	-		GFF3429	0.10	+1.1
3,469,534	-		GFF3429	0.10	+0.5
3,469,534	-		GFF3429	0.10	+0.5
3,469,534	-		GFF3429	0.10	-0.5
3,469,534	-		GFF3429	0.10	-0.7
3,469,551	+		GFF3429	0.12	+0.3
3,469,572	+		GFF3429	0.15	+1.1
3,469,583	+		GFF3429	0.16	-0.7
3,469,636	+		GFF3429	0.23	-0.4
3,469,651	-		GFF3429	0.25	-0.1
3,469,666	+		GFF3429	0.27	-0.7
3,469,733	-		GFF3429	0.36	-1.2
3,469,760	-		GFF3429	0.40	-1.7
3,469,798	-		GFF3429	0.45	-1.7
3,469,824	+		GFF3429	0.48	-1.6
3,469,838	+		GFF3429	0.50	-0.5
3,469,857	+		GFF3429	0.52	-0.0
3,469,865	-		GFF3429	0.53	+0.7
3,469,871	-		GFF3429	0.54	+0.9
3,469,895	-		GFF3429	0.57	-0.2
3,469,897	+		GFF3429	0.58	+0.2
3,469,928	+		GFF3429	0.62	+0.1
3,469,928	-		GFF3429	0.62	-1.5
3,469,931	-		GFF3429	0.62	-0.1
3,469,936	-		GFF3429	0.63	-0.4
3,469,951	-		GFF3429	0.65	-0.2
3,469,974	-		GFF3429	0.68	-0.5
3,469,979	-		GFF3429	0.68	+1.1
3,469,991	+		GFF3429	0.70	+0.3
3,469,991	+		GFF3429	0.70	-0.5
3,469,991	+		GFF3429	0.70	+0.2
3,469,996	+		GFF3429	0.70	-2.7
3,469,996	+		GFF3429	0.70	+0.8
3,469,999	-		GFF3429	0.71	+0.7
3,469,999	-		GFF3429	0.71	-0.6
3,469,999	-		GFF3429	0.71	-1.2
3,469,999	-		GFF3429	0.71	+0.0
3,469,999	-		GFF3429	0.71	-2.1
3,470,003	+		GFF3429	0.71	+0.4
3,470,008	+		GFF3429	0.72	+0.6
3,470,011	-		GFF3429	0.72	+0.6
3,470,016	-		GFF3429	0.73	-0.3
3,470,046	+		GFF3429	0.77	-0.5
3,470,069	+		GFF3429	0.80	-0.2
3,470,092	-		GFF3429	0.83	+0.1
3,470,120	-		GFF3429	0.87	-1.2
3,470,153	+				+1.7
3,470,153	+				-1.3
3,470,153	+				-0.3
3,470,153	+				+0.1
3,470,160	+				+0.3
3,470,160	+				+0.1
3,470,160	+				+0.9
3,470,160	+				+0.1
3,470,161	-				-0.6
3,470,161	-				-0.7
3,470,168	-				-0.3
3,470,168	-				-0.7
3,470,215	+				+0.3
3,470,223	-				-1.7
3,470,223	-				+0.1
3,470,223	-				+0.1
3,470,252	+				+0.4
3,470,259	-				+0.6
3,470,270	+				-0.1
3,470,276	+				-0.3
3,470,276	+				-0.3
3,470,276	+				-0.4
3,470,276	+				-1.1
3,470,276	+				-2.2
3,470,276	+				-0.0
3,470,276	+				+0.4
3,470,276	+				-0.7
3,470,276	+				+0.8
3,470,276	+				-0.1
3,470,276	+				-0.5
3,470,284	-				-0.3
3,470,284	-				+0.2
3,470,284	-				-0.1
3,470,284	-				-0.6
3,470,284	-				+0.1
3,470,284	-				+0.6
3,470,284	-				-0.9
3,470,284	-				-0.0
3,470,284	-				-0.7
3,470,284	-				+0.9
3,470,284	-				-0.2
3,470,284	-				-0.1
3,470,288	+				-1.8
3,470,302	+				-0.3
3,470,302	+				+0.6
3,470,303	+				-1.6
3,470,311	-				+1.0
3,470,311	-				-0.9
3,470,336	+				-1.7
3,470,336	+				-0.5
3,470,344	+				+0.8
3,470,344	-				+0.3
3,470,368	+				-1.4
3,470,368	+				-0.9
3,470,368	+				+0.6
3,470,368	+				-1.7
3,470,368	+				-0.2
3,470,368	+				+0.1
3,470,368	+				-0.2
3,470,368	+				+1.0
3,470,368	+				-0.1
3,470,368	+				-1.7
3,470,368	+				-1.0
3,470,368	+				-0.1
3,470,368	+				+0.7
3,470,368	+				-0.3
3,470,368	+				+0.4
3,470,368	+				+0.1
3,470,368	+				+0.3
3,470,368	+				-0.9
3,470,368	+				-0.2
3,470,375	-				+0.1
3,470,376	-				+0.8
3,470,376	-				-1.0
3,470,376	-				-1.5
3,470,376	-				-1.1
3,470,376	-				+0.3
3,470,376	-				+1.3
3,470,376	-				-0.3
3,470,376	-				-0.4
3,470,376	-				-0.3
3,470,376	-				+0.1
3,470,376	-				+0.5
3,470,376	-				+0.6
3,470,381	-				+0.7
3,470,396	-				+0.4
3,470,408	+				+0.4
3,470,416	+				-1.4
3,470,416	+				+1.0
3,470,431	+				-0.7
3,470,439	-				+1.8
3,470,439	-				-1.3
3,470,441	+				-1.1
3,470,449	-				-0.0
3,470,454	-				+0.3
3,470,456	+				-0.7
3,470,464	-				-1.7
3,470,464	-				-0.8
3,470,499	+				+0.1
3,470,507	-				+0.6
3,470,508	-				-0.1
3,470,524	-				+0.1
3,470,550	+		GFF3430	0.11	-0.8
3,470,550	+		GFF3430	0.11	+0.1
3,470,553	-		GFF3430	0.11	-1.6
3,470,553	-		GFF3430	0.11	-1.3
3,470,553	-		GFF3430	0.11	-1.1
3,470,553	-		GFF3430	0.11	-0.5
3,470,558	-		GFF3430	0.11	-1.9
3,470,558	-		GFF3430	0.11	-2.0
3,470,558	-		GFF3430	0.11	-0.6
3,470,591	+		GFF3430	0.13	+1.3
3,470,592	+		GFF3430	0.13	-0.9
3,470,593	+		GFF3430	0.13	+0.4
3,470,593	+		GFF3430	0.13	-1.3
3,470,599	+		GFF3430	0.14	+0.3
3,470,599	-		GFF3430	0.14	-0.3
3,470,615	-		GFF3430	0.14	-0.4
3,470,621	+		GFF3430	0.15	-0.1
3,470,666	+		GFF3430	0.17	-0.9
3,470,684	+		GFF3430	0.18	+1.2
3,470,688	+		GFF3430	0.19	-2.7
3,470,690	+		GFF3430	0.19	-0.0
3,470,696	-		GFF3430	0.19	-1.4
3,470,721	-		GFF3430	0.21	-0.5
3,470,723	+		GFF3430	0.21	-1.0
3,470,723	+		GFF3430	0.21	-0.8
3,470,723	+		GFF3430	0.21	+0.1
3,470,723	+		GFF3430	0.21	-0.4
3,470,731	-		GFF3430	0.21	+0.0
3,470,731	-		GFF3430	0.21	-1.2
3,470,738	+		GFF3430	0.22	+1.1
3,470,743	+		GFF3430	0.22	-0.5
3,470,743	+		GFF3430	0.22	-0.5
3,470,743	+		GFF3430	0.22	+0.1
3,470,743	+		GFF3430	0.22	-2.1
3,470,743	+		GFF3430	0.22	-0.9
3,470,743	+		GFF3430	0.22	+1.6
3,470,743	+		GFF3430	0.22	-0.9
3,470,743	+		GFF3430	0.22	-0.1
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