Strain Fitness in Sphingobium sp. HT1-2 around GFF3399

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,443,461	+		GFF3398	0.40	-0.9
3,443,463	+		GFF3398	0.40	+0.8
3,443,463	+		GFF3398	0.40	+0.8
3,443,463	+		GFF3398	0.40	+0.1
3,443,463	+		GFF3398	0.40	-0.1
3,443,465	+		GFF3398	0.40	+0.4
3,443,471	-		GFF3398	0.40	+0.3
3,443,471	-		GFF3398	0.40	+1.7
3,443,473	-		GFF3398	0.41	-0.0
3,443,489	+		GFF3398	0.41	+0.5
3,443,519	+		GFF3398	0.43	+1.9
3,443,519	-		GFF3398	0.43	-0.6
3,443,534	+		GFF3398	0.44	+0.4
3,443,535	-		GFF3398	0.44	+0.4
3,443,542	+		GFF3398	0.45	+2.0
3,443,542	+		GFF3398	0.45	+0.7
3,443,550	+		GFF3398	0.45	+1.1
3,443,550	-		GFF3398	0.45	+0.5
3,443,550	-		GFF3398	0.45	+1.1
3,443,550	-		GFF3398	0.45	-1.9
3,443,550	-		GFF3398	0.45	+0.1
3,443,577	+		GFF3398	0.47	+0.6
3,443,577	+		GFF3398	0.47	-0.7
3,443,577	+		GFF3398	0.47	+1.3
3,443,582	+		GFF3398	0.47	+1.1
3,443,585	-		GFF3398	0.47	+0.4
3,443,585	-		GFF3398	0.47	+0.1
3,443,585	-		GFF3398	0.47	+0.8
3,443,585	-		GFF3398	0.47	-0.5
3,443,585	-		GFF3398	0.47	-1.6
3,443,614	-		GFF3398	0.49	-0.9
3,443,698	+		GFF3398	0.54	+0.3
3,443,698	+		GFF3398	0.54	+0.7
3,443,698	+		GFF3398	0.54	+0.0
3,443,698	+		GFF3398	0.54	-1.3
3,443,698	+		GFF3398	0.54	+1.1
3,443,698	+		GFF3398	0.54	+1.0
3,443,698	+		GFF3398	0.54	+0.7
3,443,698	+		GFF3398	0.54	+0.7
3,443,704	-		GFF3398	0.54	-2.3
3,443,704	-		GFF3398	0.54	+0.5
3,443,706	-		GFF3398	0.54	-0.1
3,443,706	-		GFF3398	0.54	+1.5
3,443,706	-		GFF3398	0.54	-0.5
3,443,706	-		GFF3398	0.54	+1.3
3,443,706	-		GFF3398	0.54	+1.1
3,443,706	-		GFF3398	0.54	+0.1
3,443,710	-		GFF3398	0.55	+0.4
3,443,711	+		GFF3398	0.55	+1.7
3,443,737	-		GFF3398	0.56	-0.1
3,443,748	+		GFF3398	0.57	+1.7
3,443,758	+		GFF3398	0.58	+0.4
3,443,759	-		GFF3398	0.58	+0.9
3,443,759	-		GFF3398	0.58	-0.4
3,443,761	-		GFF3398	0.58	+0.5
3,443,761	-		GFF3398	0.58	-0.2
3,443,766	-		GFF3398	0.58	+0.7
3,443,777	+		GFF3398	0.59	+0.4
3,443,834	+		GFF3398	0.62	+1.2
3,443,849	+		GFF3398	0.63	+0.8
3,443,857	-		GFF3398	0.64	-1.8
3,443,857	-		GFF3398	0.64	+1.1
3,443,903	-		GFF3398	0.66	+0.0
3,443,929	+		GFF3398	0.68	+0.6
3,443,965	+		GFF3398	0.70	+1.3
3,443,971	+		GFF3398	0.70	+1.4
3,443,991	+		GFF3398	0.72	+0.8
3,443,991	+		GFF3398	0.72	+1.4
3,443,991	+		GFF3398	0.72	+0.1
3,443,999	-		GFF3398	0.72	+1.2
3,443,999	-		GFF3398	0.72	+0.4
3,444,035	-		GFF3398	0.74	+1.3
3,444,035	-		GFF3398	0.74	-0.4
3,444,041	+		GFF3398	0.75	-1.0
3,444,046	+		GFF3398	0.75	+0.4
3,444,046	+		GFF3398	0.75	+0.9
3,444,049	-		GFF3398	0.75	+1.6
3,444,049	-		GFF3398	0.75	+0.9
3,444,051	+		GFF3398	0.75	+1.6
3,444,051	+		GFF3398	0.75	+1.3
3,444,051	+		GFF3398	0.75	+1.7
3,444,051	+		GFF3398	0.75	+0.7
3,444,051	+		GFF3398	0.75	+0.6
3,444,051	+		GFF3398	0.75	+1.1
3,444,051	+		GFF3398	0.75	+1.6
3,444,054	-		GFF3398	0.75	+0.4
3,444,057	+		GFF3398	0.76	+0.6
3,444,059	-		GFF3398	0.76	+0.5
3,444,059	-		GFF3398	0.76	+0.3
3,444,059	-		GFF3398	0.76	+1.0
3,444,059	-		GFF3398	0.76	-0.5
3,444,059	-		GFF3398	0.76	+0.8
3,444,064	-		GFF3398	0.76	+1.0
3,444,079	+		GFF3398	0.77	-1.4
3,444,079	+		GFF3398	0.77	+0.4
3,444,079	+		GFF3398	0.77	-0.0
3,444,079	+		GFF3398	0.77	+0.8
3,444,079	+		GFF3398	0.77	+0.5
3,444,079	+		GFF3398	0.77	+1.2
3,444,085	-		GFF3398	0.77	-0.1
3,444,087	-		GFF3398	0.77	+0.9
3,444,087	-		GFF3398	0.77	-0.3
3,444,087	-		GFF3398	0.77	-0.7
3,444,087	-		GFF3398	0.77	+1.9
3,444,091	+		GFF3398	0.78	+0.8
3,444,097	+		GFF3398	0.78	-0.1
3,444,137	-		GFF3398	0.80	-1.3
3,444,166	+		GFF3398	0.82	+0.7
3,444,174	-		GFF3398	0.83	+0.1
3,444,189	-		GFF3398	0.83	-0.7
3,444,206	+		GFF3398	0.84	+1.1
3,444,206	+		GFF3398	0.84	+0.6
3,444,206	+		GFF3398	0.84	-1.4
3,444,206	+		GFF3398	0.84	+1.4
3,444,214	+		GFF3398	0.85	+0.2
3,444,221	+		GFF3398	0.85	+0.4
3,444,238	+		GFF3398	0.86	+1.7
3,444,238	+		GFF3398	0.86	+1.3
3,444,240	+		GFF3398	0.87	-0.9
3,444,250	+		GFF3398	0.87	+0.1
3,444,256	-		GFF3398	0.87	-0.1
3,444,263	+		GFF3398	0.88	+0.8
3,444,266	-		GFF3398	0.88	+1.3
3,444,270	+		GFF3398	0.88	-0.8
3,444,302	+				+0.1
3,444,302	-				+1.2
3,444,313	+				+0.2
3,444,337	+				+0.7
3,444,347	+				+0.2
3,444,379	+				+0.6
3,444,379	+				+0.4
3,444,379	+				+0.2
3,444,381	+				+0.8
3,444,381	+				-0.8
3,444,381	+				+0.3
3,444,387	-				+0.2
3,444,389	-				+0.0
3,444,389	-				+0.8
3,444,405	+				+0.5
3,444,417	+				+0.3
3,444,425	-				+0.3
3,444,427	+				-0.3
3,444,434	+				+0.2
3,444,434	+				+1.0
3,444,434	+				-0.3
3,444,434	+				-0.9
3,444,436	+				-0.1
3,444,436	+				+0.6
3,444,436	+				-0.0
3,444,436	+				-0.0
3,444,436	+				+0.1
3,444,437	-				+1.3
3,444,437	-				+0.3
3,444,441	+				-2.4
3,444,441	+				+0.4
3,444,442	-				-1.2
3,444,442	-				-1.9
3,444,442	-				+1.1
3,444,442	-				+1.2
3,444,442	-				+1.0
3,444,442	-				+1.3
3,444,442	-				-1.0
3,444,442	-				+0.2
3,444,444	-				+0.8
3,444,444	-				+0.4
3,444,444	-				+0.3
3,444,446	+				+1.2
3,444,446	+				-0.4
3,444,446	+				+1.0
3,444,483	+				+1.0
3,444,560	-		GFF3399	0.12	+1.6
3,444,564	+		GFF3399	0.12	+0.3
3,444,564	+		GFF3399	0.12	-1.0
3,444,566	-		GFF3399	0.13	+0.3
3,444,588	+		GFF3399	0.15	+0.6
3,444,597	-		GFF3399	0.16	-0.2
3,444,621	-		GFF3399	0.19	-2.3
3,444,621	-		GFF3399	0.19	-0.6
3,444,623	+		GFF3399	0.20	+0.3
3,444,631	-		GFF3399	0.21	+0.5
3,444,633	+		GFF3399	0.21	+0.7
3,444,677	-		GFF3399	0.26	+0.2
3,444,691	+		GFF3399	0.28	+1.0
3,444,736	+		GFF3399	0.33	+0.2
3,444,756	-		GFF3399	0.36	+1.1
3,444,771	-		GFF3399	0.38	+0.2
3,444,794	+		GFF3399	0.40	-1.6
3,444,802	-		GFF3399	0.41	-0.3
3,444,802	-		GFF3399	0.41	+1.1
3,444,821	-		GFF3399	0.44	+1.1
3,444,871	-		GFF3399	0.50	+0.5
3,444,885	+		GFF3399	0.51	+1.4
3,444,894	+		GFF3399	0.52	+0.9
3,444,896	+		GFF3399	0.53	-0.4
3,444,896	+		GFF3399	0.53	+0.5
3,444,906	+		GFF3399	0.54	+0.5
3,444,914	-		GFF3399	0.55	+1.9
3,444,935	+		GFF3399	0.57	-0.1
3,444,958	-		GFF3399	0.60	+1.3
3,444,966	-		GFF3399	0.61	-0.9
3,444,991	+		GFF3399	0.64	+0.3
3,444,994	+		GFF3399	0.65	-0.8
3,444,994	+		GFF3399	0.65	+0.9
3,445,014	+		GFF3399	0.67	+0.7
3,445,022	-		GFF3399	0.68	-0.5
3,445,047	+		GFF3399	0.71	+0.7
3,445,055	-		GFF3399	0.72	+1.5
3,445,057	+		GFF3399	0.72	+0.7
3,445,057	+		GFF3399	0.72	-0.5
3,445,057	+		GFF3399	0.72	+0.9
3,445,057	+		GFF3399	0.72	+1.2
3,445,057	+		GFF3399	0.72	+0.4
3,445,057	+		GFF3399	0.72	+1.1
3,445,057	+		GFF3399	0.72	-0.5
3,445,057	+		GFF3399	0.72	-1.2
3,445,057	+		GFF3399	0.72	-0.2
3,445,057	+		GFF3399	0.72	+0.3
3,445,057	+		GFF3399	0.72	-0.0
3,445,057	+		GFF3399	0.72	+1.4
3,445,057	+		GFF3399	0.72	-1.2
3,445,057	+		GFF3399	0.72	-0.9
3,445,057	+		GFF3399	0.72	-0.3
3,445,062	+		GFF3399	0.73	-0.4
3,445,065	-		GFF3399	0.73	+0.6
3,445,065	-		GFF3399	0.73	+0.0
3,445,065	-		GFF3399	0.73	-0.7
3,445,065	-		GFF3399	0.73	+0.0
3,445,065	-		GFF3399	0.73	+0.7
3,445,065	-		GFF3399	0.73	-0.5
3,445,065	-		GFF3399	0.73	-1.7
3,445,077	+		GFF3399	0.75	-0.2
3,445,077	+		GFF3399	0.75	+0.1
3,445,077	+		GFF3399	0.75	-0.0
3,445,077	+		GFF3399	0.75	+0.2
3,445,077	+		GFF3399	0.75	+1.1
3,445,077	-		GFF3399	0.75	-0.7
3,445,085	-		GFF3399	0.76	+1.6
3,445,085	-		GFF3399	0.76	-0.5
3,445,085	-		GFF3399	0.76	-1.6
3,445,085	-		GFF3399	0.76	+2.1
3,445,085	-		GFF3399	0.76	+0.4
3,445,089	+		GFF3399	0.76	+0.8
3,445,094	+		GFF3399	0.77	+1.9
3,445,102	-		GFF3399	0.78	-0.3
3,445,111	+		GFF3399	0.79	+0.1
3,445,119	-		GFF3399	0.80	+0.3
3,445,119	-		GFF3399	0.80	+0.4
3,445,166	+		GFF3399	0.85	+0.1
3,445,172	-		GFF3399	0.86	+1.2
3,445,176	-		GFF3399	0.87	-0.4
3,445,212	+				-0.1
3,445,212	+				-1.1
3,445,223	-				+1.6
3,445,225	-				+0.5
3,445,240	-				+0.9
3,445,264	-				-1.3
3,445,270	+				+0.6
3,445,278	-				-0.9
3,445,281	-				-1.3
3,445,307	+				-1.3
3,445,385	-				+0.4
3,445,412	+		GFF3400	0.11	+0.1
3,445,427	+		GFF3400	0.13	-1.7
3,445,452	+		GFF3400	0.15	+1.0
3,445,463	+		GFF3400	0.16	+1.7
3,445,471	-		GFF3400	0.17	+0.4
3,445,502	-		GFF3400	0.19	+1.8
3,445,525	+		GFF3400	0.21	+1.1
3,445,526	-		GFF3400	0.22	+1.0
3,445,556	-		GFF3400	0.24	-0.8
3,445,592	-		GFF3400	0.27	+1.3
3,445,594	+		GFF3400	0.28	+1.7
3,445,603	+		GFF3400	0.28	+0.4
3,445,604	-		GFF3400	0.28	+0.8
3,445,622	+		GFF3400	0.30	+1.5
3,445,627	+		GFF3400	0.30	+1.2
3,445,635	-		GFF3400	0.31	+1.9
3,445,640	+		GFF3400	0.32	+0.5
3,445,648	-		GFF3400	0.32	-0.0
3,445,656	-		GFF3400	0.33	+0.6
3,445,662	+		GFF3400	0.34	+1.5
3,445,662	+		GFF3400	0.34	-0.2
3,445,670	-		GFF3400	0.34	-1.0
3,445,700	+		GFF3400	0.37	-1.4
3,445,724	-		GFF3400	0.39	-0.2
3,445,726	-		GFF3400	0.39	+0.5
3,445,728	+		GFF3400	0.39	+0.8
3,445,732	+		GFF3400	0.40	-0.4
3,445,732	-		GFF3400	0.40	+1.4
3,445,733	+		GFF3400	0.40	-0.3
3,445,735	+		GFF3400	0.40	-0.0
3,445,737	+		GFF3400	0.40	-0.7
3,445,752	-		GFF3400	0.41	+0.2
3,445,800	-		GFF3400	0.46	+1.7
3,445,805	-		GFF3400	0.46	+0.9
3,445,813	+		GFF3400	0.47	+0.7
3,445,813	+		GFF3400	0.47	-0.3
3,445,813	+		GFF3400	0.47	-2.2
3,445,821	-		GFF3400	0.48	-0.6
3,445,821	-		GFF3400	0.48	-0.6
3,445,821	-		GFF3400	0.48	+0.6
3,445,821	-		GFF3400	0.48	+0.6
3,445,821	-		GFF3400	0.48	-1.3
3,445,821	-		GFF3400	0.48	-0.4
3,445,821	-		GFF3400	0.48	+1.1
3,445,821	-		GFF3400	0.48	-0.3
3,445,823	+		GFF3400	0.48	-0.2
3,445,833	+		GFF3400	0.49	+1.1
3,445,841	-		GFF3400	0.49	+1.1
3,445,847	+		GFF3400	0.50	+0.3
3,445,848	+		GFF3400	0.50	-1.5
3,445,848	+		GFF3400	0.50	-2.3
3,445,855	+		GFF3400	0.51	+1.4
3,445,893	+		GFF3400	0.54	+1.1
3,445,907	-		GFF3400	0.55	-1.6
3,445,935	+		GFF3400	0.58	-0.4
3,445,943	-		GFF3400	0.58	+0.7
3,445,961	+		GFF3400	0.60	+0.9
3,445,989	+		GFF3400	0.62	-0.5
3,446,018	+		GFF3400	0.65	-1.4
3,446,026	-		GFF3400	0.66	+1.4
3,446,028	+		GFF3400	0.66	+1.3
3,446,028	+		GFF3400	0.66	+0.3
3,446,036	-		GFF3400	0.66	+0.9
3,446,036	-		GFF3400	0.66	-0.1
3,446,038	+		GFF3400	0.67	+0.9
3,446,048	-		GFF3400	0.68	+0.5
3,446,063	+		GFF3400	0.69	-0.4
3,446,087	+		GFF3400	0.71	-0.3
3,446,095	-		GFF3400	0.72	-1.5
3,446,097	+		GFF3400	0.72	+0.3
3,446,102	+		GFF3400	0.72	+0.1
3,446,107	+		GFF3400	0.73	-1.4
3,446,128	+		GFF3400	0.75	-1.5
3,446,128	+		GFF3400	0.75	-0.4
3,446,133	+		GFF3400	0.75	+0.5
3,446,133	+		GFF3400	0.75	+0.4
3,446,133	+		GFF3400	0.75	+0.7
3,446,133	+		GFF3400	0.75	+1.2
3,446,136	-		GFF3400	0.75	-0.4
3,446,136	-		GFF3400	0.75	+0.2
3,446,141	-		GFF3400	0.76	-0.3
3,446,210	+		GFF3400	0.82	-0.4
3,446,210	+		GFF3400	0.82	+0.9
3,446,210	+		GFF3400	0.82	+1.6
3,446,215	+		GFF3400	0.82	-1.9
3,446,215	+		GFF3400	0.82	-1.5
3,446,215	+		GFF3400	0.82	-0.6
3,446,218	-		GFF3400	0.83	+1.2
3,446,223	-		GFF3400	0.83	+0.6
3,446,223	-		GFF3400	0.83	+0.0
3,446,234	+		GFF3400	0.84	-0.3
3,446,234	+		GFF3400	0.84	+1.2
3,446,235	-		GFF3400	0.84	-0.3
3,446,257	+		GFF3400	0.86	+1.2
3,446,257	+		GFF3400	0.86	+1.4
3,446,265	-		GFF3400	0.87	-1.9
3,446,274	-		GFF3400	0.87	-0.7
3,446,277	+		GFF3400	0.88	-1.4