Strain Fitness in Sphingobium sp. HT1-2 around GFF3389

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,428,159	+		GFF3387	0.86	+1.0
3,428,167	-		GFF3387	0.86	+0.6
3,428,167	-		GFF3387	0.86	+1.5
3,428,167	-		GFF3387	0.86	+0.9
3,428,167	-		GFF3387	0.86	-0.9
3,428,181	+		GFF3387	0.88	+0.1
3,428,181	+		GFF3387	0.88	+1.1
3,428,189	-		GFF3387	0.88	+0.6
3,428,189	-		GFF3387	0.88	-0.4
3,428,198	+		GFF3387	0.89	+1.1
3,428,219	-				-0.6
3,428,236	+				-0.2
3,428,298	+				+0.8
3,428,306	-				+0.2
3,428,307	-				-0.6
3,428,326	-				+0.6
3,428,336	-				+0.4
3,428,366	+				+0.5
3,428,366	+				-0.1
3,428,366	+				+0.5
3,428,366	+				-1.8
3,428,366	+				-0.1
3,428,366	+				+0.1
3,428,366	+				+0.5
3,428,366	+				+0.1
3,428,366	+				+1.1
3,428,366	+				-0.4
3,428,366	+				-1.3
3,428,366	+				-1.0
3,428,366	+				+0.9
3,428,366	+				+0.3
3,428,366	+				+1.0
3,428,366	+				+2.0
3,428,366	+				-0.5
3,428,366	+				+1.5
3,428,366	+				+1.7
3,428,366	+				+1.6
3,428,366	+				-0.6
3,428,366	+				+0.9
3,428,366	+				+0.3
3,428,366	+				+1.3
3,428,366	+				+0.2
3,428,366	+				+0.2
3,428,366	+				-0.4
3,428,366	+				+2.2
3,428,366	+				-0.9
3,428,366	+				-0.5
3,428,366	+				-0.3
3,428,366	+				+0.1
3,428,366	+				+0.2
3,428,366	+				+1.1
3,428,366	+				+0.1
3,428,366	+				-0.3
3,428,366	+				+1.1
3,428,366	+				-0.7
3,428,366	+				-0.6
3,428,369	-				+1.2
3,428,374	-				+0.8
3,428,374	-				-2.1
3,428,374	-				+0.3
3,428,374	-				+0.9
3,428,374	-				+1.6
3,428,374	-				-0.4
3,428,374	-				+0.2
3,428,374	-				+0.4
3,428,374	-				+1.3
3,428,374	-				+0.1
3,428,374	-				-1.9
3,428,374	-				-1.4
3,428,374	-				-1.3
3,428,374	-				+0.1
3,428,374	-				-0.4
3,428,374	-				+0.4
3,428,374	-				+0.9
3,428,374	-				+2.0
3,428,374	-				+1.2
3,428,374	-				-1.0
3,428,374	-				-1.3
3,428,374	-				+0.5
3,428,374	-				-0.6
3,428,374	-				+1.2
3,428,374	-				+0.4
3,428,374	-				-0.5
3,428,374	-				+1.1
3,428,374	-				+0.6
3,428,374	-				-0.6
3,428,374	-				+1.4
3,428,374	-				-1.7
3,428,374	-				+0.7
3,428,376	+				-1.4
3,428,380	-				+0.5
3,428,384	-				+0.2
3,428,386	+				-0.4
3,428,449	+				-1.0
3,428,457	-		GFF3388	0.10	+1.1
3,428,474	-		GFF3388	0.13	+0.9
3,428,474	-		GFF3388	0.13	-0.9
3,428,482	+		GFF3388	0.15	+1.7
3,428,495	-		GFF3388	0.17	-0.8
3,428,524	+		GFF3388	0.22	+0.2
3,428,584	+		GFF3388	0.33	+1.4
3,428,601	-		GFF3388	0.36	+0.4
3,428,631	+		GFF3388	0.41	+0.9
3,428,632	-		GFF3388	0.42	-0.9
3,428,638	+		GFF3388	0.43	+0.3
3,428,651	-		GFF3388	0.45	-0.1
3,428,682	-		GFF3388	0.50	+0.3
3,428,731	-		GFF3388	0.59	+0.5
3,428,731	-		GFF3388	0.59	+0.7
3,428,780	-		GFF3388	0.68	+0.2
3,428,790	+		GFF3388	0.70	+0.0
3,428,790	+		GFF3388	0.70	+0.5
3,428,790	+		GFF3388	0.70	-1.3
3,428,790	+		GFF3388	0.70	-0.4
3,428,790	+		GFF3388	0.70	-2.3
3,428,798	-		GFF3388	0.71	+0.8
3,428,798	-		GFF3388	0.71	-0.5
3,428,798	-		GFF3388	0.71	+1.4
3,428,845	-		GFF3388	0.80	-0.0
3,428,851	-		GFF3388	0.81	+1.2
3,428,851	-		GFF3388	0.81	+0.0
3,428,919	+				+1.1
3,428,922	+				+1.1
3,428,927	+				+0.3
3,428,933	+				+0.2
3,428,941	-				+0.5
3,428,992	+				+0.7
3,428,992	+				-0.8
3,429,028	+				+2.2
3,429,028	+				+0.1
3,429,028	+				-0.1
3,429,028	+				+1.1
3,429,028	+				-0.4
3,429,034	+				-1.3
3,429,036	-				-0.5
3,429,036	-				-0.2
3,429,036	-				-0.5
3,429,041	-				+1.8
3,429,041	-				+0.0
3,429,041	-				+1.0
3,429,041	-				+1.3
3,429,051	-				-0.3
3,429,061	+				+0.2
3,429,076	-				+0.1
3,429,080	-				-0.2
3,429,085	-				-0.7
3,429,085	-				+0.4
3,429,087	-				+0.1
3,429,134	+				+0.0
3,429,148	+				+0.6
3,429,194	+		GFF3389	0.16	+0.4
3,429,225	+		GFF3389	0.23	+0.7
3,429,233	-		GFF3389	0.25	+0.8
3,429,263	+		GFF3389	0.32	-2.7
3,429,263	+		GFF3389	0.32	+1.0
3,429,264	+		GFF3389	0.32	-1.3
3,429,269	+		GFF3389	0.34	-0.6
3,429,271	-		GFF3389	0.34	+0.6
3,429,272	-		GFF3389	0.34	+0.8
3,429,284	-		GFF3389	0.37	+0.9
3,429,289	+		GFF3389	0.38	-0.1
3,429,294	+		GFF3389	0.39	-0.8
3,429,294	+		GFF3389	0.39	+0.4
3,429,294	-		GFF3389	0.39	+1.4
3,429,295	-		GFF3389	0.40	-0.1
3,429,304	+		GFF3389	0.42	+1.6
3,429,304	+		GFF3389	0.42	-0.0
3,429,304	+		GFF3389	0.42	-1.1
3,429,304	+		GFF3389	0.42	-0.1
3,429,304	+		GFF3389	0.42	-0.1
3,429,304	+		GFF3389	0.42	+1.0
3,429,304	+		GFF3389	0.42	-0.1
3,429,304	+		GFF3389	0.42	-0.4
3,429,304	+		GFF3389	0.42	-2.1
3,429,304	+		GFF3389	0.42	+0.7
3,429,304	+		GFF3389	0.42	+0.2
3,429,304	+		GFF3389	0.42	+0.3
3,429,312	-		GFF3389	0.44	+0.6
3,429,312	-		GFF3389	0.44	-0.4
3,429,312	-		GFF3389	0.44	-0.6
3,429,312	-		GFF3389	0.44	+0.4
3,429,312	-		GFF3389	0.44	-0.4
3,429,312	-		GFF3389	0.44	+0.6
3,429,312	-		GFF3389	0.44	+1.4
3,429,312	-		GFF3389	0.44	-0.5
3,429,333	+		GFF3389	0.49	-1.9
3,429,360	+		GFF3389	0.55	-2.5
3,429,364	-		GFF3389	0.56	-0.0
3,429,368	-		GFF3389	0.57	+0.9
3,429,368	-		GFF3389	0.57	-0.3
3,429,381	+		GFF3389	0.60	+0.9
3,429,387	+		GFF3389	0.61	-0.1
3,429,395	+		GFF3389	0.63	-0.4
3,429,395	+		GFF3389	0.63	+0.2
3,429,395	-		GFF3389	0.63	+0.8
3,429,402	-		GFF3389	0.65	+0.3
3,429,408	-		GFF3389	0.66	+0.4
3,429,422	+		GFF3389	0.70	+0.3
3,429,429	+		GFF3389	0.71	+0.3
3,429,445	-		GFF3389	0.75	+0.3
3,429,466	-		GFF3389	0.80	-0.9
3,429,468	+		GFF3389	0.81	+0.9
3,429,476	-		GFF3389	0.83	+1.8
3,429,516	+				+1.0
3,429,530	+				+0.3
3,429,538	-				-2.3
3,429,567	-				+0.2
3,429,590	-				+0.6
3,429,625	-				+0.2
3,429,636	-				+1.8
3,429,636	-				-0.3
3,429,636	-				+0.4
3,429,636	-				+0.6
3,429,644	-				+0.5
3,429,650	+				+1.0
3,429,651	+				+2.2
3,429,651	+				+0.1
3,429,651	+				-1.3
3,429,652	+				+0.2
3,429,670	+		GFF3390	0.11	-0.3
3,429,683	-		GFF3390	0.14	+0.5
3,429,693	+		GFF3390	0.17	+0.5
3,429,715	-		GFF3390	0.22	-0.8
3,429,720	-		GFF3390	0.24	+0.6
3,429,722	+		GFF3390	0.24	+0.4
3,429,727	+		GFF3390	0.26	+0.6
3,429,735	-		GFF3390	0.28	-1.4
3,429,749	+		GFF3390	0.31	-1.5
3,429,754	+		GFF3390	0.32	-1.2
3,429,754	+		GFF3390	0.32	+0.2
3,429,839	+		GFF3390	0.54	+0.7
3,429,848	-		GFF3390	0.56	-2.5
3,429,875	-		GFF3390	0.63	+0.4
3,429,876	+		GFF3390	0.63	+0.8
3,429,913	-		GFF3390	0.72	+0.1
3,429,918	+		GFF3390	0.74	+0.2
3,429,931	+		GFF3390	0.77	+0.3
3,429,939	+		GFF3390	0.79	-1.3
3,429,940	+		GFF3390	0.79	-1.4
3,429,940	-		GFF3390	0.79	+0.7
3,429,945	+		GFF3390	0.81	-0.9
3,429,960	-		GFF3390	0.84	+0.4
3,429,965	-		GFF3390	0.86	-1.9
3,429,998	-				+0.3
3,429,999	+				+0.9
3,430,007	-				+0.2
3,430,062	-				+1.4
3,430,064	+				-0.1
3,430,069	+		GFF3391	0.11	+0.5
3,430,069	+		GFF3391	0.11	+1.0
3,430,069	+		GFF3391	0.11	-0.4
3,430,069	+		GFF3391	0.11	-0.3
3,430,077	-		GFF3391	0.13	+1.7
3,430,077	-		GFF3391	0.13	+0.7
3,430,090	+		GFF3391	0.17	-0.7
3,430,092	+		GFF3391	0.18	-0.5
3,430,092	+		GFF3391	0.18	+0.3
3,430,092	+		GFF3391	0.18	+1.3
3,430,099	+		GFF3391	0.20	-0.3
3,430,100	-		GFF3391	0.20	-0.6
3,430,100	-		GFF3391	0.20	+0.8
3,430,110	-		GFF3391	0.23	+0.1
3,430,112	+		GFF3391	0.24	-2.3
3,430,112	+		GFF3391	0.24	-0.1
3,430,112	+		GFF3391	0.24	+0.8
3,430,112	+		GFF3391	0.24	+0.3
3,430,112	+		GFF3391	0.24	+0.6
3,430,112	+		GFF3391	0.24	+0.3
3,430,120	-		GFF3391	0.26	+1.1
3,430,120	-		GFF3391	0.26	+0.8
3,430,120	-		GFF3391	0.26	-0.5
3,430,120	-		GFF3391	0.26	-0.8
3,430,155	-		GFF3391	0.37	-1.3
3,430,163	+		GFF3391	0.39	+0.7
3,430,169	-		GFF3391	0.41	+1.4
3,430,171	+		GFF3391	0.42	-0.1
3,430,190	+		GFF3391	0.47	+0.7
3,430,198	-		GFF3391	0.50	+1.7
3,430,230	+		GFF3391	0.59	-0.4
3,430,238	-		GFF3391	0.62	+0.4
3,430,277	+		GFF3391	0.74	+0.2
3,430,277	+		GFF3391	0.74	+1.1
3,430,278	+		GFF3391	0.74	+0.5
3,430,278	+		GFF3391	0.74	+1.4
3,430,285	-		GFF3391	0.76	+0.4
3,430,286	-		GFF3391	0.76	-0.4
3,430,294	+		GFF3391	0.79	+2.1
3,430,302	-		GFF3391	0.81	-0.3
3,430,319	+		GFF3391	0.86	-0.5
3,430,341	-				-0.4
3,430,341	-				+0.8
3,430,352	+				+0.4
3,430,352	+				-0.6
3,430,352	+				+1.1
3,430,352	+				+1.3
3,430,352	+				+0.8
3,430,360	-				-0.3
3,430,360	-				-0.0
3,430,360	-				-0.8
3,430,360	-				+1.1
3,430,398	+				-0.5
3,430,398	+				+0.5
3,430,414	-				-0.8
3,430,435	+				-0.6
3,430,435	+				+0.5
3,430,435	+				+0.4
3,430,435	+				+1.1
3,430,442	-				+0.6
3,430,442	-				+0.6
3,430,475	-				+2.0
3,430,475	-				+1.9
3,430,494	+				+0.6
3,430,500	-				+1.0