Strain Fitness in Sphingobium sp. HT1-2 around GFF3376

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,418,487	+		GFF3374	0.32	+0.5
3,418,505	-		GFF3374	0.39	-2.3
3,418,507	+		GFF3374	0.40	+0.7
3,418,508	+		GFF3374	0.41	+0.9
3,418,517	-		GFF3374	0.44	+1.6
3,418,517	-		GFF3374	0.44	-0.2
3,418,529	-		GFF3374	0.49	-1.6
3,418,529	-		GFF3374	0.49	+1.1
3,418,534	+		GFF3374	0.51	-0.0
3,418,534	+		GFF3374	0.51	+1.6
3,418,553	+		GFF3374	0.59	+0.1
3,418,559	-		GFF3374	0.61	+1.1
3,418,559	-		GFF3374	0.61	+1.5
3,418,571	+		GFF3374	0.66	-0.2
3,418,588	+		GFF3374	0.73	+0.1
3,418,615	+		GFF3374	0.84	+0.3
3,418,659	-				+1.7
3,418,669	+				+1.5
3,418,674	+				-0.3
3,418,700	+				+1.0
3,418,713	-				+0.5
3,418,742	-		GFF3375	0.11	+0.3
3,418,742	-		GFF3375	0.11	+0.4
3,418,742	-		GFF3375	0.11	+0.2
3,418,742	-		GFF3375	0.11	+0.4
3,418,747	+		GFF3375	0.12	-0.4
3,418,747	-		GFF3375	0.12	+0.7
3,418,755	-		GFF3375	0.13	+0.8
3,418,758	+		GFF3375	0.13	+0.3
3,418,766	-		GFF3375	0.14	+0.1
3,418,817	+		GFF3375	0.20	+0.7
3,418,837	+		GFF3375	0.23	+1.6
3,418,842	+		GFF3375	0.23	-1.7
3,418,842	+		GFF3375	0.23	-1.4
3,418,842	+		GFF3375	0.23	+1.0
3,418,842	+		GFF3375	0.23	-0.8
3,418,842	+		GFF3375	0.23	+1.5
3,418,847	+		GFF3375	0.24	-1.3
3,418,855	-		GFF3375	0.25	-1.1
3,418,855	-		GFF3375	0.25	-0.0
3,418,855	-		GFF3375	0.25	+0.0
3,418,855	-		GFF3375	0.25	+0.7
3,418,855	-		GFF3375	0.25	+1.1
3,418,866	+		GFF3375	0.26	+0.3
3,418,872	+		GFF3375	0.27	+0.9
3,418,874	-		GFF3375	0.27	+0.6
3,418,876	+		GFF3375	0.28	-0.1
3,418,876	+		GFF3375	0.28	+0.8
3,418,880	-		GFF3375	0.28	+0.3
3,418,880	-		GFF3375	0.28	-0.1
3,418,884	-		GFF3375	0.29	+0.7
3,418,884	-		GFF3375	0.29	+0.4
3,418,884	-		GFF3375	0.29	+0.2
3,418,901	+		GFF3375	0.31	-2.5
3,418,920	+		GFF3375	0.33	+1.2
3,418,933	+		GFF3375	0.35	-1.6
3,418,939	-		GFF3375	0.35	+0.6
3,418,953	+		GFF3375	0.37	-1.4
3,418,970	+		GFF3375	0.39	+1.0
3,418,975	+		GFF3375	0.40	-0.5
3,418,994	+		GFF3375	0.42	+0.0
3,418,996	-		GFF3375	0.42	+0.3
3,419,014	+		GFF3375	0.45	-1.7
3,419,049	+		GFF3375	0.49	-0.4
3,419,049	+		GFF3375	0.49	+0.6
3,419,051	+		GFF3375	0.49	+0.5
3,419,069	-		GFF3375	0.51	-2.0
3,419,069	-		GFF3375	0.51	+1.2
3,419,069	-		GFF3375	0.51	+0.3
3,419,069	-		GFF3375	0.51	+0.2
3,419,079	-		GFF3375	0.53	-0.7
3,419,080	+		GFF3375	0.53	-0.5
3,419,080	+		GFF3375	0.53	+0.0
3,419,088	-		GFF3375	0.54	+0.8
3,419,093	+		GFF3375	0.54	+0.1
3,419,093	+		GFF3375	0.54	+0.5
3,419,093	+		GFF3375	0.54	-1.1
3,419,101	-		GFF3375	0.55	-0.2
3,419,101	-		GFF3375	0.55	+0.3
3,419,101	-		GFF3375	0.55	+0.5
3,419,101	-		GFF3375	0.55	+0.1
3,419,101	-		GFF3375	0.55	+0.3
3,419,109	+		GFF3375	0.56	-1.0
3,419,109	+		GFF3375	0.56	+0.3
3,419,109	+		GFF3375	0.56	-1.3
3,419,117	-		GFF3375	0.57	+0.3
3,419,117	-		GFF3375	0.57	+0.1
3,419,143	+		GFF3375	0.61	-0.9
3,419,143	+		GFF3375	0.61	+1.6
3,419,151	-		GFF3375	0.62	-0.6
3,419,151	-		GFF3375	0.62	+1.5
3,419,151	-		GFF3375	0.62	-0.3
3,419,151	-		GFF3375	0.62	+0.0
3,419,153	+		GFF3375	0.62	+0.6
3,419,161	-		GFF3375	0.63	+0.3
3,419,184	+		GFF3375	0.66	+1.1
3,419,195	-		GFF3375	0.67	+1.4
3,419,195	-		GFF3375	0.67	-0.0
3,419,195	-		GFF3375	0.67	-0.3
3,419,218	-		GFF3375	0.70	-0.4
3,419,266	+		GFF3375	0.76	+0.3
3,419,302	+		GFF3375	0.80	-0.6
3,419,308	+		GFF3375	0.81	-0.8
3,419,308	+		GFF3375	0.81	+0.6
3,419,310	-		GFF3375	0.81	+0.2
3,419,310	-		GFF3375	0.81	-0.2
3,419,310	-		GFF3375	0.81	-0.0
3,419,310	-		GFF3375	0.81	+0.3
3,419,316	-		GFF3375	0.82	+0.3
3,419,323	+		GFF3375	0.83	+0.9
3,419,348	+		GFF3375	0.86	-0.7
3,419,358	+		GFF3375	0.87	-0.7
3,419,369	+		GFF3375	0.89	+0.7
3,419,377	-		GFF3375	0.90	+0.3
3,419,379	+		GFF3375	0.90	-0.2
3,419,389	-				+0.6
3,419,421	+				-0.3
3,419,421	+				+0.6
3,419,421	+				+1.1
3,419,429	-				-0.1
3,419,465	+				-1.5
3,419,470	+				-0.3
3,419,497	+				+0.2
3,419,515	+				+0.6
3,419,520	+				+0.2
3,419,544	+		GFF3376	0.11	+0.6
3,419,557	+		GFF3376	0.14	-1.6
3,419,557	+		GFF3376	0.14	+0.5
3,419,557	+		GFF3376	0.14	+0.2
3,419,557	+		GFF3376	0.14	-1.6
3,419,558	+		GFF3376	0.14	-0.7
3,419,559	-		GFF3376	0.14	+0.6
3,419,565	-		GFF3376	0.15	+2.0
3,419,577	+		GFF3376	0.17	-1.2
3,419,587	-		GFF3376	0.18	+0.4
3,419,589	+		GFF3376	0.19	+1.2
3,419,597	-		GFF3376	0.20	-0.0
3,419,646	+		GFF3376	0.28	-1.5
3,419,646	+		GFF3376	0.28	-1.7
3,419,675	+		GFF3376	0.33	+0.1
3,419,675	+		GFF3376	0.33	+0.6
3,419,676	-		GFF3376	0.33	-0.1
3,419,683	-		GFF3376	0.34	+1.1
3,419,733	-		GFF3376	0.42	-0.9
3,419,771	+		GFF3376	0.48	+0.7
3,419,779	-		GFF3376	0.49	+1.0
3,419,782	+		GFF3376	0.50	+0.4
3,419,783	+		GFF3376	0.50	+0.8
3,419,790	-		GFF3376	0.51	+0.7
3,419,790	-		GFF3376	0.51	-1.7
3,419,800	+		GFF3376	0.53	+0.1
3,419,805	+		GFF3376	0.53	+0.8
3,419,810	+		GFF3376	0.54	+1.0
3,419,824	-		GFF3376	0.57	+0.7
3,419,828	+		GFF3376	0.57	+2.0
3,419,913	+		GFF3376	0.71	+0.5
3,419,913	+		GFF3376	0.71	+1.8
3,419,921	-		GFF3376	0.72	-1.6
3,419,921	-		GFF3376	0.72	+0.9
3,419,921	-		GFF3376	0.72	-0.6
3,419,947	+		GFF3376	0.76	+0.2
3,419,955	-		GFF3376	0.78	-2.0
3,419,986	+		GFF3376	0.83	+0.4
3,419,994	-		GFF3376	0.84	-1.4
3,419,994	-		GFF3376	0.84	+0.2
3,420,018	+		GFF3376	0.88	+0.3
3,420,022	+		GFF3376	0.88	+0.1
3,420,025	-		GFF3376	0.89	+0.4
3,420,051	+				+0.6
3,420,051	+				+1.7
3,420,056	+				-0.4
3,420,122	+				+1.0
3,420,122	+				+0.3
3,420,130	-				+0.9
3,420,181	-				+1.1
3,420,186	-				-1.8
3,420,186	-				+0.6
3,420,186	-				+0.5
3,420,216	-				+1.7
3,420,218	+				-0.6
3,420,218	+				+0.3
3,420,235	-				+0.9
3,420,236	-				+0.1
3,420,240	+				+1.2
3,420,253	-				-0.3
3,420,255	+				-0.7
3,420,263	-				+0.5
3,420,263	-				-0.5
3,420,263	-				+0.3
3,420,263	-				-1.8
3,420,278	+				+0.5
3,420,311	+				+0.8
3,420,311	+				+0.1
3,420,317	-				-0.2
3,420,319	-				+1.3
3,420,319	-				-0.9
3,420,332	+				-1.4
3,420,334	+		GFF3377	0.10	+0.3
3,420,334	+		GFF3377	0.10	-1.7
3,420,334	+		GFF3377	0.10	-1.5
3,420,334	+		GFF3377	0.10	+0.3
3,420,342	-		GFF3377	0.13	-1.4
3,420,342	-		GFF3377	0.13	+1.2
3,420,342	-		GFF3377	0.13	+0.1
3,420,342	-		GFF3377	0.13	+0.7
3,420,342	-		GFF3377	0.13	-0.5
3,420,351	+		GFF3377	0.16	+0.8
3,420,362	+		GFF3377	0.20	+0.3
3,420,365	-		GFF3377	0.21	+0.8
3,420,368	+		GFF3377	0.22	+0.3
3,420,370	-		GFF3377	0.22	-1.3
3,420,402	-		GFF3377	0.33	-0.4
3,420,415	+		GFF3377	0.37	-1.3
3,420,420	+		GFF3377	0.39	+1.1
3,420,425	+		GFF3377	0.40	+0.6
3,420,465	-		GFF3377	0.53	+1.1
3,420,497	+		GFF3377	0.64	-0.8
3,420,505	-		GFF3377	0.66	+1.0
3,420,505	-		GFF3377	0.66	-0.4
3,420,602	+				+0.8
3,420,602	+				+0.2
3,420,602	+				+0.5
3,420,602	+				+0.9
3,420,602	+				-0.6
3,420,602	+				-2.8
3,420,602	+				-0.2
3,420,604	+				+1.4
3,420,604	+				-0.2
3,420,605	-				+1.2
3,420,605	-				-0.9
3,420,610	-				+1.1
3,420,610	-				+0.7
3,420,610	-				+0.9
3,420,610	-				+0.4
3,420,610	-				-0.8
3,420,610	-				-1.7
3,420,610	-				-1.5
3,420,610	-				-1.4
3,420,612	-				+0.4
3,420,617	-				+0.8
3,420,649	+				+1.0
3,420,662	-				+1.1
3,420,671	+				+1.8
3,420,671	+				+0.0
3,420,676	+				+0.8
3,420,676	+				+0.9
3,420,676	+				+0.8
3,420,679	-				+0.6
3,420,680	-				+0.4
3,420,682	+				-1.0
3,420,682	-				+0.2
3,420,684	-				-0.1
3,420,684	-				+0.2
3,420,684	-				+1.6
3,420,695	-				+1.6
3,420,763	+				-0.2
3,420,765	+				+0.9
3,420,772	-				+0.4
3,420,772	-				-1.1
3,420,773	-				+0.1
3,420,775	+				-0.2
3,420,783	-				+0.4
3,420,783	-				+0.1
3,420,785	+				+0.6
3,420,785	+				-0.9
3,420,788	-				+1.1
3,420,788	-				+0.9
3,420,788	-				+0.4
3,420,790	+				-0.6
3,420,790	+				+1.8
3,420,790	+				+0.6
3,420,790	+				+1.2
3,420,790	+				+1.0
3,420,790	+				+1.6
3,420,790	+				+0.4
3,420,790	+				+0.4
3,420,790	+				+1.7
3,420,790	+				-1.4
3,420,790	+				+1.8
3,420,790	+				+0.9
3,420,790	+				+1.1
3,420,790	+				-0.9
3,420,791	+				-1.4
3,420,791	+				-0.4
3,420,798	-				-0.5
3,420,798	-				-0.3
3,420,798	-				+0.2
3,420,798	-				-0.1
3,420,798	-				+1.3
3,420,798	-				-0.3
3,420,799	-				+1.1
3,420,824	-				+1.1
3,420,856	+				+1.1
3,420,864	-		GFF3378	0.11	-0.9
3,420,987	-		GFF3378	0.50	-0.1
3,421,012	-		GFF3378	0.58	+1.1
3,421,012	-		GFF3378	0.58	+0.4
3,421,026	-		GFF3378	0.62	+1.1
3,421,026	-		GFF3378	0.62	-1.4
3,421,028	+		GFF3378	0.63	+0.9
3,421,036	-		GFF3378	0.65	+0.8
3,421,036	-		GFF3378	0.65	+0.5
3,421,059	+		GFF3378	0.72	+0.8
3,421,067	-		GFF3378	0.75	-0.7