Strain Fitness in Sphingobium sp. HT1-2 around GFF3318

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,370,094	-		GFF3317	0.40	+1.1
3,370,103	-		GFF3317	0.40	-1.0
3,370,132	+		GFF3317	0.42	+0.3
3,370,155	+		GFF3317	0.43	+1.0
3,370,165	+		GFF3317	0.44	-1.0
3,370,178	+		GFF3317	0.45	-2.0
3,370,202	-		GFF3317	0.46	+0.6
3,370,221	-		GFF3317	0.48	-1.6
3,370,224	+		GFF3317	0.48	+0.1
3,370,232	-		GFF3317	0.48	+1.4
3,370,246	+		GFF3317	0.49	+0.3
3,370,259	+		GFF3317	0.50	-2.6
3,370,264	+		GFF3317	0.50	-2.1
3,370,267	-		GFF3317	0.51	-2.3
3,370,309	+		GFF3317	0.53	-1.0
3,370,331	+		GFF3317	0.55	-0.3
3,370,339	-		GFF3317	0.55	-0.2
3,370,339	-		GFF3317	0.55	+0.6
3,370,372	+		GFF3317	0.57	+0.1
3,370,372	+		GFF3317	0.57	-0.9
3,370,384	-		GFF3317	0.58	-0.4
3,370,414	-		GFF3317	0.60	+0.3
3,370,443	+		GFF3317	0.62	-1.0
3,370,443	+		GFF3317	0.62	-1.4
3,370,443	+		GFF3317	0.62	-0.7
3,370,443	+		GFF3317	0.62	-1.3
3,370,448	+		GFF3317	0.62	-1.0
3,370,451	-		GFF3317	0.62	-1.2
3,370,470	+		GFF3317	0.63	+0.5
3,370,496	+		GFF3317	0.65	-0.1
3,370,496	+		GFF3317	0.65	-1.4
3,370,508	+		GFF3317	0.66	+0.0
3,370,513	+		GFF3317	0.66	+0.3
3,370,536	-		GFF3317	0.68	-0.9
3,370,537	-		GFF3317	0.68	-0.1
3,370,542	-		GFF3317	0.68	+0.1
3,370,560	+		GFF3317	0.69	-1.4
3,370,579	+		GFF3317	0.70	-0.6
3,370,610	+		GFF3317	0.72	-1.4
3,370,620	+		GFF3317	0.73	-0.5
3,370,628	+		GFF3317	0.73	-1.6
3,370,630	+		GFF3317	0.74	-0.0
3,370,666	+		GFF3317	0.76	-0.4
3,370,677	-		GFF3317	0.76	-0.0
3,370,683	+		GFF3317	0.77	-0.7
3,370,696	+		GFF3317	0.78	-1.3
3,370,708	+		GFF3317	0.78	+1.0
3,370,711	-		GFF3317	0.79	-0.6
3,370,711	-		GFF3317	0.79	-2.0
3,370,716	+		GFF3317	0.79	+0.3
3,370,724	-		GFF3317	0.79	-1.5
3,370,733	+		GFF3317	0.80	+0.2
3,370,733	+		GFF3317	0.80	-0.5
3,370,802	+		GFF3317	0.84	-0.6
3,370,810	-		GFF3317	0.85	-0.9
3,370,812	+		GFF3317	0.85	+1.4
3,370,824	-		GFF3317	0.86	-1.9
3,370,826	+		GFF3317	0.86	+0.6
3,370,853	+		GFF3317	0.88	-0.6
3,370,854	-		GFF3317	0.88	+0.3
3,370,854	-		GFF3317	0.88	-1.1
3,370,854	-		GFF3317	0.88	-1.3
3,370,859	+		GFF3317	0.88	-0.1
3,370,859	+		GFF3317	0.88	-0.3
3,370,859	+		GFF3317	0.88	-0.9
3,370,859	+		GFF3317	0.88	-0.5
3,370,859	+		GFF3317	0.88	-0.3
3,370,861	+		GFF3317	0.88	-0.2
3,370,867	-		GFF3317	0.89	-0.3
3,370,867	-		GFF3317	0.89	-0.4
3,370,869	-		GFF3317	0.89	-1.2
3,370,916	+				-1.1
3,370,917	+				+1.1
3,370,937	+				+1.1
3,370,945	-				+0.7
3,370,950	-				+0.6
3,370,977	+				-0.2
3,370,985	-				-0.7
3,371,026	-				-1.6
3,371,026	-				-0.6
3,371,031	+				-0.2
3,371,031	+				+0.8
3,371,031	-				-1.3
3,371,049	-				+0.4
3,371,067	+				+0.4
3,371,067	+				-0.5
3,371,067	+				+0.9
3,371,067	+				+0.6
3,371,069	+				-0.0
3,371,075	-				+0.1
3,371,075	-				+0.6
3,371,075	-				-0.9
3,371,075	-				+0.1
3,371,075	-				+0.0
3,371,075	-				+0.6
3,371,075	-				+0.5
3,371,077	-				-1.6
3,371,083	+				-1.5
3,371,097	-				-3.7
3,371,102	+				-0.7
3,371,108	+				+0.8
3,371,116	-				+1.3
3,371,140	+				-1.5
3,371,140	+				-0.9
3,371,157	+				-2.1
3,371,157	+				-0.0
3,371,157	+				-2.3
3,371,157	+				+0.8
3,371,164	+				+0.2
3,371,165	-				+0.0
3,371,165	-				-0.7
3,371,165	-				+0.3
3,371,165	-				-0.7
3,371,165	-				+0.6
3,371,183	+				+1.2
3,371,191	-				-0.4
3,371,196	-				-0.6
3,371,196	-				+1.2
3,371,210	+				+0.7
3,371,210	+				-1.4
3,371,210	-				+0.3
3,371,215	+				-1.9
3,371,218	-		GFF3318	0.10	-0.4
3,371,218	-		GFF3318	0.10	+0.3
3,371,218	-		GFF3318	0.10	-0.0
3,371,222	+		GFF3318	0.10	-1.3
3,371,222	+		GFF3318	0.10	-1.1
3,371,227	+		GFF3318	0.11	+0.7
3,371,245	-		GFF3318	0.12	-0.5
3,371,256	+		GFF3318	0.13	-0.2
3,371,261	+		GFF3318	0.14	-1.3
3,371,264	-		GFF3318	0.14	-0.6
3,371,283	+		GFF3318	0.15	-0.2
3,371,305	+		GFF3318	0.17	-2.1
3,371,332	-		GFF3318	0.19	-1.6
3,371,341	+		GFF3318	0.20	-0.5
3,371,341	+		GFF3318	0.20	+0.2
3,371,346	+		GFF3318	0.20	-1.4
3,371,346	+		GFF3318	0.20	+0.1
3,371,346	+		GFF3318	0.20	-0.3
3,371,346	+		GFF3318	0.20	+0.3
3,371,347	-		GFF3318	0.20	-0.4
3,371,349	-		GFF3318	0.21	-0.2
3,371,349	-		GFF3318	0.21	+0.1
3,371,351	+		GFF3318	0.21	-0.4
3,371,354	-		GFF3318	0.21	+0.3
3,371,354	-		GFF3318	0.21	-0.6
3,371,354	-		GFF3318	0.21	-0.8
3,371,358	+		GFF3318	0.21	+0.1
3,371,358	+		GFF3318	0.21	-0.9
3,371,358	+		GFF3318	0.21	-0.4
3,371,358	+		GFF3318	0.21	-0.5
3,371,360	-		GFF3318	0.21	-1.0
3,371,363	+		GFF3318	0.22	+0.7
3,371,366	-		GFF3318	0.22	+0.3
3,371,366	-		GFF3318	0.22	-0.2
3,371,366	-		GFF3318	0.22	-0.2
3,371,366	-		GFF3318	0.22	+1.1
3,371,366	-		GFF3318	0.22	+0.6
3,371,366	-		GFF3318	0.22	+0.0
3,371,366	-		GFF3318	0.22	-1.4
3,371,371	-		GFF3318	0.22	-0.0
3,371,388	+		GFF3318	0.24	+0.9
3,371,389	+		GFF3318	0.24	+0.5
3,371,392	-		GFF3318	0.24	+0.0
3,371,392	-		GFF3318	0.24	-1.2
3,371,394	+		GFF3318	0.24	+0.6
3,371,394	+		GFF3318	0.24	+0.9
3,371,409	-		GFF3318	0.25	-0.1
3,371,409	-		GFF3318	0.25	-0.1
3,371,409	-		GFF3318	0.25	-1.6
3,371,415	-		GFF3318	0.26	-0.0
3,371,416	+		GFF3318	0.26	+1.2
3,371,422	-		GFF3318	0.26	-0.1
3,371,424	-		GFF3318	0.27	-0.2
3,371,429	-		GFF3318	0.27	-1.7
3,371,432	+		GFF3318	0.27	+1.3
3,371,438	+		GFF3318	0.28	+0.7
3,371,438	+		GFF3318	0.28	-1.1
3,371,483	+		GFF3318	0.31	-0.1
3,371,483	+		GFF3318	0.31	+0.2
3,371,483	+		GFF3318	0.31	+0.6
3,371,486	-		GFF3318	0.31	-1.6
3,371,491	-		GFF3318	0.32	+0.2
3,371,491	-		GFF3318	0.32	+0.8
3,371,491	-		GFF3318	0.32	-0.1
3,371,491	-		GFF3318	0.32	-0.3
3,371,491	-		GFF3318	0.32	-0.2
3,371,491	-		GFF3318	0.32	-0.4
3,371,498	+		GFF3318	0.32	+0.4
3,371,501	-		GFF3318	0.33	+0.2
3,371,511	-		GFF3318	0.33	-0.1
3,371,546	+		GFF3318	0.36	+0.4
3,371,548	-		GFF3318	0.36	+0.3
3,371,560	+		GFF3318	0.37	-2.3
3,371,570	+		GFF3318	0.38	+0.7
3,371,575	+		GFF3318	0.39	-0.3
3,371,575	+		GFF3318	0.39	-1.1
3,371,578	-		GFF3318	0.39	-0.5
3,371,578	-		GFF3318	0.39	-0.6
3,371,583	-		GFF3318	0.39	-0.0
3,371,583	-		GFF3318	0.39	-0.7
3,371,583	-		GFF3318	0.39	-2.2
3,371,583	-		GFF3318	0.39	-0.1
3,371,585	+		GFF3318	0.39	-0.3
3,371,595	+		GFF3318	0.40	+0.6
3,371,595	+		GFF3318	0.40	-1.3
3,371,601	+		GFF3318	0.41	-0.5
3,371,603	-		GFF3318	0.41	+0.6
3,371,603	-		GFF3318	0.41	-0.9
3,371,603	-		GFF3318	0.41	-1.7
3,371,603	-		GFF3318	0.41	+0.3
3,371,603	-		GFF3318	0.41	+0.9
3,371,604	-		GFF3318	0.41	+0.2
3,371,609	-		GFF3318	0.41	+0.4
3,371,609	-		GFF3318	0.41	-0.1
3,371,616	+		GFF3318	0.42	-0.4
3,371,622	-		GFF3318	0.42	-2.2
3,371,622	-		GFF3318	0.42	-1.3
3,371,631	+		GFF3318	0.43	-1.3
3,371,656	+		GFF3318	0.45	+0.1
3,371,668	-		GFF3318	0.46	-1.2
3,371,706	-		GFF3318	0.49	+1.4
3,371,726	+		GFF3318	0.51	-1.4
3,371,731	+		GFF3318	0.51	+0.2
3,371,734	-		GFF3318	0.51	+0.8
3,371,734	-		GFF3318	0.51	+0.9
3,371,734	-		GFF3318	0.51	+1.3
3,371,736	+		GFF3318	0.51	+0.6
3,371,739	-		GFF3318	0.52	+1.0
3,371,741	+		GFF3318	0.52	-0.7
3,371,744	+		GFF3318	0.52	-1.5
3,371,768	+		GFF3318	0.54	-1.7
3,371,768	+		GFF3318	0.54	+0.1
3,371,768	-		GFF3318	0.54	-2.1
3,371,776	-		GFF3318	0.55	-0.7
3,371,786	-		GFF3318	0.55	-0.2
3,371,786	-		GFF3318	0.55	-0.8
3,371,798	+		GFF3318	0.56	-1.7
3,371,798	+		GFF3318	0.56	-0.4
3,371,803	+		GFF3318	0.57	+0.3
3,371,844	+		GFF3318	0.60	+1.5
3,371,850	-		GFF3318	0.61	-1.0
3,371,850	-		GFF3318	0.61	+0.3
3,371,851	+		GFF3318	0.61	-0.1
3,371,852	+		GFF3318	0.61	-2.8
3,371,867	-		GFF3318	0.62	+1.0
3,371,869	+		GFF3318	0.62	-1.6
3,371,872	+		GFF3318	0.62	+0.6
3,371,875	-		GFF3318	0.63	-0.4
3,371,882	-		GFF3318	0.63	-2.2
3,371,898	+		GFF3318	0.64	+1.1
3,371,900	+		GFF3318	0.65	-0.2
3,371,906	-		GFF3318	0.65	-1.6
3,371,920	+		GFF3318	0.66	-0.8
3,371,923	-		GFF3318	0.66	-0.7
3,371,925	+		GFF3318	0.67	+0.0
3,371,925	+		GFF3318	0.67	-0.6
3,371,925	-		GFF3318	0.67	-2.3
3,371,925	-		GFF3318	0.67	-1.1
3,371,933	-		GFF3318	0.67	-0.3
3,371,933	-		GFF3318	0.67	-1.6
3,371,933	-		GFF3318	0.67	-0.2
3,371,933	-		GFF3318	0.67	-1.0
3,371,933	-		GFF3318	0.67	-0.3
3,371,933	-		GFF3318	0.67	-1.4
3,371,936	+		GFF3318	0.67	+0.2
3,371,936	+		GFF3318	0.67	-0.7
3,371,944	-		GFF3318	0.68	+0.5
3,371,944	-		GFF3318	0.68	+0.6
3,371,967	+		GFF3318	0.70	-0.2
3,371,968	-		GFF3318	0.70	-1.4
3,371,969	+		GFF3318	0.70	-0.3
3,371,969	+		GFF3318	0.70	-0.2
3,371,974	+		GFF3318	0.71	+0.7
3,371,977	+		GFF3318	0.71	-2.0
3,371,982	-		GFF3318	0.71	-1.0
3,371,987	-		GFF3318	0.72	+0.6
3,372,002	-		GFF3318	0.73	+0.3
3,372,050	+		GFF3318	0.77	-1.7
3,372,058	-		GFF3318	0.77	+0.5
3,372,072	-		GFF3318	0.78	+0.7
3,372,074	+		GFF3318	0.78	-0.4
3,372,081	+		GFF3318	0.79	-0.2
3,372,115	+		GFF3318	0.82	-1.1
3,372,150	+		GFF3318	0.85	-1.9
3,372,155	+		GFF3318	0.85	-1.3
3,372,155	+		GFF3318	0.85	-1.9
3,372,155	+		GFF3318	0.85	+0.8
3,372,155	+		GFF3318	0.85	-0.9
3,372,155	+		GFF3318	0.85	+0.1
3,372,155	+		GFF3318	0.85	-1.3
3,372,155	+		GFF3318	0.85	-0.2
3,372,155	+		GFF3318	0.85	-1.8
3,372,155	+		GFF3318	0.85	+0.3
3,372,155	+		GFF3318	0.85	+0.3
3,372,155	+		GFF3318	0.85	-0.5
3,372,158	-		GFF3318	0.85	+1.0
3,372,163	-		GFF3318	0.86	+0.8
3,372,163	-		GFF3318	0.86	-0.3
3,372,163	-		GFF3318	0.86	+1.3
3,372,163	-		GFF3318	0.86	-1.5
3,372,163	-		GFF3318	0.86	-0.6
3,372,163	-		GFF3318	0.86	-0.5
3,372,163	-		GFF3318	0.86	+0.6
3,372,163	-		GFF3318	0.86	-1.0
3,372,163	-		GFF3318	0.86	+0.3
3,372,163	-		GFF3318	0.86	-0.7
3,372,163	-		GFF3318	0.86	-1.8
3,372,165	+		GFF3318	0.86	+0.0
3,372,168	-		GFF3318	0.86	-2.2
3,372,173	-		GFF3318	0.86	+1.2
3,372,173	-		GFF3318	0.86	+0.1
3,372,173	-		GFF3318	0.86	-1.0
3,372,173	-		GFF3318	0.86	+0.2
3,372,195	+		GFF3318	0.88	-0.8
3,372,198	+		GFF3318	0.88	-1.3
3,372,198	+		GFF3318	0.88	-1.3
3,372,198	+		GFF3318	0.88	-0.9
3,372,198	+		GFF3318	0.88	+0.0
3,372,198	+		GFF3318	0.88	-2.1
3,372,200	+		GFF3318	0.89	-0.6
3,372,200	+		GFF3318	0.89	-2.2
3,372,201	-		GFF3318	0.89	+0.5
3,372,210	+		GFF3318	0.89	-0.3
3,372,210	+		GFF3318	0.89	-1.0
3,372,213	-		GFF3318	0.90	-2.2
3,372,216	+		GFF3318	0.90	-0.8
3,372,216	+		GFF3318	0.90	+0.1
3,372,219	-				+2.3
3,372,221	+				+0.0
3,372,229	-				+0.3
3,372,229	-				+0.6
3,372,274	+				-1.3
3,372,275	+				+0.4
3,372,275	+				-2.1
3,372,275	+				+0.0
3,372,275	+				-0.2
3,372,275	+				+0.0
3,372,275	+				+0.2
3,372,275	+				-0.0
3,372,275	+				+0.0
3,372,276	-				+0.1
3,372,283	-				+0.6
3,372,283	-				+0.1
3,372,283	-				-0.3
3,372,283	-				-0.5
3,372,283	-				-1.3
3,372,303	-				-0.7
3,372,328	-				-0.6
3,372,328	-				-0.5
3,372,336	-				+0.1
3,372,338	+				+1.1
3,372,346	-				+0.6
3,372,351	+				-0.9
3,372,351	+				-0.5
3,372,351	+				-2.1
3,372,351	+				-0.8
3,372,354	-				-0.3
3,372,357	-				-2.2
3,372,373	-				+0.5
3,372,374	-				+1.1
3,372,376	+				-1.2
3,372,376	+				-0.1
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