Strain Fitness in Sphingobium sp. HT1-2 around GFF3308

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,358,789	+				+0.2
3,358,848	-		GFF3306	0.20	-0.4
3,358,897	+		GFF3306	0.30	+1.0
3,358,905	-		GFF3306	0.31	+0.7
3,358,941	+		GFF3306	0.38	-0.2
3,358,941	+		GFF3306	0.38	-0.7
3,358,944	-		GFF3306	0.38	-1.4
3,358,971	+		GFF3306	0.43	-0.6
3,358,974	-		GFF3306	0.44	-0.4
3,358,981	-		GFF3306	0.45	+1.6
3,358,992	+		GFF3306	0.47	-0.3
3,359,015	-		GFF3306	0.52	-0.1
3,359,027	+		GFF3306	0.54	+0.3
3,359,036	-		GFF3306	0.55	-1.1
3,359,036	-		GFF3306	0.55	-1.0
3,359,036	-		GFF3306	0.55	+1.2
3,359,040	+		GFF3306	0.56	-0.9
3,359,118	-		GFF3306	0.71	-0.7
3,359,130	+		GFF3306	0.73	-1.0
3,359,154	-		GFF3306	0.77	+0.7
3,359,168	-		GFF3306	0.80	-0.2
3,359,184	+		GFF3306	0.83	+0.8
3,359,188	+		GFF3306	0.84	-0.1
3,359,217	-		GFF3306	0.89	+1.2
3,359,234	-				+0.4
3,359,266	+				-0.2
3,359,269	-				+0.1
3,359,269	-				-0.4
3,359,312	-				-0.5
3,359,312	-				-0.5
3,359,349	+		GFF3307	0.17	+0.1
3,359,349	+		GFF3307	0.17	-2.5
3,359,357	-		GFF3307	0.19	-0.7
3,359,357	-		GFF3307	0.19	-1.2
3,359,357	-		GFF3307	0.19	+1.4
3,359,388	+		GFF3307	0.26	+0.7
3,359,421	+		GFF3307	0.34	-1.1
3,359,483	+		GFF3307	0.49	-1.3
3,359,521	+		GFF3307	0.58	-1.2
3,359,581	+		GFF3307	0.73	+0.7
3,359,601	+		GFF3307	0.78	-0.4
3,359,602	-		GFF3307	0.78	+1.6
3,359,607	-		GFF3307	0.79	+0.7
3,359,609	-		GFF3307	0.80	-0.3
3,359,650	+		GFF3307	0.90	-0.7
3,359,650	+		GFF3307	0.90	+0.3
3,359,662	-				+0.5
3,359,702	-				+0.6
3,359,709	-				-0.2
3,359,709	-				-0.1
3,359,740	+				+0.1
3,359,743	-				+0.7
3,359,748	-				-2.0
3,359,760	+				-0.4
3,359,760	+				-0.6
3,359,760	+				-1.8
3,359,760	+				-0.3
3,359,760	+				+0.6
3,359,760	+				-1.3
3,359,768	-				+0.2
3,359,768	-				+0.3
3,359,768	-				-0.4
3,359,768	-				+0.4
3,359,798	+				+1.1
3,359,823	+				-1.0
3,359,846	-				-0.1
3,359,872	+				+0.3
3,359,887	+				+0.1
3,359,887	+				-1.8
3,359,906	+				-0.9
3,359,906	+				+1.1
3,359,914	-				+0.6
3,359,914	-				+0.8
3,359,914	-				-1.5
3,359,914	-				+0.3
3,359,931	+				+0.4
3,359,931	+				-0.0
3,359,957	+				+0.3
3,359,957	+				-0.6
3,359,965	-				-0.9
3,359,965	-				+0.5
3,359,965	-				+0.2
3,359,977	+				+0.2
3,359,990	+		GFF3308	0.11	-1.6
3,359,993	-		GFF3308	0.11	+0.0
3,360,025	+		GFF3308	0.12	+0.5
3,360,025	+		GFF3308	0.12	+0.3
3,360,027	-		GFF3308	0.12	-1.3
3,360,033	-		GFF3308	0.13	-2.6
3,360,033	-		GFF3308	0.13	+0.6
3,360,038	-		GFF3308	0.13	-0.4
3,360,141	-		GFF3308	0.18	-0.1
3,360,202	+		GFF3308	0.20	-2.0
3,360,202	+		GFF3308	0.20	-0.1
3,360,217	+		GFF3308	0.21	-1.7
3,360,225	-		GFF3308	0.21	-0.1
3,360,244	-		GFF3308	0.22	+0.4
3,360,258	-		GFF3308	0.23	-1.5
3,360,268	-		GFF3308	0.23	-0.2
3,360,268	-		GFF3308	0.23	+0.7
3,360,273	+		GFF3308	0.24	+1.0
3,360,273	-		GFF3308	0.24	-1.1
3,360,278	-		GFF3308	0.24	+0.0
3,360,278	-		GFF3308	0.24	+0.0
3,360,281	-		GFF3308	0.24	-0.3
3,360,329	+		GFF3308	0.26	+2.6
3,360,329	+		GFF3308	0.26	+2.1
3,360,329	+		GFF3308	0.26	+0.4
3,360,331	+		GFF3308	0.26	-0.9
3,360,331	+		GFF3308	0.26	-1.9
3,360,346	+		GFF3308	0.27	-1.6
3,360,346	+		GFF3308	0.27	+1.4
3,360,346	+		GFF3308	0.27	+1.4
3,360,346	+		GFF3308	0.27	+0.1
3,360,354	-		GFF3308	0.27	-0.4
3,360,404	+		GFF3308	0.30	-0.0
3,360,412	-		GFF3308	0.30	+1.4
3,360,414	+		GFF3308	0.30	-0.6
3,360,414	+		GFF3308	0.30	-1.4
3,360,414	+		GFF3308	0.30	-0.8
3,360,414	+		GFF3308	0.30	-0.1
3,360,422	-		GFF3308	0.31	-0.6
3,360,424	+		GFF3308	0.31	-0.4
3,360,427	-		GFF3308	0.31	+0.6
3,360,427	-		GFF3308	0.31	+1.1
3,360,427	-		GFF3308	0.31	-0.3
3,360,432	-		GFF3308	0.31	+0.6
3,360,462	-		GFF3308	0.32	+1.1
3,360,496	-		GFF3308	0.34	+0.8
3,360,506	-		GFF3308	0.34	+1.8
3,360,534	+		GFF3308	0.36	+1.3
3,360,590	-		GFF3308	0.38	-0.6
3,360,605	+		GFF3308	0.39	-0.7
3,360,613	-		GFF3308	0.39	+1.0
3,360,613	-		GFF3308	0.39	-1.0
3,360,618	+		GFF3308	0.40	+0.5
3,360,628	+		GFF3308	0.40	-1.4
3,360,628	+		GFF3308	0.40	+1.5
3,360,636	-		GFF3308	0.40	-0.2
3,360,636	-		GFF3308	0.40	-0.4
3,360,709	-		GFF3308	0.44	-0.4
3,360,732	+		GFF3308	0.45	+1.0
3,360,773	+		GFF3308	0.47	+0.6
3,360,776	-		GFF3308	0.47	-0.5
3,360,776	-		GFF3308	0.47	+0.4
3,360,783	+		GFF3308	0.47	+1.2
3,360,783	+		GFF3308	0.47	-0.2
3,360,798	+		GFF3308	0.48	-0.2
3,360,811	+		GFF3308	0.48	-0.0
3,360,819	-		GFF3308	0.49	-1.1
3,360,819	-		GFF3308	0.49	+0.6
3,360,821	+		GFF3308	0.49	-1.7
3,360,945	-		GFF3308	0.55	-0.4
3,360,967	-		GFF3308	0.56	+0.5
3,360,988	-		GFF3308	0.57	-0.2
3,360,995	+		GFF3308	0.57	-1.8
3,360,995	+		GFF3308	0.57	+0.0
3,360,995	+		GFF3308	0.57	+0.3
3,360,995	+		GFF3308	0.57	-0.9
3,360,995	+		GFF3308	0.57	+0.2
3,361,003	-		GFF3308	0.57	-1.0
3,361,003	-		GFF3308	0.57	-0.3
3,361,003	-		GFF3308	0.57	-0.0
3,361,003	-		GFF3308	0.57	-1.3
3,361,009	-		GFF3308	0.58	-0.7
3,361,050	-		GFF3308	0.60	-0.7
3,361,069	+		GFF3308	0.60	+0.1
3,361,069	+		GFF3308	0.60	-0.9
3,361,069	+		GFF3308	0.60	+0.7
3,361,069	+		GFF3308	0.60	-1.1
3,361,069	+		GFF3308	0.60	-0.3
3,361,069	+		GFF3308	0.60	+0.1
3,361,069	+		GFF3308	0.60	-0.5
3,361,069	+		GFF3308	0.60	-0.3
3,361,077	-		GFF3308	0.61	+0.1
3,361,077	-		GFF3308	0.61	-0.8
3,361,077	-		GFF3308	0.61	-0.2
3,361,141	+		GFF3308	0.64	+1.6
3,361,142	+		GFF3308	0.64	+1.7
3,361,149	-		GFF3308	0.64	-0.3
3,361,179	+		GFF3308	0.66	+1.0
3,361,182	-		GFF3308	0.66	+0.3
3,361,212	+		GFF3308	0.67	-0.7
3,361,234	+		GFF3308	0.68	-0.2
3,361,237	-		GFF3308	0.68	+0.6
3,361,242	-		GFF3308	0.68	-1.2
3,361,242	-		GFF3308	0.68	-3.0
3,361,263	+		GFF3308	0.69	-0.2
3,361,263	+		GFF3308	0.69	-1.9
3,361,263	+		GFF3308	0.69	+0.8
3,361,263	+		GFF3308	0.69	-0.6
3,361,294	-		GFF3308	0.71	+0.4
3,361,298	+		GFF3308	0.71	-0.1
3,361,306	+		GFF3308	0.71	+0.3
3,361,306	-		GFF3308	0.71	+1.1
3,361,306	-		GFF3308	0.71	+0.4
3,361,338	+		GFF3308	0.73	+1.5
3,361,353	-		GFF3308	0.74	-1.0
3,361,361	+		GFF3308	0.74	-0.2
3,361,361	+		GFF3308	0.74	-1.0
3,361,361	+		GFF3308	0.74	+0.8
3,361,369	-		GFF3308	0.74	-0.3
3,361,369	-		GFF3308	0.74	-2.9
3,361,369	-		GFF3308	0.74	+0.4
3,361,369	-		GFF3308	0.74	-0.2
3,361,375	-		GFF3308	0.75	-1.4
3,361,382	-		GFF3308	0.75	-2.3
3,361,421	+		GFF3308	0.77	+1.1
3,361,426	+		GFF3308	0.77	-1.5
3,361,431	+		GFF3308	0.77	-0.5
3,361,449	+		GFF3308	0.78	-1.3
3,361,449	+		GFF3308	0.78	-0.9
3,361,457	-		GFF3308	0.78	-0.3
3,361,457	-		GFF3308	0.78	+1.2
3,361,457	-		GFF3308	0.78	-0.3
3,361,457	-		GFF3308	0.78	-1.0
3,361,496	+		GFF3308	0.80	+0.9
3,361,501	+		GFF3308	0.80	+0.8
3,361,509	-		GFF3308	0.81	-1.0
3,361,509	-		GFF3308	0.81	-0.2
3,361,509	-		GFF3308	0.81	-0.3
3,361,535	+		GFF3308	0.82	+0.9
3,361,565	+		GFF3308	0.83	+0.7
3,361,565	+		GFF3308	0.83	-1.0
3,361,565	+		GFF3308	0.83	-1.6
3,361,565	+		GFF3308	0.83	+0.8
3,361,571	-		GFF3308	0.84	+0.2
3,361,578	-		GFF3308	0.84	+0.9
3,361,580	+		GFF3308	0.84	-2.5
3,361,580	+		GFF3308	0.84	-0.5
3,361,588	-		GFF3308	0.84	+0.1
3,361,593	-		GFF3308	0.85	-0.0
3,361,593	-		GFF3308	0.85	-1.2
3,361,598	+		GFF3308	0.85	+1.7
3,361,599	+		GFF3308	0.85	-1.9
3,361,599	+		GFF3308	0.85	-0.9
3,361,599	+		GFF3308	0.85	+0.4
3,361,604	+		GFF3308	0.85	+0.4
3,361,604	+		GFF3308	0.85	-1.2
3,361,606	-		GFF3308	0.85	-0.7
3,361,607	-		GFF3308	0.85	-0.1
3,361,607	-		GFF3308	0.85	+0.0
3,361,607	-		GFF3308	0.85	-2.4
3,361,617	-		GFF3308	0.86	-2.0
3,361,617	-		GFF3308	0.86	+0.2
3,361,617	-		GFF3308	0.86	+2.0
3,361,617	-		GFF3308	0.86	+0.4
3,361,632	+		GFF3308	0.86	-0.4
3,361,634	-		GFF3308	0.87	+0.8
3,361,641	-		GFF3308	0.87	+0.2
3,361,654	+		GFF3308	0.87	-1.3
3,361,662	-		GFF3308	0.88	+0.2
3,361,690	-		GFF3308	0.89	-1.5
3,361,718	-				+0.6
3,361,731	+				+0.9
3,361,737	-				+0.4
3,361,757	+				+0.9
3,361,774	-				+0.4
3,361,796	-				-1.3
3,361,869	+				+0.0
3,361,877	-				+0.8
3,361,887	-				+0.3
3,361,898	+				-0.4
3,361,898	+				+0.3
3,361,898	+				+0.0
3,361,916	-				-0.7
3,361,916	-				+0.9
3,361,956	-				+0.5
3,362,644	-				+0.3
3,362,644	-				-2.0
3,362,644	-				-1.4
3,362,644	-				+0.1
3,362,644	-				-2.2
3,362,644	-				+0.2
3,362,644	-				-0.7
3,362,644	-				-1.2
3,362,644	-				+1.2
3,362,644	-				+0.3
3,362,644	-				-0.3
3,362,644	-				-1.2
3,362,644	-				+0.5
3,362,644	-				-1.3
3,362,644	-				+0.5
3,362,644	-				-0.4
3,362,666	-				-0.5
3,362,666	-				+0.1
3,362,691	-				+1.1
3,362,811	+				-1.3
3,362,817	+				+0.6
3,362,819	-				-0.6
3,362,819	-				+1.0
3,362,824	+				-1.6
3,362,861	+				+0.2
3,362,902	+				+0.6
3,362,903	+				-0.7
3,362,905	-		GFF3311	0.10	-0.6
3,362,921	+		GFF3311	0.13	+0.1
3,362,921	+		GFF3311	0.13	+0.1