Strain Fitness in Sphingobium sp. HT1-2 around GFF3272

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,323,995	+		GFF3270	0.34	-2.3
3,323,995	+		GFF3270	0.34	-0.6
3,323,995	+		GFF3270	0.34	+0.4
3,324,003	-		GFF3270	0.35	-0.5
3,324,003	-		GFF3270	0.35	+0.0
3,324,005	+		GFF3270	0.36	+0.1
3,324,005	+		GFF3270	0.36	-1.8
3,324,005	+		GFF3270	0.36	-0.7
3,324,005	+		GFF3270	0.36	+0.4
3,324,011	-		GFF3270	0.36	-0.9
3,324,012	+		GFF3270	0.36	-1.1
3,324,013	-		GFF3270	0.36	+2.0
3,324,013	-		GFF3270	0.36	+0.0
3,324,013	-		GFF3270	0.36	-0.8
3,324,020	-		GFF3270	0.37	+0.0
3,324,027	-		GFF3270	0.38	-0.8
3,324,051	+		GFF3270	0.40	-0.6
3,324,078	+		GFF3270	0.43	+0.2
3,324,078	+		GFF3270	0.43	+0.0
3,324,078	+		GFF3270	0.43	-0.9
3,324,086	-		GFF3270	0.44	-1.4
3,324,086	-		GFF3270	0.44	-1.6
3,324,091	-		GFF3270	0.44	-2.6
3,324,108	+		GFF3270	0.46	-0.6
3,324,128	+		GFF3270	0.48	+0.3
3,324,143	+		GFF3270	0.50	-0.3
3,324,151	-		GFF3270	0.51	-0.4
3,324,182	-		GFF3270	0.54	-0.4
3,324,196	-		GFF3270	0.55	+0.4
3,324,259	+		GFF3270	0.62	+0.4
3,324,269	-		GFF3270	0.63	+0.2
3,324,279	-		GFF3270	0.64	-0.4
3,324,281	+		GFF3270	0.64	+1.4
3,324,284	-		GFF3270	0.64	+0.7
3,324,284	-		GFF3270	0.64	+0.6
3,324,284	-		GFF3270	0.64	+0.7
3,324,286	+		GFF3270	0.64	-1.5
3,324,294	-		GFF3270	0.65	+1.0
3,324,294	-		GFF3270	0.65	+0.9
3,324,296	-		GFF3270	0.66	+0.2
3,324,306	-		GFF3270	0.67	-0.1
3,324,319	+		GFF3270	0.68	-0.1
3,324,327	-		GFF3270	0.69	-1.7
3,324,327	-		GFF3270	0.69	-1.3
3,324,329	+		GFF3270	0.69	-0.2
3,324,330	+		GFF3270	0.69	-0.5
3,324,354	-		GFF3270	0.72	-0.8
3,324,354	-		GFF3270	0.72	+0.9
3,324,365	+		GFF3270	0.73	-0.5
3,324,385	-		GFF3270	0.75	-1.4
3,324,398	+		GFF3270	0.76	+0.7
3,324,398	+		GFF3270	0.76	-1.6
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	-2.3
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	+0.7
3,324,398	+		GFF3270	0.76	-2.0
3,324,398	+		GFF3270	0.76	+0.8
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	+0.2
3,324,398	+		GFF3270	0.76	-0.0
3,324,398	+		GFF3270	0.76	+0.4
3,324,398	+		GFF3270	0.76	-1.1
3,324,398	+		GFF3270	0.76	-1.7
3,324,398	+		GFF3270	0.76	-0.2
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	-1.0
3,324,398	+		GFF3270	0.76	-1.2
3,324,398	+		GFF3270	0.76	+1.0
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	+0.0
3,324,398	+		GFF3270	0.76	-0.1
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	-0.3
3,324,398	+		GFF3270	0.76	+0.9
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	+1.7
3,324,398	+		GFF3270	0.76	+1.1
3,324,398	+		GFF3270	0.76	-0.3
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	+0.2
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	-0.3
3,324,398	+		GFF3270	0.76	-2.7
3,324,398	+		GFF3270	0.76	+0.1
3,324,398	+		GFF3270	0.76	-1.2
3,324,398	+		GFF3270	0.76	-2.0
3,324,401	-		GFF3270	0.76	-0.2
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	-1.8
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	-1.0
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-1.1
3,324,406	-		GFF3270	0.77	+1.4
3,324,406	-		GFF3270	0.77	+1.2
3,324,406	-		GFF3270	0.77	-0.6
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	+0.0
3,324,406	-		GFF3270	0.77	-0.1
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	+1.2
3,324,406	-		GFF3270	0.77	+1.7
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	+1.0
3,324,406	-		GFF3270	0.77	+0.0
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	-3.2
3,324,406	-		GFF3270	0.77	+0.9
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	+0.8
3,324,406	-		GFF3270	0.77	-0.9
3,324,406	-		GFF3270	0.77	-1.0
3,324,406	-		GFF3270	0.77	-0.9
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	-1.7
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	-0.4
3,324,412	+		GFF3270	0.78	-0.5
3,324,414	+		GFF3270	0.78	-1.5
3,324,422	-		GFF3270	0.79	-2.0
3,324,422	-		GFF3270	0.79	-1.0
3,324,431	+		GFF3270	0.79	-2.0
3,324,431	+		GFF3270	0.79	+0.3
3,324,431	+		GFF3270	0.79	-0.3
3,324,431	+		GFF3270	0.79	-1.5
3,324,439	-		GFF3270	0.80	-2.1
3,324,479	-		GFF3270	0.84	+0.3
3,324,481	-		GFF3270	0.85	-1.4
3,324,481	-		GFF3270	0.85	+0.5
3,324,488	+		GFF3270	0.85	+0.3
3,324,488	+		GFF3270	0.85	-0.7
3,324,488	+		GFF3270	0.85	-0.0
3,324,488	+		GFF3270	0.85	-1.3
3,324,488	+		GFF3270	0.85	-1.8
3,324,488	+		GFF3270	0.85	+0.0
3,324,488	+		GFF3270	0.85	-0.5
3,324,488	+		GFF3270	0.85	-1.0
3,324,488	+		GFF3270	0.85	-1.3
3,324,490	+		GFF3270	0.86	+1.1
3,324,496	-		GFF3270	0.86	-2.0
3,324,496	-		GFF3270	0.86	-0.4
3,324,496	-		GFF3270	0.86	+0.7
3,324,496	-		GFF3270	0.86	-1.1
3,324,496	-		GFF3270	0.86	+0.3
3,324,496	-		GFF3270	0.86	-0.1
3,324,496	-		GFF3270	0.86	-0.2
3,324,498	-		GFF3270	0.86	-1.6
3,324,498	-		GFF3270	0.86	-0.7
3,324,521	+		GFF3270	0.89	-0.5
3,324,545	-				-1.7
3,324,555	+				+0.4
3,324,558	-				+0.2
3,324,560	+				+0.1
3,324,560	+				-0.2
3,324,560	+				+0.3
3,324,560	+				+0.8
3,324,568	-				+0.6
3,324,568	-				-2.0
3,324,568	-				-0.5
3,324,568	-				-1.6
3,324,594	-				-0.3
3,324,607	+				+0.1
3,324,607	+				-1.2
3,324,607	+				-0.4
3,324,607	+				-0.3
3,324,609	-				-0.3
3,324,615	-				-0.0
3,324,615	-				+0.2
3,324,615	-				-0.9
3,324,615	-				-0.1
3,324,615	-				-1.6
3,324,615	-				-0.1
3,324,695	+		GFF3271	0.21	-0.0
3,324,749	-		GFF3271	0.38	-0.8
3,324,759	-		GFF3271	0.41	-0.6
3,324,759	-		GFF3271	0.41	-2.3
3,324,808	+		GFF3271	0.56	-1.9
3,324,808	+		GFF3271	0.56	-1.7
3,324,813	-		GFF3271	0.58	+1.1
3,324,835	+		GFF3271	0.65	-1.3
3,324,837	+		GFF3271	0.65	-0.5
3,324,837	+		GFF3271	0.65	+0.7
3,324,845	-		GFF3271	0.68	+0.0
3,324,845	-		GFF3271	0.68	-1.5
3,324,858	+		GFF3271	0.72	-1.6
3,324,867	+		GFF3271	0.75	-0.3
3,324,867	+		GFF3271	0.75	-1.4
3,324,867	+		GFF3271	0.75	+1.4
3,324,867	+		GFF3271	0.75	-0.5
3,324,875	-		GFF3271	0.77	+0.3
3,324,875	-		GFF3271	0.77	+0.4
3,324,875	-		GFF3271	0.77	-1.3
3,324,875	-		GFF3271	0.77	-1.8
3,324,885	+		GFF3271	0.81	-2.2
3,324,887	-		GFF3271	0.81	-0.8
3,324,900	-		GFF3271	0.85	-1.0
3,324,905	-		GFF3271	0.87	+0.8
3,324,919	+				-0.7
3,324,919	+				-2.3
3,324,919	+				+0.7
3,324,919	+				-0.4
3,324,919	+				-0.5
3,324,919	+				-1.9
3,324,919	+				-0.0
3,324,919	+				+0.6
3,324,927	-				+0.3
3,324,927	-				-0.8
3,324,927	-				+0.9
3,324,927	-				-0.1
3,324,927	-				-0.8
3,324,927	-				-0.1
3,324,927	-				-0.4
3,324,929	+				-1.1
3,324,929	+				-1.5
3,324,929	+				-0.7
3,324,937	-				-0.5
3,324,937	-				-1.5
3,324,937	-				-0.5
3,324,953	+				-1.6
3,324,953	+				-0.2
3,324,961	-				+0.4
3,325,002	-				-0.2
3,325,004	-				-1.1
3,325,004	-				-0.0
3,325,007	+				-1.3
3,325,033	+				+1.0
3,325,059	+				+1.1
3,325,059	+				-1.4
3,325,059	+				-0.3
3,325,059	+				+0.4
3,325,059	+				-0.3
3,325,059	+				-0.4
3,325,059	+				+0.5
3,325,059	+				-1.3
3,325,062	+				-0.3
3,325,067	-				-0.6
3,325,067	-				+0.7
3,325,067	-				+0.5
3,325,067	-				-0.1
3,325,067	-				-0.7
3,325,067	-				-1.1
3,325,067	-				-1.5
3,325,078	-				-1.4
3,325,115	+		GFF3272	0.10	-0.4
3,325,115	+		GFF3272	0.10	-1.0
3,325,115	+		GFF3272	0.10	-2.1
3,325,120	+		GFF3272	0.10	+0.5
3,325,125	+		GFF3272	0.11	+0.4
3,325,125	+		GFF3272	0.11	+0.5
3,325,133	-		GFF3272	0.11	+1.1
3,325,160	+		GFF3272	0.13	-0.5
3,325,160	+		GFF3272	0.13	-0.9
3,325,160	+		GFF3272	0.13	+0.5
3,325,168	-		GFF3272	0.14	+0.6
3,325,168	-		GFF3272	0.14	-0.1
3,325,169	-		GFF3272	0.14	-1.8
3,325,173	-		GFF3272	0.14	-0.3
3,325,191	+		GFF3272	0.16	+1.5
3,325,212	+		GFF3272	0.17	+0.7
3,325,214	+		GFF3272	0.18	-0.2
3,325,222	-		GFF3272	0.18	+0.8
3,325,257	-		GFF3272	0.21	-1.5
3,325,264	-		GFF3272	0.21	-0.2
3,325,266	+		GFF3272	0.22	-1.2
3,325,266	+		GFF3272	0.22	-0.2
3,325,266	+		GFF3272	0.22	-1.3
3,325,266	+		GFF3272	0.22	+0.3
3,325,266	+		GFF3272	0.22	+0.9
3,325,272	-		GFF3272	0.22	+0.7
3,325,274	-		GFF3272	0.22	+0.5
3,325,274	-		GFF3272	0.22	-2.2
3,325,278	+		GFF3272	0.22	-1.9
3,325,278	+		GFF3272	0.22	-1.7
3,325,283	+		GFF3272	0.23	-0.7
3,325,283	+		GFF3272	0.23	-2.0
3,325,286	-		GFF3272	0.23	-0.4
3,325,340	-		GFF3272	0.27	-2.1
3,325,351	-		GFF3272	0.28	-0.0
3,325,363	+		GFF3272	0.29	-2.9
3,325,367	+		GFF3272	0.29	-0.7
3,325,379	+		GFF3272	0.30	-1.0
3,325,387	-		GFF3272	0.31	-1.4
3,325,387	-		GFF3272	0.31	-1.5
3,325,391	+		GFF3272	0.31	-0.6
3,325,392	-		GFF3272	0.31	-0.0
3,325,394	-		GFF3272	0.31	+0.2
3,325,396	+		GFF3272	0.31	-1.4
3,325,399	-		GFF3272	0.32	+0.3
3,325,401	+		GFF3272	0.32	-0.6
3,325,401	-		GFF3272	0.32	-0.6
3,325,404	-		GFF3272	0.32	-1.6
3,325,404	-		GFF3272	0.32	+0.8
3,325,428	-		GFF3272	0.34	-0.3
3,325,428	-		GFF3272	0.34	-2.1
3,325,428	-		GFF3272	0.34	+0.4
3,325,443	+		GFF3272	0.35	-1.1
3,325,451	-		GFF3272	0.36	-1.3
3,325,458	+		GFF3272	0.36	-1.4
3,325,458	+		GFF3272	0.36	-0.5
3,325,466	-		GFF3272	0.37	+0.6
3,325,466	-		GFF3272	0.37	-1.6
3,325,491	+		GFF3272	0.39	-1.6
3,325,491	+		GFF3272	0.39	-1.6
3,325,492	+		GFF3272	0.39	-0.7
3,325,496	+		GFF3272	0.39	+0.4
3,325,496	+		GFF3272	0.39	-0.3
3,325,496	+		GFF3272	0.39	-1.6
3,325,496	+		GFF3272	0.39	-2.2
3,325,498	+		GFF3272	0.39	-0.4
3,325,499	-		GFF3272	0.39	-1.5
3,325,499	-		GFF3272	0.39	-2.0
3,325,504	-		GFF3272	0.40	-1.9
3,325,504	-		GFF3272	0.40	+1.5
3,325,522	+		GFF3272	0.41	+0.2
3,325,522	+		GFF3272	0.41	-0.6
3,325,522	+		GFF3272	0.41	+0.4
3,325,522	+		GFF3272	0.41	-0.1
3,325,522	+		GFF3272	0.41	+0.1
3,325,530	-		GFF3272	0.42	+0.2
3,325,542	+		GFF3272	0.43	-0.2
3,325,559	+		GFF3272	0.44	+0.4
3,325,620	+		GFF3272	0.49	-0.8
3,325,624	+		GFF3272	0.49	+0.8
3,325,628	-		GFF3272	0.49	-1.8
3,325,634	+		GFF3272	0.50	-0.6
3,325,647	-		GFF3272	0.51	-2.4
3,325,647	-		GFF3272	0.51	-0.9
3,325,647	-		GFF3272	0.51	+0.6
3,325,662	+		GFF3272	0.52	+0.3
3,325,662	+		GFF3272	0.52	+1.1
3,325,662	+		GFF3272	0.52	-0.5
3,325,662	+		GFF3272	0.52	-1.4
3,325,662	+		GFF3272	0.52	+0.6
3,325,662	+		GFF3272	0.52	-0.1
3,325,662	+		GFF3272	0.52	-0.0
3,325,670	-		GFF3272	0.52	+0.1
3,325,670	-		GFF3272	0.52	-1.8
3,325,670	-		GFF3272	0.52	-0.7
3,325,670	-		GFF3272	0.52	-0.9
3,325,670	-		GFF3272	0.52	+0.1
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3,325,715	-		GFF3272	0.56	-1.9
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3,325,976	-		GFF3272	0.76	-2.1
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3,326,025	+		GFF3272	0.79	-0.2
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3,326,104	-		GFF3272	0.85	-2.4
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3,326,169	+				-0.2
3,326,177	+				-0.5
3,326,177	+				+0.5
3,326,177	+				+0.6
3,326,177	+				+0.2
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3,326,185	-				+0.8
3,326,185	-				-0.2
3,326,192	+				-0.4
3,326,192	-				-0.3
3,326,205	-				-1.3
3,326,205	-				-1.5
3,326,210	+				-0.5
3,326,222	+				-1.1
3,326,232	+				-0.6
3,326,238	+				-1.5
3,326,243	+				+0.2
3,326,251	-				-0.3
3,326,251	-				-0.3
3,326,295	+				-0.2
3,326,295	+				-0.1
3,326,295	+				-0.7
3,326,302	+				+0.2
3,326,304	-				+0.4
3,326,310	+				-0.7
3,326,310	+				-0.7
3,326,310	+				+0.3
3,326,311	+				+0.3
3,326,311	-				+0.0
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3,326,318	-				+1.1
3,326,318	-				-1.3
3,326,325	-				-1.7
3,326,325	-				-0.3
3,326,338	+				+0.1
3,326,338	+				-0.2
3,326,344	+				-1.0
3,326,344	+				-0.6
3,326,346	-				+1.4
3,326,346	-				+0.1
3,326,346	-				-0.4
3,326,346	-				-0.7
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3,326,369	-				-0.5
3,326,373	+				-0.7
3,326,373	+				+1.0
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3,326,388	+				-1.4
3,326,388	+				+0.0
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3,326,585	+		GFF3273	0.49	-2.4
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3,326,841	+				-2.2
3,326,859	-				-1.5
3,326,869	+				-0.9
3,326,874	+				-1.3
3,326,874	+				-1.1
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3,326,916	+				+0.3