Strain Fitness in Sphingobium sp. HT1-2 around GFF3231

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,284,891	+		GFF3229	0.48	-0.1
3,284,901	+		GFF3229	0.52	+1.0
3,284,901	+		GFF3229	0.52	+0.4
3,284,906	+		GFF3229	0.54	+0.0
3,284,951	+		GFF3229	0.70	+0.8
3,284,977	+		GFF3229	0.79	-1.3
3,284,993	+		GFF3229	0.84	+1.0
3,285,007	-		GFF3229	0.89	+0.2
3,285,007	-		GFF3229	0.89	-1.8
3,285,013	+				+0.6
3,285,013	+				-1.8
3,285,013	+				+0.1
3,285,013	+				-0.0
3,285,013	+				+0.5
3,285,026	-				+0.2
3,285,061	-				-0.3
3,285,061	-				-0.3
3,285,061	-				-1.1
3,285,063	+				+1.1
3,285,071	-				-0.0
3,285,074	+				-0.0
3,285,087	+				-0.3
3,285,177	+				+0.3
3,285,306	+				-1.1
3,285,306	+				-1.1
3,285,311	+				-1.8
3,285,412	+				-0.5
3,285,510	+				+0.3
3,285,518	-				+0.1
3,285,518	-				+1.7
3,285,519	+				+0.3
3,285,526	+				+0.9
3,285,536	-				+0.5
3,285,542	+				+1.4
3,285,566	+				+0.6
3,285,566	+				+0.4
3,285,571	+				-1.5
3,285,576	+				-0.5
3,285,576	+				-1.3
3,285,576	+				+0.7
3,285,576	+				+0.3
3,285,576	+				+1.6
3,285,576	+				-0.2
3,285,576	+				+0.9
3,285,576	+				-0.1
3,285,576	+				-0.4
3,285,576	+				+0.1
3,285,576	+				+1.1
3,285,576	+				-0.6
3,285,576	+				-0.4
3,285,579	-				-1.8
3,285,584	-				+0.3
3,285,584	-				+0.4
3,285,602	-				-0.2
3,285,602	-				-0.7
3,285,628	+		GFF3230	0.10	-0.7
3,285,630	+		GFF3230	0.11	+1.4
3,285,636	-		GFF3230	0.14	+0.3
3,285,636	-		GFF3230	0.14	-2.3
3,285,653	-		GFF3230	0.21	-0.3
3,285,655	+		GFF3230	0.22	-1.1
3,285,660	+		GFF3230	0.24	-0.5
3,285,668	-		GFF3230	0.28	+1.4
3,285,714	-		GFF3230	0.48	+0.7
3,285,716	+		GFF3230	0.49	-0.5
3,285,734	+		GFF3230	0.57	-0.8
3,285,740	-		GFF3230	0.59	-0.0
3,285,748	+		GFF3230	0.63	+1.6
3,285,756	-		GFF3230	0.66	-0.4
3,285,763	+		GFF3230	0.69	-3.2
3,285,779	-		GFF3230	0.76	-0.8
3,285,781	-		GFF3230	0.77	-1.2
3,285,854	+				-0.5
3,285,888	-				-0.2
3,285,890	-				+0.5
3,285,892	-				+1.4
3,285,892	-				-0.0
3,285,896	-				+0.3
3,285,903	+				-0.4
3,285,947	-				+0.4
3,285,948	+				+0.6
3,285,956	-				+0.4
3,285,961	+				+2.0
3,285,973	+		GFF3231	0.11	+0.8
3,285,981	-		GFF3231	0.12	-1.2
3,285,981	-		GFF3231	0.12	+0.0
3,285,988	+		GFF3231	0.13	-1.4
3,286,008	+		GFF3231	0.16	+1.2
3,286,008	+		GFF3231	0.16	+0.7
3,286,008	+		GFF3231	0.16	+0.7
3,286,008	+		GFF3231	0.16	-0.7
3,286,008	+		GFF3231	0.16	-0.2
3,286,008	+		GFF3231	0.16	-0.0
3,286,008	+		GFF3231	0.16	+0.3
3,286,008	+		GFF3231	0.16	-0.9
3,286,008	+		GFF3231	0.16	+1.8
3,286,009	+		GFF3231	0.16	-0.3
3,286,009	+		GFF3231	0.16	+1.2
3,286,009	+		GFF3231	0.16	-1.1
3,286,009	+		GFF3231	0.16	+0.1
3,286,016	-		GFF3231	0.16	+0.6
3,286,017	-		GFF3231	0.17	+0.0
3,286,017	-		GFF3231	0.17	-1.2
3,286,017	-		GFF3231	0.17	+0.9
3,286,027	-		GFF3231	0.18	-0.0
3,286,050	+		GFF3231	0.21	-1.2
3,286,058	-		GFF3231	0.22	-0.0
3,286,058	-		GFF3231	0.22	+0.7
3,286,058	-		GFF3231	0.22	+1.0
3,286,058	-		GFF3231	0.22	-0.9
3,286,113	+		GFF3231	0.28	-1.4
3,286,121	-		GFF3231	0.29	+1.0
3,286,165	+		GFF3231	0.35	+0.5
3,286,165	+		GFF3231	0.35	-0.0
3,286,165	+		GFF3231	0.35	-1.3
3,286,211	+		GFF3231	0.40	+0.6
3,286,217	+		GFF3231	0.41	+0.4
3,286,217	+		GFF3231	0.41	-1.0
3,286,217	+		GFF3231	0.41	-0.8
3,286,219	-		GFF3231	0.41	-2.2
3,286,219	-		GFF3231	0.41	+0.1
3,286,225	-		GFF3231	0.42	-0.2
3,286,233	-		GFF3231	0.43	+0.3
3,286,236	+		GFF3231	0.43	+0.5
3,286,236	+		GFF3231	0.43	-0.7
3,286,236	+		GFF3231	0.43	-0.4
3,286,244	-		GFF3231	0.44	+0.9
3,286,244	-		GFF3231	0.44	+0.1
3,286,246	+		GFF3231	0.44	+0.4
3,286,281	+		GFF3231	0.49	+1.1
3,286,289	-		GFF3231	0.50	+0.3
3,286,289	-		GFF3231	0.50	-0.3
3,286,297	+		GFF3231	0.51	+0.3
3,286,302	+		GFF3231	0.51	+2.2
3,286,302	+		GFF3231	0.51	+0.6
3,286,307	+		GFF3231	0.52	+0.6
3,286,312	+		GFF3231	0.52	-2.0
3,286,312	+		GFF3231	0.52	-1.1
3,286,312	+		GFF3231	0.52	-0.7
3,286,315	-		GFF3231	0.53	+0.5
3,286,320	-		GFF3231	0.53	-0.1
3,286,329	-		GFF3231	0.54	-1.7
3,286,339	+		GFF3231	0.56	-0.9
3,286,339	+		GFF3231	0.56	-1.9
3,286,347	-		GFF3231	0.57	+0.6
3,286,347	-		GFF3231	0.57	+0.3
3,286,349	-		GFF3231	0.57	+1.2
3,286,356	-		GFF3231	0.58	+0.5
3,286,356	-		GFF3231	0.58	-1.4
3,286,391	+		GFF3231	0.62	+1.2
3,286,395	+		GFF3231	0.62	+0.4
3,286,400	+		GFF3231	0.63	-0.9
3,286,400	+		GFF3231	0.63	-1.3
3,286,403	-		GFF3231	0.63	-0.2
3,286,403	-		GFF3231	0.63	+1.1
3,286,405	+		GFF3231	0.64	-0.9
3,286,413	-		GFF3231	0.65	-0.4
3,286,413	-		GFF3231	0.65	+1.3
3,286,426	+		GFF3231	0.66	+0.3
3,286,426	+		GFF3231	0.66	-0.6
3,286,441	+		GFF3231	0.68	+1.5
3,286,441	+		GFF3231	0.68	+0.7
3,286,441	+		GFF3231	0.68	-1.7
3,286,441	+		GFF3231	0.68	+0.8
3,286,444	-		GFF3231	0.68	-0.2
3,286,449	-		GFF3231	0.69	+2.1
3,286,449	-		GFF3231	0.69	-0.4
3,286,449	-		GFF3231	0.69	+1.3
3,286,460	+		GFF3231	0.70	+0.2
3,286,480	-		GFF3231	0.73	-2.3
3,286,491	+		GFF3231	0.74	+2.1
3,286,510	+		GFF3231	0.76	+0.2
3,286,518	+		GFF3231	0.77	-0.4
3,286,530	+		GFF3231	0.79	-0.4
3,286,538	-		GFF3231	0.80	+0.1
3,286,538	-		GFF3231	0.80	-0.6
3,286,579	+		GFF3231	0.85	+0.3
3,286,609	+		GFF3231	0.88	-0.7
3,286,622	-				+0.3
3,286,653	-				+0.2
3,286,655	+				-1.3
3,286,658	-				-0.2
3,286,704	-				-1.2
3,286,779	+				+0.3
3,286,789	-				-0.7
3,286,799	+				-0.0
3,286,804	+				+1.5
3,286,804	+				-0.6
3,286,806	+				+0.5
3,286,806	+				+1.1
3,286,806	+				+0.1
3,286,806	+				+0.9
3,286,806	+				-0.4
3,286,812	+				-0.0
3,286,812	-				+1.4
3,286,814	-				+0.9
3,286,814	-				+0.2
3,286,814	-				-0.7
3,286,820	-				+1.5
3,286,848	-				-0.5
3,286,848	-				+0.6
3,286,848	-				+0.5
3,286,868	-				-0.5
3,286,869	+				+0.1
3,286,876	+				-0.6
3,286,876	+				-0.9
3,286,877	-				+0.9
3,286,884	-				-0.4
3,286,902	+				+1.2
3,286,923	+				-0.2
3,286,923	+				+1.0
3,286,927	-				+1.0
3,286,931	-				+1.0
3,286,986	+				-1.9
3,286,987	+				-0.9
3,286,987	+				+0.6
3,286,987	+				+1.3
3,286,987	+				-1.3
3,286,988	+				+0.6
3,286,994	-				-0.5
3,286,994	-				+1.1
3,286,994	-				+1.8
3,287,021	+				+0.5
3,287,024	-		GFF3232	0.10	-0.7
3,287,031	-		GFF3232	0.14	+0.1
3,287,042	-		GFF3232	0.19	-0.1
3,287,045	+		GFF3232	0.21	-0.0
3,287,112	+		GFF3232	0.53	+0.3
3,287,112	+		GFF3232	0.53	+0.0
3,287,113	-		GFF3232	0.54	-1.1
3,287,121	+		GFF3232	0.58	+1.7
3,287,121	+		GFF3232	0.58	+1.3
3,287,121	-		GFF3232	0.58	-2.1
3,287,129	+		GFF3232	0.62	-1.3
3,287,137	-		GFF3232	0.66	+0.5
3,287,139	+		GFF3232	0.67	-1.9
3,287,140	+		GFF3232	0.67	+0.3
3,287,140	+		GFF3232	0.67	-1.3
3,287,141	+		GFF3232	0.68	+0.7
3,287,148	-		GFF3232	0.71	-0.1
3,287,162	+		GFF3232	0.78	-0.0
3,287,162	+		GFF3232	0.78	-0.5
3,287,167	+		GFF3232	0.80	-0.1
3,287,199	+				+0.6
3,287,199	+				+0.3
3,287,199	+				-0.5
3,287,217	-				+0.5
3,287,217	-				-0.3
3,287,234	+				-0.4
3,287,235	+				+0.5
3,287,242	-				-1.2
3,287,271	-				-2.0
3,287,325	+				-0.6
3,287,330	-				-0.7
3,287,333	+				+0.8
3,287,333	+				-0.7
3,287,333	-				+0.4
3,287,341	-				+0.3
3,287,341	-				-0.0
3,287,351	+				+0.6
3,287,359	-				-0.8
3,287,364	-				+2.5
3,287,437	+				-1.5
3,287,437	+				+0.8
3,287,437	+				-0.3
3,287,437	+				+0.0
3,287,437	+				-1.4
3,287,437	-				-2.8
3,287,437	-				+0.2
3,287,445	-				+1.5
3,287,446	+				-0.4
3,287,478	-				-0.1
3,287,478	-				+0.1
3,287,483	-				-1.4
3,287,483	-				-0.5
3,287,511	-				+0.7
3,287,568	+		GFF3233	0.57	-0.2
3,287,599	-		GFF3233	0.84	-0.5