Strain Fitness in Sphingobium sp. HT1-2 around GFF3204

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,261,079	+		GFF3200	0.73	-0.2
3,261,089	+		GFF3200	0.75	-0.1
3,261,090	+		GFF3200	0.75	+0.9
3,261,097	-		GFF3200	0.77	-0.2
3,261,097	-		GFF3200	0.77	+0.7
3,261,102	-		GFF3200	0.78	-0.6
3,261,111	+		GFF3200	0.81	+1.5
3,261,181	+				+0.6
3,261,184	-				+0.7
3,261,323	-				+0.2
3,261,324	+				+0.5
3,261,344	-				-1.0
3,261,345	+				+2.4
3,261,356	+				+0.8
3,261,360	+				-0.3
3,261,368	-				+0.2
3,261,393	+		GFF3201	0.13	-0.3
3,261,393	+		GFF3201	0.13	+0.4
3,261,393	+		GFF3201	0.13	-0.8
3,261,393	+		GFF3201	0.13	-0.5
3,261,393	+		GFF3201	0.13	+0.3
3,261,393	+		GFF3201	0.13	+0.7
3,261,393	+		GFF3201	0.13	-0.7
3,261,393	+		GFF3201	0.13	+0.6
3,261,393	+		GFF3201	0.13	+0.1
3,261,406	+		GFF3201	0.26	-0.4
3,261,427	+		GFF3201	0.46	+1.1
3,261,427	+		GFF3201	0.46	+0.0
3,261,442	-		GFF3201	0.60	-0.4
3,261,450	-		GFF3201	0.68	+0.3
3,261,464	+		GFF3201	0.81	-0.1
3,261,482	+				+1.3
3,261,523	+				+0.6
3,261,523	+				+0.6
3,261,523	+				+0.5
3,261,530	+				+0.0
3,261,531	-				-0.1
3,261,541	-				-0.7
3,261,549	+				+1.0
3,261,549	+				-1.1
3,261,551	-				-0.5
3,261,556	-		GFF3202	0.12	-1.9
3,261,571	+		GFF3202	0.20	+2.1
3,261,571	+		GFF3202	0.20	-1.1
3,261,571	+		GFF3202	0.20	-2.2
3,261,571	+		GFF3202	0.20	-0.1
3,261,571	+		GFF3202	0.20	+0.6
3,261,571	+		GFF3202	0.20	+0.7
3,261,571	+		GFF3202	0.20	+0.3
3,261,571	+		GFF3202	0.20	-1.4
3,261,571	+		GFF3202	0.20	-0.8
3,261,571	+		GFF3202	0.20	+0.8
3,261,571	+		GFF3202	0.20	+0.4
3,261,571	+		GFF3202	0.20	+1.2
3,261,571	+		GFF3202	0.20	-1.9
3,261,579	-		GFF3202	0.25	-1.3
3,261,579	-		GFF3202	0.25	-0.3
3,261,579	-		GFF3202	0.25	+0.8
3,261,579	-		GFF3202	0.25	+0.6
3,261,579	-		GFF3202	0.25	-0.9
3,261,579	-		GFF3202	0.25	-0.4
3,261,579	-		GFF3202	0.25	+0.5
3,261,579	-		GFF3202	0.25	-0.2
3,261,581	-		GFF3202	0.26	+0.3
3,261,581	-		GFF3202	0.26	-0.4
3,261,609	+		GFF3202	0.41	+0.6
3,261,615	+		GFF3202	0.44	+0.2
3,261,625	+		GFF3202	0.49	-0.2
3,261,625	+		GFF3202	0.49	+1.4
3,261,630	+		GFF3202	0.52	-0.1
3,261,630	+		GFF3202	0.52	+0.3
3,261,633	-		GFF3202	0.54	-0.1
3,261,635	+		GFF3202	0.55	-1.4
3,261,635	+		GFF3202	0.55	+0.2
3,261,635	+		GFF3202	0.55	-0.6
3,261,638	-		GFF3202	0.56	-1.0
3,261,638	-		GFF3202	0.56	+1.7
3,261,641	+		GFF3202	0.58	+0.4
3,261,649	-		GFF3202	0.62	-0.6
3,261,653	-		GFF3202	0.65	-0.1
3,261,660	+		GFF3202	0.68	-1.8
3,261,660	+		GFF3202	0.68	+0.6
3,261,660	-		GFF3202	0.68	-1.6
3,261,668	-		GFF3202	0.73	-1.1
3,261,668	-		GFF3202	0.73	+1.5
3,261,668	-		GFF3202	0.73	-0.4
3,261,668	-		GFF3202	0.73	-1.1
3,261,668	-		GFF3202	0.73	-1.7
3,261,668	-		GFF3202	0.73	+0.6
3,261,670	+		GFF3202	0.74	-0.5
3,261,685	-		GFF3202	0.82	-0.5
3,261,685	-		GFF3202	0.82	-0.2
3,261,691	-		GFF3202	0.85	+2.0
3,261,706	+				-1.3
3,261,707	+				-0.4
3,261,732	+				+0.7
3,261,771	+				+0.4
3,261,779	-				-1.5
3,261,780	-				+1.1
3,261,785	-				-1.9
3,261,785	-				+1.1
3,261,811	+				-0.5
3,261,811	+				+0.4
3,261,819	-				-0.2
3,261,819	-				-0.4
3,261,825	-				+1.5
3,261,840	-				+1.3
3,261,847	+		GFF3203	0.11	-1.8
3,261,847	+		GFF3203	0.11	-0.5
3,261,848	-		GFF3203	0.12	+0.7
3,261,855	-		GFF3203	0.19	-0.2
3,261,855	-		GFF3203	0.19	+0.4
3,261,855	-		GFF3203	0.19	+0.1
3,261,861	-		GFF3203	0.25	+1.0
3,261,876	-		GFF3203	0.40	-0.5
3,261,878	+		GFF3203	0.42	-0.5
3,261,880	+		GFF3203	0.44	+0.3
3,261,887	+		GFF3203	0.52	+1.3
3,261,895	-		GFF3203	0.60	+0.6
3,261,901	+		GFF3203	0.66	-1.4
3,261,918	+		GFF3203	0.83	-0.7
3,262,061	-				+0.4
3,262,084	+				+0.2
3,262,084	+				-0.3
3,262,092	+				-0.4
3,262,092	-				+0.7
3,262,100	-				-0.6
3,262,100	-				-0.2
3,262,100	-				-0.5
3,262,100	-				+0.6
3,262,121	+		GFF3204	0.11	+0.3
3,262,121	+		GFF3204	0.11	-0.3
3,262,126	+		GFF3204	0.12	+0.2
3,262,129	-		GFF3204	0.12	-1.8
3,262,134	-		GFF3204	0.13	-2.0
3,262,134	-		GFF3204	0.13	-0.3
3,262,134	-		GFF3204	0.13	-0.5
3,262,179	+		GFF3204	0.19	-1.2
3,262,181	-		GFF3204	0.19	-1.5
3,262,183	+		GFF3204	0.20	+2.1
3,262,189	-		GFF3204	0.20	-0.1
3,262,189	-		GFF3204	0.20	+0.8
3,262,192	+		GFF3204	0.21	-1.3
3,262,192	+		GFF3204	0.21	-0.4
3,262,194	+		GFF3204	0.21	-0.1
3,262,197	-		GFF3204	0.21	+1.4
3,262,200	-		GFF3204	0.22	-1.7
3,262,254	-		GFF3204	0.29	-0.3
3,262,262	-		GFF3204	0.30	-0.9
3,262,271	+		GFF3204	0.31	-0.1
3,262,274	-		GFF3204	0.32	+1.0
3,262,309	-		GFF3204	0.36	-0.6
3,262,309	-		GFF3204	0.36	+0.7
3,262,321	+		GFF3204	0.38	+0.1
3,262,321	+		GFF3204	0.38	+0.7
3,262,350	+		GFF3204	0.42	+0.8
3,262,350	+		GFF3204	0.42	+0.4
3,262,350	+		GFF3204	0.42	-0.1
3,262,350	+		GFF3204	0.42	-0.0
3,262,350	+		GFF3204	0.42	+1.8
3,262,363	+		GFF3204	0.44	-1.1
3,262,363	+		GFF3204	0.44	-1.1
3,262,366	-		GFF3204	0.44	+0.1
3,262,366	-		GFF3204	0.44	-0.4
3,262,442	+		GFF3204	0.54	-0.0
3,262,464	+		GFF3204	0.57	+1.2
3,262,464	+		GFF3204	0.57	-2.2
3,262,471	-		GFF3204	0.58	-2.1
3,262,480	-		GFF3204	0.59	-1.7
3,262,480	-		GFF3204	0.59	-0.6
3,262,480	-		GFF3204	0.59	+0.1
3,262,490	-		GFF3204	0.61	-0.4
3,262,579	+		GFF3204	0.72	+0.3
3,262,634	-		GFF3204	0.80	-0.8
3,262,654	+		GFF3204	0.82	-1.1
3,262,657	-		GFF3204	0.83	-0.6
3,262,671	+		GFF3204	0.85	-0.1
3,262,677	+		GFF3204	0.85	-1.3
3,262,677	+		GFF3204	0.85	-1.3
3,262,677	-		GFF3204	0.85	+0.7
3,262,679	-		GFF3204	0.86	-0.1
3,262,682	+		GFF3204	0.86	-0.0
3,262,685	-		GFF3204	0.87	+1.1
3,262,685	-		GFF3204	0.87	-0.4
3,262,687	+		GFF3204	0.87	-0.6
3,262,687	+		GFF3204	0.87	+0.4
3,262,687	+		GFF3204	0.87	-0.5
3,262,689	-		GFF3204	0.87	+0.1
3,262,692	+		GFF3204	0.87	-0.3
3,262,692	+		GFF3204	0.87	+1.3
3,262,716	+				+0.6
3,262,718	+				-2.1
3,262,726	-				+0.9
3,262,738	+				+0.3
3,262,742	+				+0.1
3,262,747	-				-0.2
3,262,749	+				-0.7
3,262,761	+				-1.1
3,262,761	+				-0.8
3,262,766	+				+0.3
3,262,774	-				-0.0
3,262,774	-				+0.7
3,262,774	-				+1.9
3,262,781	+				-0.3
3,262,807	-				-1.0
3,262,823	+				+0.6
3,262,830	-				-1.6
3,262,831	-				-0.5
3,262,831	-				+0.7
3,262,831	-				+1.5
3,262,831	-				-0.1
3,262,896	-				+1.1
3,262,904	-				-0.4
3,262,904	-				+0.3
3,262,910	+				-0.4
3,262,920	+				-1.4
3,262,920	+				-1.4
3,262,920	+				+0.0
3,262,920	+				+0.6
3,262,928	-				-1.8
3,262,928	-				-0.6
3,262,928	-				-0.4
3,262,954	+		GFF3205	0.20	-1.7
3,262,954	+		GFF3205	0.20	-0.4
3,262,954	+		GFF3205	0.20	+0.1
3,262,955	+		GFF3205	0.21	+0.3
3,262,955	+		GFF3205	0.21	+0.7
3,262,955	+		GFF3205	0.21	-0.9
3,262,962	-		GFF3205	0.24	+1.3
3,263,017	-		GFF3205	0.47	+1.3
3,263,027	-		GFF3205	0.51	+0.4
3,263,031	+		GFF3205	0.53	-1.2
3,263,039	-		GFF3205	0.56	-0.8
3,263,044	+		GFF3205	0.58	-0.2
3,263,123	+				+0.2
3,263,131	+				-0.9
3,263,145	-				-0.7
3,263,153	-				+0.3
3,263,176	+				-0.6
3,263,181	+				-0.2
3,263,181	+				+1.8
3,263,184	-				-1.0
3,263,184	-				-0.1
3,263,184	-				-0.2
3,263,184	-				-1.4
3,263,186	+				+0.5
3,263,188	+				-1.2
3,263,189	-				+0.2
3,263,194	-				-0.3
3,263,194	-				-0.5
3,263,194	-				-1.0
3,263,195	-				-0.1
3,263,195	-				-0.1
3,263,217	+		GFF3206	0.10	-0.4
3,263,252	-		GFF3206	0.16	-1.6
3,263,281	-		GFF3206	0.20	-0.2
3,263,294	+		GFF3206	0.22	+1.8
3,263,294	+		GFF3206	0.22	-0.7
3,263,294	+		GFF3206	0.22	-0.4
3,263,302	+		GFF3206	0.23	-0.3
3,263,302	-		GFF3206	0.23	+0.1
3,263,302	-		GFF3206	0.23	-1.6
3,263,331	+		GFF3206	0.27	+1.0
3,263,332	-		GFF3206	0.27	-0.2
3,263,336	-		GFF3206	0.28	-1.2
3,263,338	+		GFF3206	0.28	-2.4
3,263,338	+		GFF3206	0.28	+0.7
3,263,344	+		GFF3206	0.29	-2.1
3,263,353	+		GFF3206	0.31	+1.4
3,263,355	+		GFF3206	0.31	-0.6
3,263,361	-		GFF3206	0.32	+1.0
3,263,367	+		GFF3206	0.33	-0.3
3,263,372	+		GFF3206	0.33	-1.7
3,263,375	-		GFF3206	0.34	-0.2
3,263,375	-		GFF3206	0.34	+0.3
3,263,375	-		GFF3206	0.34	+0.3
3,263,398	+		GFF3206	0.37	+0.5
3,263,398	+		GFF3206	0.37	-0.1
3,263,398	+		GFF3206	0.37	+1.7
3,263,403	+		GFF3206	0.38	+0.6
3,263,406	-		GFF3206	0.38	+1.3
3,263,438	-		GFF3206	0.43	+0.5
3,263,440	+		GFF3206	0.43	+0.2
3,263,443	-		GFF3206	0.44	-1.7
3,263,448	-		GFF3206	0.45	+0.5
3,263,451	+		GFF3206	0.45	-1.7
3,263,459	-		GFF3206	0.46	+0.1
3,263,495	+		GFF3206	0.52	-0.6
3,263,495	+		GFF3206	0.52	-1.4
3,263,528	+		GFF3206	0.56	-0.7
3,263,531	-		GFF3206	0.57	-0.7
3,263,533	+		GFF3206	0.57	-1.3
3,263,550	+		GFF3206	0.60	-0.5
3,263,550	+		GFF3206	0.60	-0.7
3,263,552	-		GFF3206	0.60	+0.3
3,263,555	+		GFF3206	0.60	+0.4
3,263,558	-		GFF3206	0.61	-0.3
3,263,558	-		GFF3206	0.61	-0.6
3,263,560	+		GFF3206	0.61	-0.7
3,263,568	-		GFF3206	0.62	-0.2
3,263,568	-		GFF3206	0.62	+0.2
3,263,572	+		GFF3206	0.63	-0.1
3,263,577	+		GFF3206	0.64	-1.4
3,263,577	+		GFF3206	0.64	+0.4
3,263,577	+		GFF3206	0.64	+0.4
3,263,577	+		GFF3206	0.64	-1.4
3,263,577	+		GFF3206	0.64	+0.4
3,263,585	-		GFF3206	0.65	+1.0
3,263,585	-		GFF3206	0.65	+0.6
3,263,585	-		GFF3206	0.65	-1.4
3,263,585	-		GFF3206	0.65	-0.6
3,263,597	+		GFF3206	0.67	+0.4
3,263,597	+		GFF3206	0.67	-0.9
3,263,597	+		GFF3206	0.67	-2.1
3,263,597	+		GFF3206	0.67	+0.6
3,263,597	+		GFF3206	0.67	+1.2
3,263,605	-		GFF3206	0.68	+0.0
3,263,605	-		GFF3206	0.68	+0.3
3,263,605	-		GFF3206	0.68	-1.8
3,263,605	-		GFF3206	0.68	-0.4
3,263,605	-		GFF3206	0.68	-0.0
3,263,605	-		GFF3206	0.68	+1.1
3,263,605	-		GFF3206	0.68	-0.1
3,263,605	-		GFF3206	0.68	+0.6
3,263,605	-		GFF3206	0.68	-1.4
3,263,623	+		GFF3206	0.71	-0.5
3,263,626	+		GFF3206	0.71	+0.8
3,263,639	-		GFF3206	0.73	-2.3
3,263,654	+		GFF3206	0.75	-0.3
3,263,654	+		GFF3206	0.75	-0.7
3,263,654	+		GFF3206	0.75	-0.5
3,263,654	+		GFF3206	0.75	+1.3
3,263,654	+		GFF3206	0.75	+0.0
3,263,662	-		GFF3206	0.76	-0.3
3,263,662	-		GFF3206	0.76	-2.1
3,263,662	-		GFF3206	0.76	+0.4
3,263,662	-		GFF3206	0.76	+0.9
3,263,662	-		GFF3206	0.76	+0.4
3,263,662	-		GFF3206	0.76	-0.1
3,263,665	+		GFF3206	0.77	-1.7
3,263,697	-		GFF3206	0.81	-0.6
3,263,723	+		GFF3206	0.85	+1.2
3,263,731	-		GFF3206	0.87	-1.1
3,263,752	+		GFF3206	0.90	-1.4
3,263,759	-				+0.9
3,263,761	+				-1.3
3,263,762	+				+0.9
3,263,762	+				-0.8
3,263,765	-				-1.7
3,263,765	-				-1.2
3,263,765	-				+0.9
3,263,765	-				-0.1
3,263,767	+				+1.0
3,263,770	-				-0.3
3,263,771	+				+1.0
3,263,771	+				+1.6
3,263,771	+				-0.4
3,263,771	+				-1.0
3,263,771	+				+0.6
3,263,777	-				-0.2
3,263,779	-				-0.7
3,263,779	-				+1.6
3,263,784	+				-1.6