Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF317 and GFF318 overlap by 1 nucleotides GFF318 and GFF319 overlap by 11 nucleotides GFF319 and GFF320 are separated by 21 nucleotides GFF320 and GFF321 are separated by 87 nucleotides GFF321 and GFF322 are separated by 218 nucleotides
GFF317 - tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5), at 312,730 to 313,971
GFF317
GFF318 - Signal recognition particle receptor FtsY, at 313,971 to 314,909
GFF318
GFF319 - Intracellular septation protein IspA, at 314,899 to 315,552
GFF319
GFF320 - Regulator of nucleoside diphosphate kinase, at 315,574 to 315,984
GFF320
GFF321 - hypothetical protein, at 316,072 to 316,185
GFF321
GFF322 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 316,404 to 317,018
GFF322
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.904 kb on - strand at 313.912 kb on - strand at 313.926 kb on - strand at 313.931 kb on + strand at 314.985 kb on + strand, within GFF319 at 314.992 kb on + strand, within GFF319 at 315.002 kb on + strand, within GFF319 at 315.003 kb on + strand, within GFF319 at 315.003 kb on + strand, within GFF319 at 315.003 kb on + strand, within GFF319 at 315.003 kb on + strand, within GFF319 at 315.011 kb on - strand, within GFF319 at 315.011 kb on - strand, within GFF319 at 315.031 kb on + strand, within GFF319 at 315.113 kb on + strand, within GFF319 at 315.218 kb on - strand, within GFF319 at 315.231 kb on + strand, within GFF319 at 315.267 kb on + strand, within GFF319 at 315.293 kb on + strand, within GFF319 at 315.303 kb on + strand, within GFF319 at 315.311 kb on - strand, within GFF319 at 315.376 kb on + strand, within GFF319 at 315.396 kb on + strand, within GFF319 at 315.420 kb on + strand, within GFF319 at 315.428 kb on - strand, within GFF319 at 315.496 kb on - strand at 315.496 kb on - strand at 315.502 kb on - strand at 315.505 kb on + strand at 315.512 kb on + strand at 315.513 kb on - strand at 315.513 kb on - strand at 315.515 kb on + strand at 315.523 kb on - strand at 315.523 kb on - strand at 315.526 kb on + strand at 315.538 kb on - strand at 315.546 kb on + strand at 315.554 kb on - strand at 315.555 kb on - strand at 315.555 kb on - strand at 315.555 kb on - strand at 315.557 kb on + strand at 315.557 kb on + strand at 315.557 kb on + strand at 315.557 kb on + strand at 315.557 kb on + strand at 315.557 kb on + strand at 315.562 kb on + strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.565 kb on - strand at 315.570 kb on - strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.572 kb on + strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.580 kb on - strand at 315.584 kb on + strand at 315.592 kb on - strand at 315.603 kb on + strand at 315.603 kb on + strand at 315.610 kb on + strand at 315.613 kb on + strand at 315.635 kb on + strand, within GFF320 at 315.642 kb on + strand, within GFF320 at 315.643 kb on - strand, within GFF320 at 315.648 kb on - strand, within GFF320 at 315.648 kb on - strand, within GFF320 at 315.665 kb on - strand, within GFF320 at 315.701 kb on + strand, within GFF320 at 315.726 kb on + strand, within GFF320 at 315.726 kb on + strand, within GFF320 at 315.726 kb on + strand, within GFF320 at 315.726 kb on + strand, within GFF320 at 315.726 kb on + strand, within GFF320 at 315.731 kb on + strand, within GFF320 at 315.731 kb on + strand, within GFF320 at 315.731 kb on + strand, within GFF320 at 315.731 kb on + strand, within GFF320 at 315.731 kb on + strand, within GFF320 at 315.734 kb on - strand, within GFF320 at 315.734 kb on - strand, within GFF320 at 315.736 kb on + strand, within GFF320 at 315.739 kb on - strand, within GFF320 at 315.739 kb on - strand, within GFF320 at 315.739 kb on - strand, within GFF320 at 315.739 kb on - strand, within GFF320 at 315.743 kb on - strand, within GFF320 at 315.744 kb on - strand, within GFF320 at 315.744 kb on - strand, within GFF320 at 315.744 kb on - strand, within GFF320 at 315.744 kb on - strand, within GFF320 at 315.749 kb on - strand, within GFF320 at 315.749 kb on - strand, within GFF320 at 315.749 kb on - strand, within GFF320 at 315.759 kb on - strand, within GFF320 at 315.783 kb on - strand, within GFF320 at 315.789 kb on - strand, within GFF320 at 315.822 kb on + strand, within GFF320 at 315.855 kb on + strand, within GFF320 at 315.863 kb on - strand, within GFF320 at 315.876 kb on + strand, within GFF320 at 315.884 kb on - strand, within GFF320 at 315.897 kb on - strand, within GFF320 at 315.899 kb on + strand, within GFF320 at 315.899 kb on + strand, within GFF320 at 315.899 kb on + strand, within GFF320 at 315.907 kb on - strand, within GFF320 at 315.941 kb on + strand, within GFF320 at 315.997 kb on + strand at 316.000 kb on - strand at 316.016 kb on + strand at 316.016 kb on + strand at 316.016 kb on + strand at 316.031 kb on + strand at 316.031 kb on + strand at 316.031 kb on + strand at 316.033 kb on + strand at 316.039 kb on - strand at 316.041 kb on - strand at 316.045 kb on + strand at 316.046 kb on + strand at 316.053 kb on + strand at 316.053 kb on - strand at 316.071 kb on + strand at 316.073 kb on - strand at 316.102 kb on - strand, within GFF321 at 316.125 kb on + strand, within GFF321 at 316.130 kb on + strand, within GFF321 at 316.154 kb on - strand, within GFF321 at 316.162 kb on + strand, within GFF321 at 316.162 kb on + strand, within GFF321 at 316.171 kb on + strand, within GFF321 at 316.171 kb on + strand, within GFF321 at 316.175 kb on - strand at 316.199 kb on + strand at 316.202 kb on - strand at 316.207 kb on - strand at 316.219 kb on + strand at 316.226 kb on + strand at 316.227 kb on - strand at 316.227 kb on - strand at 316.234 kb on - strand at 316.300 kb on + strand at 316.300 kb on + strand at 316.308 kb on + strand at 316.308 kb on + strand at 316.317 kb on - strand at 316.317 kb on - strand at 316.326 kb on - strand at 316.342 kb on - strand at 316.361 kb on + strand at 316.376 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 313,904 - -1.5 313,912 - -1.7 313,926 - +0.6 313,931 + -0.1 314,985 + GFF319 0.13 -2.4 314,992 + GFF319 0.14 -0.1 315,002 + GFF319 0.16 +0.3 315,003 + GFF319 0.16 +0.3 315,003 + GFF319 0.16 +1.1 315,003 + GFF319 0.16 -1.2 315,003 + GFF319 0.16 -1.6 315,011 - GFF319 0.17 -0.3 315,011 - GFF319 0.17 +0.0 315,031 + GFF319 0.20 -0.8 315,113 + GFF319 0.33 -1.5 315,218 - GFF319 0.49 -2.0 315,231 + GFF319 0.51 +0.9 315,267 + GFF319 0.56 -0.8 315,293 + GFF319 0.60 -0.8 315,303 + GFF319 0.62 -1.3 315,311 - GFF319 0.63 -0.3 315,376 + GFF319 0.73 -1.2 315,396 + GFF319 0.76 -1.4 315,420 + GFF319 0.80 +0.3 315,428 - GFF319 0.81 +0.4 315,496 - -1.4 315,496 - +1.1 315,502 - +0.1 315,505 + +0.8 315,512 + +0.1 315,513 - +1.7 315,513 - -2.6 315,515 + -0.6 315,523 - -1.8 315,523 - +0.7 315,526 + -1.3 315,538 - -0.2 315,546 + -1.0 315,554 - +1.5 315,555 - +1.1 315,555 - +0.7 315,555 - +0.1 315,557 + -1.7 315,557 + -1.1 315,557 + -0.6 315,557 + +0.3 315,557 + +1.8 315,557 + -0.3 315,562 + -0.9 315,565 - -1.6 315,565 - +0.8 315,565 - -1.1 315,565 - -0.7 315,565 - -0.3 315,565 - +0.2 315,565 - -0.1 315,565 - +0.8 315,565 - -1.1 315,565 - +0.3 315,565 - -1.3 315,565 - -0.1 315,565 - +0.5 315,570 - -0.4 315,572 + -1.4 315,572 + +0.9 315,572 + -1.9 315,572 + -1.1 315,572 + +1.1 315,572 + -2.2 315,572 + -2.5 315,572 + +0.6 315,572 + +0.3 315,572 + +0.7 315,572 + -0.7 315,572 + -0.4 315,572 + -0.2 315,572 + -1.2 315,572 + -1.3 315,572 + -0.6 315,572 + +0.1 315,572 + -1.2 315,572 + -1.5 315,572 + +0.5 315,572 + -0.3 315,580 - -0.2 315,580 - -0.3 315,580 - -0.7 315,580 - +0.4 315,580 - +0.4 315,580 - -0.5 315,580 - +1.9 315,580 - +0.0 315,580 - -1.2 315,580 - +1.0 315,580 - +0.2 315,580 - -0.2 315,580 - +0.5 315,580 - -1.6 315,580 - -0.8 315,580 - -2.9 315,580 - -2.4 315,580 - +0.5 315,580 - +0.4 315,580 - -0.9 315,580 - -1.1 315,580 - +0.6 315,580 - -2.1 315,580 - -0.3 315,580 - -0.5 315,584 + -0.4 315,592 - -1.1 315,603 + +1.0 315,603 + +1.1 315,610 + -1.1 315,613 + -1.5 315,635 + GFF320 0.15 -1.2 315,642 + GFF320 0.17 +0.9 315,643 - GFF320 0.17 +0.4 315,648 - GFF320 0.18 -0.6 315,648 - GFF320 0.18 -0.9 315,665 - GFF320 0.22 -1.1 315,701 + GFF320 0.31 -0.3 315,726 + GFF320 0.37 -0.3 315,726 + GFF320 0.37 -0.3 315,726 + GFF320 0.37 +0.9 315,726 + GFF320 0.37 -0.2 315,726 + GFF320 0.37 +0.4 315,731 + GFF320 0.38 -0.3 315,731 + GFF320 0.38 +1.4 315,731 + GFF320 0.38 +0.1 315,731 + GFF320 0.38 +0.1 315,731 + GFF320 0.38 -2.1 315,734 - GFF320 0.39 -1.4 315,734 - GFF320 0.39 -1.5 315,736 + GFF320 0.39 +0.7 315,739 - GFF320 0.40 -0.1 315,739 - GFF320 0.40 +0.0 315,739 - GFF320 0.40 -0.5 315,739 - GFF320 0.40 -2.8 315,743 - GFF320 0.41 -0.7 315,744 - GFF320 0.41 +0.6 315,744 - GFF320 0.41 +0.2 315,744 - GFF320 0.41 -0.7 315,744 - GFF320 0.41 -1.2 315,749 - GFF320 0.43 -0.1 315,749 - GFF320 0.43 -1.1 315,749 - GFF320 0.43 -0.9 315,759 - GFF320 0.45 +0.2 315,783 - GFF320 0.51 -2.5 315,789 - GFF320 0.52 +1.5 315,822 + GFF320 0.60 -0.2 315,855 + GFF320 0.68 +1.1 315,863 - GFF320 0.70 +0.8 315,876 + GFF320 0.73 +0.9 315,884 - GFF320 0.75 +0.5 315,897 - GFF320 0.79 -0.5 315,899 + GFF320 0.79 +0.7 315,899 + GFF320 0.79 -0.2 315,899 + GFF320 0.79 -2.2 315,907 - GFF320 0.81 +0.6 315,941 + GFF320 0.89 +1.0 315,997 + +0.6 316,000 - -1.5 316,016 + +1.0 316,016 + +1.7 316,016 + -1.9 316,031 + +1.3 316,031 + -1.5 316,031 + -0.7 316,033 + -0.8 316,039 - +0.8 316,041 - -2.5 316,045 + +1.4 316,046 + -0.1 316,053 + -1.6 316,053 - -1.9 316,071 + +0.5 316,073 - -0.1 316,102 - GFF321 0.26 -1.4 316,125 + GFF321 0.46 -1.7 316,130 + GFF321 0.51 -1.3 316,154 - GFF321 0.72 -1.1 316,162 + GFF321 0.79 -1.0 316,162 + GFF321 0.79 +0.2 316,171 + GFF321 0.87 -1.7 316,171 + GFF321 0.87 +0.7 316,175 - +0.8 316,199 + -0.7 316,202 - -0.2 316,207 - -0.1 316,219 + +0.2 316,226 + +1.5 316,227 - +0.9 316,227 - -1.5 316,234 - +0.3 316,300 + -1.7 316,300 + -1.8 316,308 + -0.9 316,308 + -0.2 316,317 - -1.3 316,317 - +0.3 316,326 - -1.4 316,342 - +0.8 316,361 + -1.3 316,376 + +0.5
Or see this region's nucleotide sequence