Strain Fitness in Sphingobium sp. HT1-2 around GFF3183

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,245,031	-				+1.1
3,245,031	-				-0.1
3,245,422	-				-0.1
3,245,429	-				-1.2
3,245,486	+				-1.2
3,245,502	-				+1.0
3,245,512	-				+0.3
3,245,567	-				+0.5
3,245,736	+				+0.7
3,245,736	+				+0.9
3,245,736	+				-0.9
3,245,738	+				-0.4
3,245,744	-				+0.1
3,245,744	-				+0.5
3,245,746	-				-0.5
3,245,751	+				+1.0
3,245,768	-				+0.3
3,245,768	-				+0.3
3,245,795	+				+0.0
3,245,796	-				-2.0
3,245,803	-				-0.7
3,245,815	+				+0.8
3,245,856	+		GFF3183	0.10	-1.2
3,245,856	-		GFF3183	0.10	-1.1
3,245,889	-		GFF3183	0.13	-0.4
3,245,889	-		GFF3183	0.13	+0.0
3,245,922	-		GFF3183	0.17	+0.8
3,245,930	+		GFF3183	0.17	+0.9
3,245,930	+		GFF3183	0.17	-0.3
3,245,936	-		GFF3183	0.18	-2.1
3,245,938	-		GFF3183	0.18	-1.2
3,245,938	-		GFF3183	0.18	-1.8
3,245,963	+		GFF3183	0.21	-1.1
3,245,971	+		GFF3183	0.21	+0.3
3,245,979	-		GFF3183	0.22	+0.1
3,245,982	+		GFF3183	0.22	+0.8
3,245,994	+		GFF3183	0.24	-1.4
3,246,015	+		GFF3183	0.26	-1.4
3,246,034	+		GFF3183	0.27	-0.1
3,246,042	-		GFF3183	0.28	+0.4
3,246,042	-		GFF3183	0.28	-0.7
3,246,047	-		GFF3183	0.29	-0.6
3,246,049	+		GFF3183	0.29	-1.3
3,246,054	+		GFF3183	0.29	-0.7
3,246,054	+		GFF3183	0.29	-0.3
3,246,054	+		GFF3183	0.29	+1.0
3,246,057	-		GFF3183	0.30	-0.7
3,246,057	-		GFF3183	0.30	-0.2
3,246,057	-		GFF3183	0.30	+0.4
3,246,062	-		GFF3183	0.30	-0.9
3,246,062	-		GFF3183	0.30	+0.3
3,246,064	+		GFF3183	0.30	+0.8
3,246,066	+		GFF3183	0.31	-1.4
3,246,072	-		GFF3183	0.31	+0.1
3,246,083	-		GFF3183	0.32	-0.8
3,246,087	+		GFF3183	0.33	+0.5
3,246,087	-		GFF3183	0.33	-1.6
3,246,095	-		GFF3183	0.33	-2.2
3,246,113	+		GFF3183	0.35	+0.3
3,246,118	+		GFF3183	0.36	-1.6
3,246,121	-		GFF3183	0.36	-0.4
3,246,129	-		GFF3183	0.37	+0.7
3,246,179	+		GFF3183	0.42	+0.3
3,246,187	-		GFF3183	0.42	-1.3
3,246,201	+		GFF3183	0.44	+1.0
3,246,214	-		GFF3183	0.45	+1.4
3,246,214	-		GFF3183	0.45	-2.9
3,246,218	-		GFF3183	0.45	-0.2
3,246,235	+		GFF3183	0.47	+0.0
3,246,243	-		GFF3183	0.48	+0.9
3,246,249	+		GFF3183	0.48	-0.4
3,246,249	+		GFF3183	0.48	-0.7
3,246,259	+		GFF3183	0.49	-0.3
3,246,259	+		GFF3183	0.49	-0.8
3,246,267	-		GFF3183	0.50	-0.6
3,246,267	-		GFF3183	0.50	+0.4
3,246,284	-		GFF3183	0.52	-0.3
3,246,297	+		GFF3183	0.53	-0.7
3,246,297	+		GFF3183	0.53	-0.7
3,246,297	+		GFF3183	0.53	+0.7
3,246,297	+		GFF3183	0.53	-0.5
3,246,297	+		GFF3183	0.53	-1.8
3,246,305	-		GFF3183	0.54	-0.6
3,246,305	-		GFF3183	0.54	-1.7
3,246,305	-		GFF3183	0.54	-1.3
3,246,310	-		GFF3183	0.54	-1.3
3,246,311	+		GFF3183	0.55	+0.2
3,246,311	+		GFF3183	0.55	-0.6
3,246,311	+		GFF3183	0.55	+0.1
3,246,316	+		GFF3183	0.55	-1.4
3,246,316	+		GFF3183	0.55	-0.8
3,246,319	-		GFF3183	0.55	+0.6
3,246,319	-		GFF3183	0.55	-1.1
3,246,324	-		GFF3183	0.56	-1.1
3,246,324	-		GFF3183	0.56	+0.3
3,246,324	-		GFF3183	0.56	-2.1
3,246,324	-		GFF3183	0.56	-0.1
3,246,330	+		GFF3183	0.56	+1.2
3,246,330	+		GFF3183	0.56	-1.1
3,246,330	+		GFF3183	0.56	-0.3
3,246,330	+		GFF3183	0.56	-0.1
3,246,330	+		GFF3183	0.56	-1.3
3,246,330	+		GFF3183	0.56	-1.0
3,246,330	+		GFF3183	0.56	+0.9
3,246,330	+		GFF3183	0.56	+0.6
3,246,338	-		GFF3183	0.57	-2.7
3,246,338	-		GFF3183	0.57	+0.6
3,246,338	-		GFF3183	0.57	+0.3
3,246,338	-		GFF3183	0.57	-1.3
3,246,338	-		GFF3183	0.57	-0.2
3,246,338	-		GFF3183	0.57	-0.4
3,246,338	-		GFF3183	0.57	-0.9
3,246,338	-		GFF3183	0.57	+0.5
3,246,388	+		GFF3183	0.62	-0.2
3,246,388	+		GFF3183	0.62	+0.9
3,246,388	+		GFF3183	0.62	+0.2
3,246,388	+		GFF3183	0.62	-2.6
3,246,388	+		GFF3183	0.62	-1.4
3,246,396	-		GFF3183	0.63	-1.2
3,246,429	+		GFF3183	0.66	+0.3
3,246,429	+		GFF3183	0.66	-0.2
3,246,432	-		GFF3183	0.66	-0.3
3,246,437	-		GFF3183	0.67	-0.0
3,246,437	-		GFF3183	0.67	-0.2
3,246,506	+		GFF3183	0.74	+0.0
3,246,512	-		GFF3183	0.74	+0.3
3,246,520	+		GFF3183	0.75	-1.7
3,246,561	+		GFF3183	0.79	-0.4
3,246,569	-		GFF3183	0.80	-0.1
3,246,575	+		GFF3183	0.80	+0.4
3,246,575	+		GFF3183	0.80	-0.6
3,246,583	-		GFF3183	0.81	-2.2
3,246,583	-		GFF3183	0.81	+0.2
3,246,583	-		GFF3183	0.81	+1.2
3,246,585	+		GFF3183	0.81	+0.2
3,246,596	-		GFF3183	0.82	-1.1
3,246,596	-		GFF3183	0.82	-1.9
3,246,609	+		GFF3183	0.84	-2.1
3,246,609	+		GFF3183	0.84	+0.0
3,246,617	-		GFF3183	0.84	-0.2
3,246,617	-		GFF3183	0.84	-1.3
3,246,651	+		GFF3183	0.88	+0.2
3,246,691	-				-0.3
3,246,691	-				-0.2
3,246,696	-				+0.6
3,246,696	-				-0.4
3,246,701	+				+0.9
3,246,757	+				-0.4
3,246,757	+				-2.0
3,246,762	+				-0.6
3,246,762	+				-0.8
3,246,767	+				+0.4
3,246,767	+				+0.0
3,246,767	+				-3.1
3,246,767	+				+0.3
3,246,767	+				-0.1
3,246,767	+				-0.6
3,246,767	+				+0.3
3,246,770	-				-0.1
3,246,770	-				+0.6
3,246,770	-				-0.6
3,246,775	-				-0.2
3,246,775	-				+0.0
3,246,775	-				-0.7
3,246,775	-				-1.0
3,246,775	-				+1.0
3,246,775	-				-1.4
3,246,777	+				-0.8
3,246,777	+				-1.2
3,246,777	+				-2.0
3,246,777	+				-0.7
3,246,777	+				-1.5
3,246,777	+				-0.4
3,246,777	+				+0.8
3,246,785	-				-0.8
3,246,785	-				-0.3
3,246,785	-				-0.7
3,246,785	-				-0.7
3,246,785	-				-0.6
3,246,785	-				-0.4
3,246,785	-				+1.2
3,246,785	-				-0.6
3,246,786	+				+0.4
3,246,787	+				+0.5
3,246,790	-				-1.5
3,246,807	-				+0.1
3,246,941	+		GFF3184	0.16	-0.4
3,246,953	-		GFF3184	0.18	+1.1
3,247,002	+		GFF3184	0.29	-0.6
3,247,002	+		GFF3184	0.29	-0.8
3,247,002	+		GFF3184	0.29	+0.6
3,247,010	-		GFF3184	0.31	+1.7
3,247,010	-		GFF3184	0.31	+0.1
3,247,010	-		GFF3184	0.31	+0.0
3,247,010	-		GFF3184	0.31	-0.4
3,247,010	-		GFF3184	0.31	-0.1
3,247,094	-		GFF3184	0.50	-0.2
3,247,100	-		GFF3184	0.51	-0.3
3,247,108	+		GFF3184	0.53	+0.4
3,247,117	+		GFF3184	0.55	-1.4
3,247,121	+		GFF3184	0.56	-1.9
3,247,129	+		GFF3184	0.58	-0.1
3,247,129	+		GFF3184	0.58	-1.3
3,247,129	+		GFF3184	0.58	+0.8
3,247,129	+		GFF3184	0.58	-0.1
3,247,129	-		GFF3184	0.58	+0.2
3,247,131	+		GFF3184	0.58	+1.0
3,247,137	-		GFF3184	0.59	+0.1
3,247,137	-		GFF3184	0.59	+0.4
3,247,139	-		GFF3184	0.60	-0.2
3,247,139	-		GFF3184	0.60	-0.1
3,247,139	-		GFF3184	0.60	-1.4
3,247,141	+		GFF3184	0.60	+0.6
3,247,149	-		GFF3184	0.62	+0.1
3,247,149	-		GFF3184	0.62	+0.0
3,247,149	-		GFF3184	0.62	-0.2
3,247,149	-		GFF3184	0.62	+0.5
3,247,149	-		GFF3184	0.62	+0.3
3,247,149	-		GFF3184	0.62	+0.4
3,247,149	-		GFF3184	0.62	+0.4
3,247,149	-		GFF3184	0.62	-0.2
3,247,154	-		GFF3184	0.63	+1.4
3,247,158	-		GFF3184	0.64	-1.6
3,247,158	-		GFF3184	0.64	-1.6
3,247,160	+		GFF3184	0.64	-0.9
3,247,168	-		GFF3184	0.66	-0.0
3,247,197	-		GFF3184	0.73	+0.7
3,247,215	-		GFF3184	0.77	-0.4
3,247,225	+		GFF3184	0.79	-2.4
3,247,230	+		GFF3184	0.80	-0.8
3,247,230	+		GFF3184	0.80	-0.8
3,247,230	+		GFF3184	0.80	+0.5
3,247,231	+		GFF3184	0.80	+1.6
3,247,233	-		GFF3184	0.81	-0.7
3,247,233	-		GFF3184	0.81	-1.6
3,247,238	-		GFF3184	0.82	+0.1
3,247,239	-		GFF3184	0.82	-1.4
3,247,239	-		GFF3184	0.82	-0.3
3,247,239	-		GFF3184	0.82	+0.1
3,247,248	-		GFF3184	0.84	+0.8
3,247,254	+		GFF3184	0.85	-1.7
3,247,254	+		GFF3184	0.85	+1.4
3,247,254	+		GFF3184	0.85	+1.6
3,247,259	+		GFF3184	0.86	-1.3
3,247,259	+		GFF3184	0.86	+0.8
3,247,259	+		GFF3184	0.86	+0.3
3,247,262	-		GFF3184	0.87	+1.0
3,247,262	-		GFF3184	0.87	+0.1
3,247,262	-		GFF3184	0.87	-1.5
3,247,262	-		GFF3184	0.87	-0.2
3,247,262	-		GFF3184	0.87	-1.7
3,247,266	+		GFF3184	0.88	-3.1
3,247,268	+		GFF3184	0.88	-0.0
3,247,274	-		GFF3184	0.90	-0.2
3,247,305	+				-0.2
3,247,347	-				+0.1
3,247,359	+				-1.4
3,247,360	+				-1.0
3,247,360	+				-0.7
3,247,360	-				+0.9
3,247,367	+				-0.9
3,247,374	+				+0.3
3,247,399	+		GFF3185	0.23	-0.6
3,247,401	-		GFF3185	0.25	-0.2
3,247,409	-		GFF3185	0.32	-0.7
3,247,421	-		GFF3185	0.42	-0.1
3,247,467	-		GFF3185	0.80	+0.3
3,247,471	+		GFF3185	0.83	-0.2
3,247,472	-		GFF3185	0.84	+0.5
3,247,475	+		GFF3185	0.87	+0.9
3,247,482	+				+0.9
3,247,482	+				-1.0
3,247,482	+				+1.0
3,247,482	+				-0.0
3,247,482	+				-0.0
3,247,482	+				-2.0
3,247,482	+				-0.3
3,247,482	+				-0.7
3,247,482	+				+2.0
3,247,482	+				-0.2
3,247,488	-				+0.6
3,247,488	-				-0.1
3,247,490	-				+0.5
3,247,490	-				-1.2
3,247,490	-				+0.8
3,247,490	-				-0.4
3,247,490	-				-1.2
3,247,505	-				-1.2
3,247,529	+				+0.5
3,247,529	+				+0.9
3,247,544	+				+0.8
3,247,556	+				+0.0
3,247,561	+				+0.3
3,247,561	+				-0.2
3,247,561	+				+0.2
3,247,561	+				-0.8
3,247,566	+				-1.4
3,247,566	+				-0.1
3,247,571	+				+1.3
3,247,595	+				-0.2
3,247,610	-				-0.6
3,247,611	+				-1.2
3,247,611	+				+0.3
3,247,612	+				+0.0
3,247,612	+				-0.7
3,247,612	+				-1.2
3,247,612	+				-0.6
3,247,612	+				-1.0
3,247,612	+				+0.2
3,247,612	+				-1.0
3,247,613	+				+0.5
3,247,620	-				-1.0
3,247,620	-				-1.2
3,247,620	-				-0.1
3,247,620	-				-0.1
3,247,620	-				-1.7
3,247,620	-				-1.2
3,247,630	-				-0.3
3,247,639	-				-1.5
3,247,641	+				-0.6
3,247,716	+				-0.4
3,247,716	-				-0.8
3,247,735	+				+0.7
3,247,741	-				-1.8
3,247,748	+				-1.7
3,247,748	+				+0.0
3,247,748	+				-2.3
3,247,756	-				-0.5
3,247,758	+				-2.1
3,247,766	-				-1.9