Strain Fitness in Sphingobium sp. HT1-2 around GFF3113

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,183,708	-				+0.2
3,183,721	-				+1.2
3,183,734	+				-0.3
3,183,806	+				+1.2
3,183,808	+				-0.4
3,183,814	-				+0.5
3,183,814	-				-0.6
3,183,814	-				+0.5
3,183,814	-				+0.6
3,183,816	-		GFF3112	0.10	-0.9
3,183,816	-		GFF3112	0.10	-0.3
3,183,816	-		GFF3112	0.10	+0.2
3,183,818	+		GFF3112	0.10	-0.1
3,183,824	+		GFF3112	0.11	+0.4
3,183,826	-		GFF3112	0.11	-1.1
3,183,826	-		GFF3112	0.11	-0.8
3,183,832	-		GFF3112	0.12	-1.0
3,183,833	+		GFF3112	0.12	+0.8
3,183,855	+		GFF3112	0.15	-0.2
3,183,862	-		GFF3112	0.15	-0.4
3,183,877	+		GFF3112	0.17	-0.9
3,183,882	+		GFF3112	0.18	-0.1
3,183,882	+		GFF3112	0.18	-1.6
3,183,882	+		GFF3112	0.18	+1.0
3,183,902	+		GFF3112	0.20	+0.3
3,183,902	+		GFF3112	0.20	+0.1
3,183,902	+		GFF3112	0.20	-0.4
3,183,902	+		GFF3112	0.20	-0.2
3,183,902	+		GFF3112	0.20	+0.1
3,183,902	+		GFF3112	0.20	-0.6
3,183,902	+		GFF3112	0.20	-3.7
3,183,906	+		GFF3112	0.21	+2.0
3,183,907	+		GFF3112	0.21	-0.9
3,183,907	+		GFF3112	0.21	-0.4
3,183,907	+		GFF3112	0.21	-1.8
3,183,910	-		GFF3112	0.21	-1.3
3,183,910	-		GFF3112	0.21	+0.2
3,183,910	-		GFF3112	0.21	-2.9
3,183,914	-		GFF3112	0.21	+0.9
3,183,915	-		GFF3112	0.22	+0.0
3,183,923	+		GFF3112	0.22	+0.9
3,183,923	+		GFF3112	0.22	+0.6
3,183,933	+		GFF3112	0.24	-1.2
3,183,936	-		GFF3112	0.24	-1.2
3,183,940	+		GFF3112	0.24	+1.5
3,183,941	-		GFF3112	0.25	+0.0
3,183,962	-		GFF3112	0.27	+0.5
3,183,971	-		GFF3112	0.28	+0.0
3,183,982	-		GFF3112	0.29	-1.8
3,183,984	+		GFF3112	0.29	+0.3
3,183,984	+		GFF3112	0.29	-1.0
3,183,984	+		GFF3112	0.29	-0.3
3,183,984	+		GFF3112	0.29	-0.1
3,183,984	+		GFF3112	0.29	-0.2
3,183,984	+		GFF3112	0.29	+0.3
3,183,984	+		GFF3112	0.29	-0.4
3,183,984	+		GFF3112	0.29	-0.4
3,183,984	+		GFF3112	0.29	-1.1
3,183,984	+		GFF3112	0.29	-1.8
3,183,989	+		GFF3112	0.30	-2.8
3,183,992	-		GFF3112	0.30	+0.0
3,183,992	-		GFF3112	0.30	-0.0
3,183,992	-		GFF3112	0.30	-0.1
3,183,992	-		GFF3112	0.30	-0.1
3,183,992	-		GFF3112	0.30	-1.6
3,183,998	-		GFF3112	0.31	+0.4
3,184,009	+		GFF3112	0.32	-0.6
3,184,024	-		GFF3112	0.34	-0.9
3,184,027	+		GFF3112	0.34	-1.7
3,184,028	-		GFF3112	0.34	-0.1
3,184,034	-		GFF3112	0.35	+1.2
3,184,035	-		GFF3112	0.35	+1.5
3,184,088	-		GFF3112	0.41	-2.4
3,184,091	+		GFF3112	0.42	-0.0
3,184,091	+		GFF3112	0.42	-0.4
3,184,091	+		GFF3112	0.42	-1.3
3,184,093	-		GFF3112	0.42	-2.1
3,184,099	-		GFF3112	0.43	-0.1
3,184,137	-		GFF3112	0.47	+0.0
3,184,144	+		GFF3112	0.48	+0.9
3,184,144	+		GFF3112	0.48	-0.8
3,184,144	+		GFF3112	0.48	-0.8
3,184,144	+		GFF3112	0.48	-1.0
3,184,144	+		GFF3112	0.48	-1.7
3,184,145	+		GFF3112	0.48	+0.7
3,184,152	-		GFF3112	0.49	-0.2
3,184,152	-		GFF3112	0.49	-0.5
3,184,152	-		GFF3112	0.49	+0.9
3,184,157	-		GFF3112	0.49	-1.4
3,184,163	+		GFF3112	0.50	-1.2
3,184,163	+		GFF3112	0.50	-1.3
3,184,198	-		GFF3112	0.54	+0.8
3,184,201	-		GFF3112	0.54	+0.3
3,184,203	+		GFF3112	0.55	-0.3
3,184,227	+		GFF3112	0.57	-0.1
3,184,235	-		GFF3112	0.58	-1.3
3,184,235	-		GFF3112	0.58	-2.2
3,184,235	-		GFF3112	0.58	-0.6
3,184,238	-		GFF3112	0.59	-0.8
3,184,241	+		GFF3112	0.59	-1.3
3,184,247	+		GFF3112	0.60	-0.0
3,184,249	-		GFF3112	0.60	-1.8
3,184,249	-		GFF3112	0.60	-0.8
3,184,288	+		GFF3112	0.64	+0.3
3,184,298	-		GFF3112	0.65	+0.7
3,184,304	-		GFF3112	0.66	-0.2
3,184,306	-		GFF3112	0.66	+0.4
3,184,339	+		GFF3112	0.70	-1.2
3,184,357	-		GFF3112	0.72	-0.9
3,184,369	+		GFF3112	0.74	+0.8
3,184,371	+		GFF3112	0.74	-0.2
3,184,371	+		GFF3112	0.74	+1.5
3,184,371	+		GFF3112	0.74	+0.5
3,184,371	+		GFF3112	0.74	+0.6
3,184,379	+		GFF3112	0.75	-1.5
3,184,379	-		GFF3112	0.75	-2.6
3,184,389	+		GFF3112	0.76	-1.1
3,184,415	-		GFF3112	0.79	+1.0
3,184,420	-		GFF3112	0.79	-0.2
3,184,428	+		GFF3112	0.80	-0.8
3,184,432	-		GFF3112	0.81	+0.9
3,184,448	+		GFF3112	0.83	-0.5
3,184,456	-		GFF3112	0.84	-0.9
3,184,456	-		GFF3112	0.84	-1.1
3,184,473	+		GFF3112	0.85	-0.5
3,184,479	+		GFF3112	0.86	-0.3
3,184,479	+		GFF3112	0.86	-1.0
3,184,481	+		GFF3112	0.86	-0.0
3,184,481	-		GFF3112	0.86	+0.4
3,184,482	-		GFF3112	0.86	-0.0
3,184,483	+		GFF3112	0.87	-2.3
3,184,487	-		GFF3112	0.87	+0.3
3,184,493	+		GFF3112	0.88	-0.4
3,184,508	+		GFF3112	0.89	+1.3
3,184,538	-				-0.1
3,184,538	-				+0.1
3,184,585	+				-1.8
3,184,585	+				+0.7
3,184,585	+				-0.2
3,184,585	+				+0.3
3,184,585	+				+1.0
3,184,585	+				-0.9
3,184,591	-				+0.8
3,184,591	-				+0.3
3,184,593	+				+0.4
3,184,593	-				-1.6
3,184,593	-				-1.1
3,184,593	-				-0.6
3,184,610	+				+0.8
3,184,619	+				-2.7
3,184,683	+				-1.0
3,184,700	+				+1.3
3,184,727	+				+0.8
3,184,727	-				-0.4
3,184,753	+		GFF3113	0.11	+0.1
3,184,753	+		GFF3113	0.11	+1.3
3,184,776	-		GFF3113	0.16	-0.8
3,184,782	+		GFF3113	0.17	-0.2
3,184,785	-		GFF3113	0.17	-1.7
3,184,792	+		GFF3113	0.19	-0.2
3,184,792	+		GFF3113	0.19	+0.4
3,184,792	+		GFF3113	0.19	+0.8
3,184,792	+		GFF3113	0.19	-0.4
3,184,792	+		GFF3113	0.19	-1.6
3,184,792	+		GFF3113	0.19	+0.0
3,184,792	+		GFF3113	0.19	-1.6
3,184,800	-		GFF3113	0.21	+0.3
3,184,800	-		GFF3113	0.21	-1.5
3,184,800	-		GFF3113	0.21	+1.2
3,184,800	-		GFF3113	0.21	-1.2
3,184,800	-		GFF3113	0.21	+0.9
3,184,800	-		GFF3113	0.21	+0.0
3,184,811	+		GFF3113	0.23	+0.3
3,184,898	+		GFF3113	0.41	+1.1
3,184,907	-		GFF3113	0.43	-0.4
3,184,909	+		GFF3113	0.43	-0.6
3,184,919	+		GFF3113	0.45	-0.7
3,184,928	-		GFF3113	0.47	-0.0
3,184,928	-		GFF3113	0.47	-1.1
3,184,933	-		GFF3113	0.48	-0.3
3,184,964	-		GFF3113	0.54	-0.3
3,185,017	+		GFF3113	0.65	+0.8
3,185,026	+		GFF3113	0.67	+0.3
3,185,078	-		GFF3113	0.78	+0.3
3,185,078	-		GFF3113	0.78	+1.3
3,185,083	+		GFF3113	0.79	-1.6
3,185,101	+		GFF3113	0.83	+0.2
3,185,106	+		GFF3113	0.84	+0.6
3,185,109	-		GFF3113	0.84	-1.9
3,185,109	-		GFF3113	0.84	-0.4
3,185,109	-		GFF3113	0.84	+1.3
3,185,114	-		GFF3113	0.85	+0.4
3,185,114	-		GFF3113	0.85	+0.8
3,185,120	+		GFF3113	0.86	-0.9
3,185,120	+		GFF3113	0.86	-1.3
3,185,120	+		GFF3113	0.86	-0.4
3,185,120	+		GFF3113	0.86	-1.4
3,185,128	-		GFF3113	0.88	-0.6
3,185,128	-		GFF3113	0.88	+0.2
3,185,128	-		GFF3113	0.88	-0.3
3,185,128	-		GFF3113	0.88	-1.1
3,185,145	-				-0.3
3,185,145	-				+1.1
3,185,147	+				-0.2
3,185,149	+				-0.9
3,185,155	-				-0.8
3,185,176	-				+1.3
3,185,191	+				-0.3
3,185,203	+				+1.3
3,185,203	+				+0.4
3,185,203	+				-0.1
3,185,203	+				-0.5
3,185,203	+				-1.8
3,185,203	+				+0.8
3,185,211	-				+0.0
3,185,211	-				-2.1
3,185,211	-				+0.3
3,185,211	-				+0.2
3,185,211	-				-0.3
3,185,211	-				-0.2
3,185,229	+				+0.3
3,185,229	+				-1.7
3,185,237	-				-0.7
3,185,259	+				-0.9
3,185,262	-				-0.2
3,185,269	+				-2.2
3,185,304	-				-0.2
3,185,344	+				-3.3
3,185,347	-				-0.9
3,185,375	-				+0.6
3,185,377	+				+0.1
3,185,377	+				+0.8
3,185,382	+				+0.5
3,185,382	+				-1.4
3,185,382	+				+2.0
3,185,390	-				-0.2
3,185,390	-				-0.2
3,185,403	-				+0.6
3,185,421	+				-1.1
3,185,421	+				+0.4
3,185,426	+				-1.4
3,185,427	+				+0.2
3,185,434	-				-0.5
3,185,434	-				-1.3
3,185,435	-				-1.1
3,185,450	+		GFF3114	0.11	-2.4
3,185,463	-		GFF3114	0.11	+0.1
3,185,468	-		GFF3114	0.11	+0.2
3,185,494	+		GFF3114	0.13	+0.5
3,185,502	-		GFF3114	0.13	-1.7
3,185,503	+		GFF3114	0.13	+0.2
3,185,515	+		GFF3114	0.14	-1.0
3,185,524	+		GFF3114	0.14	-2.4
3,185,543	-		GFF3114	0.15	-0.0
3,185,551	-		GFF3114	0.15	-0.7
3,185,574	+		GFF3114	0.17	-0.4
3,185,579	+		GFF3114	0.17	+0.3
3,185,582	-		GFF3114	0.17	-1.7
3,185,588	+		GFF3114	0.17	+1.4
3,185,592	-		GFF3114	0.17	-0.1
3,185,592	-		GFF3114	0.17	+0.8
3,185,592	-		GFF3114	0.17	+0.2
3,185,618	-		GFF3114	0.19	+1.0
3,185,629	+		GFF3114	0.19	-0.0
3,185,629	+		GFF3114	0.19	-1.9
3,185,637	-		GFF3114	0.20	+0.4
3,185,706	-		GFF3114	0.23	+0.8
3,185,742	-		GFF3114	0.25	+0.3
3,185,761	-		GFF3114	0.26	-1.3
3,185,768	+		GFF3114	0.26	-2.6
3,185,815	+		GFF3114	0.28	-1.1
3,185,815	+		GFF3114	0.28	+1.7
3,185,821	-		GFF3114	0.28	+0.9
3,185,823	-		GFF3114	0.29	-0.2
3,185,823	-		GFF3114	0.29	+0.2
3,185,823	-		GFF3114	0.29	+0.5
3,185,909	-		GFF3114	0.33	-0.4
3,185,914	+		GFF3114	0.33	+0.7
3,185,914	+		GFF3114	0.33	-0.5
3,185,914	+		GFF3114	0.33	+0.6
3,185,919	-		GFF3114	0.33	+0.9
3,185,922	-		GFF3114	0.33	-0.3
3,185,922	-		GFF3114	0.33	+0.0
3,185,922	-		GFF3114	0.33	-0.2
3,185,927	+		GFF3114	0.34	-0.0
3,185,933	+		GFF3114	0.34	+0.5
3,185,964	-		GFF3114	0.35	-1.2
3,185,977	-		GFF3114	0.36	-0.0
3,186,017	-		GFF3114	0.38	+0.8
3,186,033	-		GFF3114	0.39	-0.1
3,186,038	-		GFF3114	0.39	-0.6
3,186,038	-		GFF3114	0.39	+0.9
3,186,060	+		GFF3114	0.40	+0.7
3,186,068	-		GFF3114	0.40	+0.3
3,186,090	-		GFF3114	0.41	-0.2
3,186,091	+		GFF3114	0.41	+0.4
3,186,099	-		GFF3114	0.42	-0.2
3,186,099	-		GFF3114	0.42	-0.2
3,186,136	-		GFF3114	0.44	+0.7
3,186,164	+		GFF3114	0.45	+0.3
3,186,165	+		GFF3114	0.45	-0.2
3,186,165	+		GFF3114	0.45	-0.1
3,186,165	+		GFF3114	0.45	+0.5
3,186,165	+		GFF3114	0.45	+0.6
3,186,165	+		GFF3114	0.45	-0.7
3,186,167	-		GFF3114	0.45	-0.3
3,186,172	-		GFF3114	0.45	-0.2
3,186,172	-		GFF3114	0.45	+0.4
3,186,173	-		GFF3114	0.45	-1.9
3,186,173	-		GFF3114	0.45	+0.3