Strain Fitness in Sphingobium sp. HT1-2 around GFF3096

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,159,979	+				+0.5
3,159,979	+				-0.0
3,159,979	+				-0.7
3,159,979	+				-1.4
3,159,979	+				+0.3
3,159,987	-				-1.0
3,159,987	-				+1.3
3,159,987	-				-2.2
3,159,987	-				+1.0
3,159,987	-				-1.1
3,159,987	-				-1.7
3,159,987	-				-1.2
3,159,987	-				+0.4
3,159,987	-				+1.7
3,159,987	-				-0.1
3,159,987	-				-0.8
3,159,987	-				+1.0
3,159,987	-				-0.8
3,160,047	+				+0.8
3,160,047	-				-2.3
3,160,075	-				+1.3
3,160,084	+				+0.2
3,160,084	+				-0.1
3,160,084	+				+0.1
3,160,084	+				-1.1
3,160,097	-				+1.0
3,160,107	-				-3.0
3,160,137	+				+0.5
3,160,137	+				+0.9
3,160,145	-				-1.8
3,160,145	-				-1.6
3,160,161	+				+0.7
3,160,161	+				-0.4
3,160,161	+				+0.3
3,160,161	+				+0.2
3,160,161	+				-0.6
3,160,161	+				-0.5
3,160,161	+				-1.3
3,160,167	+				+0.1
3,160,167	+				+0.8
3,160,169	-				-0.8
3,160,169	-				-1.0
3,160,169	-				-1.2
3,160,170	-				+0.6
3,160,170	-				-1.2
3,160,175	-				-1.6
3,160,181	+				-0.5
3,160,181	+				+0.6
3,160,181	+				-1.3
3,160,189	-				-0.7
3,160,189	-				+0.7
3,160,191	+				+0.4
3,160,194	-				-0.7
3,160,194	-				+1.5
3,160,210	+				-1.4
3,160,210	+				-2.1
3,160,210	+				+0.7
3,160,213	-				+0.8
3,160,218	-				-0.2
3,160,218	-				+0.6
3,160,218	-				+0.2
3,160,229	+				-1.7
3,160,232	+				-2.0
3,160,240	-				-0.2
3,160,252	+				+0.2
3,160,252	+				-0.1
3,160,252	+				+0.5
3,160,252	+				+0.3
3,160,253	+				-0.6
3,160,260	-				-0.2
3,160,260	-				-0.2
3,160,260	-				-0.6
3,160,260	-				-1.2
3,160,260	-				-1.3
3,160,271	-				-1.1
3,160,278	-				-0.8
3,160,283	-				+0.2
3,160,320	-				-0.7
3,160,322	+				+0.6
3,160,325	-				+0.1
3,160,340	+		GFF3096	0.10	+0.0
3,160,356	-		GFF3096	0.11	-0.7
3,160,365	+		GFF3096	0.11	-0.3
3,160,368	-		GFF3096	0.11	+0.1
3,160,385	+		GFF3096	0.12	-1.4
3,160,390	+		GFF3096	0.12	+0.8
3,160,390	+		GFF3096	0.12	-0.3
3,160,390	+		GFF3096	0.12	-0.4
3,160,390	+		GFF3096	0.12	+0.7
3,160,390	+		GFF3096	0.12	-0.4
3,160,390	+		GFF3096	0.12	-0.1
3,160,390	+		GFF3096	0.12	-1.3
3,160,393	-		GFF3096	0.12	-0.1
3,160,393	-		GFF3096	0.12	-1.8
3,160,395	+		GFF3096	0.13	-1.0
3,160,398	-		GFF3096	0.13	-0.7
3,160,398	-		GFF3096	0.13	-0.3
3,160,398	-		GFF3096	0.13	-0.8
3,160,398	-		GFF3096	0.13	-0.7
3,160,398	-		GFF3096	0.13	+1.1
3,160,398	-		GFF3096	0.13	-1.4
3,160,403	-		GFF3096	0.13	-0.1
3,160,420	-		GFF3096	0.14	-1.2
3,160,431	-		GFF3096	0.14	+0.0
3,160,433	+		GFF3096	0.14	+0.4
3,160,433	+		GFF3096	0.14	-0.7
3,160,433	+		GFF3096	0.14	-1.9
3,160,433	+		GFF3096	0.14	-0.4
3,160,441	-		GFF3096	0.15	-1.1
3,160,446	-		GFF3096	0.15	-1.9
3,160,451	-		GFF3096	0.15	-1.1
3,160,475	+		GFF3096	0.16	-1.6
3,160,495	+		GFF3096	0.17	+0.0
3,160,503	-		GFF3096	0.18	-1.6
3,160,513	-		GFF3096	0.18	-0.5
3,160,531	+		GFF3096	0.19	+1.1
3,160,539	-		GFF3096	0.19	+1.8
3,160,553	+		GFF3096	0.20	-0.1
3,160,555	+		GFF3096	0.20	-1.8
3,160,561	-		GFF3096	0.20	+1.3
3,160,563	+		GFF3096	0.20	-0.7
3,160,568	+		GFF3096	0.21	-1.1
3,160,568	+		GFF3096	0.21	-2.1
3,160,576	-		GFF3096	0.21	-0.3
3,160,576	-		GFF3096	0.21	+0.3
3,160,599	-		GFF3096	0.22	+0.7
3,160,599	-		GFF3096	0.22	-0.6
3,160,601	+		GFF3096	0.22	+0.4
3,160,606	+		GFF3096	0.22	-1.4
3,160,608	-		GFF3096	0.22	+1.0
3,160,614	+		GFF3096	0.23	+0.1
3,160,614	+		GFF3096	0.23	-1.2
3,160,614	+		GFF3096	0.23	-0.3
3,160,617	-		GFF3096	0.23	-0.6
3,160,622	-		GFF3096	0.23	-0.7
3,160,625	+		GFF3096	0.23	+0.4
3,160,630	+		GFF3096	0.23	-1.2
3,160,633	-		GFF3096	0.24	+0.7
3,160,635	+		GFF3096	0.24	-0.5
3,160,643	-		GFF3096	0.24	-1.5
3,160,643	-		GFF3096	0.24	+0.3
3,160,647	+		GFF3096	0.24	-0.6
3,160,647	+		GFF3096	0.24	+1.0
3,160,647	+		GFF3096	0.24	-0.9
3,160,647	+		GFF3096	0.24	+0.7
3,160,647	+		GFF3096	0.24	-0.1
3,160,647	+		GFF3096	0.24	+0.3
3,160,647	+		GFF3096	0.24	-1.8
3,160,647	+		GFF3096	0.24	-0.5
3,160,647	+		GFF3096	0.24	-1.0
3,160,653	+		GFF3096	0.25	-0.6
3,160,654	+		GFF3096	0.25	+0.3
3,160,655	-		GFF3096	0.25	-2.4
3,160,655	-		GFF3096	0.25	-0.4
3,160,655	-		GFF3096	0.25	+2.4
3,160,655	-		GFF3096	0.25	+0.9
3,160,655	-		GFF3096	0.25	-0.3
3,160,655	-		GFF3096	0.25	-0.7
3,160,655	-		GFF3096	0.25	+0.4
3,160,655	-		GFF3096	0.25	-1.3
3,160,655	-		GFF3096	0.25	-1.7
3,160,655	-		GFF3096	0.25	-0.1
3,160,655	-		GFF3096	0.25	-0.6
3,160,655	-		GFF3096	0.25	-0.3
3,160,655	-		GFF3096	0.25	-0.5
3,160,658	+		GFF3096	0.25	-0.1
3,160,661	-		GFF3096	0.25	+0.3
3,160,661	-		GFF3096	0.25	+1.1
3,160,661	-		GFF3096	0.25	+0.4
3,160,672	+		GFF3096	0.25	-0.4
3,160,678	-		GFF3096	0.26	-2.2
3,160,680	-		GFF3096	0.26	+0.4
3,160,680	-		GFF3096	0.26	-0.6
3,160,680	-		GFF3096	0.26	-2.0
3,160,680	-		GFF3096	0.26	+0.5
3,160,716	+		GFF3096	0.27	+0.3
3,160,716	+		GFF3096	0.27	+0.6
3,160,738	-		GFF3096	0.28	-0.9
3,160,741	-		GFF3096	0.29	+0.3
3,160,741	-		GFF3096	0.29	+0.3
3,160,752	+		GFF3096	0.29	-0.4
3,160,765	-		GFF3096	0.30	+1.1
3,160,771	-		GFF3096	0.30	+0.6
3,160,773	+		GFF3096	0.30	+0.1
3,160,773	+		GFF3096	0.30	+0.3
3,160,781	-		GFF3096	0.30	-1.3
3,160,795	-		GFF3096	0.31	-1.3
3,160,818	+		GFF3096	0.32	-1.0
3,160,826	-		GFF3096	0.33	-1.8
3,160,849	+		GFF3096	0.34	-0.4
3,160,849	+		GFF3096	0.34	-2.3
3,160,857	-		GFF3096	0.34	+0.4
3,160,857	-		GFF3096	0.34	+0.2
3,160,867	+		GFF3096	0.34	-1.1
3,160,867	+		GFF3096	0.34	-1.9
3,160,873	+		GFF3096	0.35	+0.5
3,160,882	+		GFF3096	0.35	+0.3
3,160,883	+		GFF3096	0.35	+1.1
3,160,891	-		GFF3096	0.36	-0.1
3,160,898	-		GFF3096	0.36	-0.8
3,160,938	+		GFF3096	0.38	+0.6
3,160,938	+		GFF3096	0.38	-1.1
3,160,938	+		GFF3096	0.38	-1.7
3,160,938	+		GFF3096	0.38	-0.0
3,160,938	+		GFF3096	0.38	+0.4
3,160,938	+		GFF3096	0.38	-0.2
3,160,938	+		GFF3096	0.38	-0.6
3,160,938	+		GFF3096	0.38	+0.8
3,160,946	-		GFF3096	0.38	-0.4
3,160,946	-		GFF3096	0.38	-1.7
3,160,946	-		GFF3096	0.38	+0.9
3,160,946	-		GFF3096	0.38	-2.0
3,160,969	+		GFF3096	0.39	+1.0
3,160,969	+		GFF3096	0.39	-2.4
3,160,977	-		GFF3096	0.40	-2.6
3,160,977	-		GFF3096	0.40	+0.3
3,160,977	-		GFF3096	0.40	-0.6
3,160,985	+		GFF3096	0.40	+0.3
3,161,033	+		GFF3096	0.42	-2.3
3,161,047	+		GFF3096	0.43	-2.1
3,161,051	+		GFF3096	0.43	-0.7
3,161,051	+		GFF3096	0.43	+0.1
3,161,051	+		GFF3096	0.43	-0.3
3,161,051	+		GFF3096	0.43	+0.7
3,161,051	+		GFF3096	0.43	+1.4
3,161,059	-		GFF3096	0.43	+0.3
3,161,059	-		GFF3096	0.43	+0.0
3,161,069	-		GFF3096	0.44	-1.9
3,161,088	-		GFF3096	0.45	-0.1
3,161,124	-		GFF3096	0.46	-0.5
3,161,147	+		GFF3096	0.47	-0.3
3,161,155	+		GFF3096	0.48	+0.0
3,161,163	-		GFF3096	0.48	-0.1
3,161,173	+		GFF3096	0.49	-0.4
3,161,184	+		GFF3096	0.49	+0.4
3,161,192	-		GFF3096	0.49	-0.2
3,161,201	+		GFF3096	0.50	+0.4
3,161,204	-		GFF3096	0.50	-1.6
3,161,204	-		GFF3096	0.50	+0.4
3,161,204	-		GFF3096	0.50	-0.7
3,161,209	-		GFF3096	0.50	+0.3
3,161,219	-		GFF3096	0.51	-2.3
3,161,231	+		GFF3096	0.51	+1.4
3,161,235	+		GFF3096	0.51	+0.2
3,161,235	+		GFF3096	0.51	+0.9
3,161,236	+		GFF3096	0.52	+0.3
3,161,239	-		GFF3096	0.52	+0.3
3,161,244	-		GFF3096	0.52	+0.6
3,161,244	-		GFF3096	0.52	-0.3
3,161,245	+		GFF3096	0.52	+0.9
3,161,255	+		GFF3096	0.52	-1.3
3,161,263	-		GFF3096	0.53	-0.5
3,161,264	+		GFF3096	0.53	-0.9
3,161,264	+		GFF3096	0.53	+0.5
3,161,273	+		GFF3096	0.53	-0.5
3,161,331	+		GFF3096	0.56	-0.1
3,161,334	-		GFF3096	0.56	-0.4
3,161,334	-		GFF3096	0.56	-0.7
3,161,339	+		GFF3096	0.56	+1.3
3,161,339	+		GFF3096	0.56	-1.6
3,161,344	+		GFF3096	0.57	-0.8
3,161,352	-		GFF3096	0.57	-2.8
3,161,357	+		GFF3096	0.57	-0.3
3,161,357	-		GFF3096	0.57	-1.3
3,161,367	+		GFF3096	0.58	+1.3
3,161,369	+		GFF3096	0.58	-2.6
3,161,369	+		GFF3096	0.58	+2.0
3,161,369	+		GFF3096	0.58	-1.1
3,161,377	-		GFF3096	0.58	-2.4
3,161,386	-		GFF3096	0.58	-1.6
3,161,392	-		GFF3096	0.59	-1.1
3,161,419	-		GFF3096	0.60	-1.6
3,161,432	+		GFF3096	0.61	-0.1
3,161,432	+		GFF3096	0.61	-0.3
3,161,432	+		GFF3096	0.61	-1.6
3,161,432	+		GFF3096	0.61	-1.6
3,161,432	+		GFF3096	0.61	-0.3
3,161,432	+		GFF3096	0.61	+0.4
3,161,432	+		GFF3096	0.61	+0.0
3,161,440	-		GFF3096	0.61	+0.6
3,161,440	-		GFF3096	0.61	-1.8
3,161,440	-		GFF3096	0.61	-0.1
3,161,440	-		GFF3096	0.61	+0.4
3,161,440	-		GFF3096	0.61	-0.2
3,161,440	-		GFF3096	0.61	-0.8
3,161,440	-		GFF3096	0.61	+0.7
3,161,442	-		GFF3096	0.61	-2.3
3,161,444	-		GFF3096	0.61	+1.6
3,161,464	-		GFF3096	0.62	-0.6
3,161,464	-		GFF3096	0.62	-1.1
3,161,465	+		GFF3096	0.62	-1.9
3,161,484	+		GFF3096	0.63	-2.0
3,161,492	+		GFF3096	0.63	+0.0
3,161,494	+		GFF3096	0.63	+0.4
3,161,512	-		GFF3096	0.64	-0.3
3,161,542	+		GFF3096	0.66	-1.0
3,161,542	+		GFF3096	0.66	-1.2
3,161,542	+		GFF3096	0.66	+1.1
3,161,543	+		GFF3096	0.66	-0.2
3,161,543	+		GFF3096	0.66	-0.5
3,161,543	+		GFF3096	0.66	+0.0
3,161,543	+		GFF3096	0.66	-0.0
3,161,543	+		GFF3096	0.66	-1.2
3,161,543	+		GFF3096	0.66	-0.3
3,161,550	-		GFF3096	0.66	-0.7
3,161,551	-		GFF3096	0.66	+0.1
3,161,551	-		GFF3096	0.66	-0.2
3,161,551	-		GFF3096	0.66	+0.2
3,161,551	-		GFF3096	0.66	-1.4
3,161,551	-		GFF3096	0.66	-1.2
3,161,560	+		GFF3096	0.67	+0.4
3,161,587	-		GFF3096	0.68	-1.2
3,161,601	+		GFF3096	0.68	+0.4
3,161,601	+		GFF3096	0.68	-1.9
3,161,601	+		GFF3096	0.68	-0.5
3,161,608	+		GFF3096	0.69	+0.6
3,161,609	-		GFF3096	0.69	-0.0
3,161,609	-		GFF3096	0.69	+0.9
3,161,680	+		GFF3096	0.72	-0.7
3,161,715	+		GFF3096	0.74	-0.7
3,161,715	+		GFF3096	0.74	+0.8
3,161,719	+		GFF3096	0.74	+1.0
3,161,719	+		GFF3096	0.74	-0.3
3,161,720	+		GFF3096	0.74	+0.2
3,161,728	-		GFF3096	0.74	-0.4
3,161,737	+		GFF3096	0.75	-0.1
3,161,740	-		GFF3096	0.75	+0.7
3,161,745	-		GFF3096	0.75	+0.2
3,161,770	+		GFF3096	0.76	-1.1
3,161,802	+		GFF3096	0.78	-1.5
3,161,802	+		GFF3096	0.78	-0.4
3,161,802	+		GFF3096	0.78	-1.7
3,161,809	+		GFF3096	0.78	+0.3
3,161,809	+		GFF3096	0.78	-2.1
3,161,809	+		GFF3096	0.78	-1.4
3,161,809	+		GFF3096	0.78	-0.6
3,161,810	-		GFF3096	0.78	-0.8
3,161,815	+		GFF3096	0.78	-0.7
3,161,817	-		GFF3096	0.78	+0.1
3,161,821	+		GFF3096	0.79	-0.7
3,161,823	-		GFF3096	0.79	-0.3
3,161,823	-		GFF3096	0.79	-1.1
3,161,829	-		GFF3096	0.79	-1.7
3,161,831	+		GFF3096	0.79	+0.1
3,161,831	+		GFF3096	0.79	+1.3
3,161,831	+		GFF3096	0.79	-1.6
3,161,831	+		GFF3096	0.79	-0.0
3,161,841	+		GFF3096	0.80	-1.6
3,161,867	+		GFF3096	0.81	+1.0
3,161,886	+		GFF3096	0.82	+1.6
3,161,924	+		GFF3096	0.83	-0.7
3,161,924	+		GFF3096	0.83	-0.2
3,161,929	-		GFF3096	0.84	-0.6
3,161,975	+		GFF3096	0.86	+0.5
3,161,975	+		GFF3096	0.86	-0.4
3,161,975	+		GFF3096	0.86	-0.7
3,161,975	+		GFF3096	0.86	-1.6
3,161,976	-		GFF3096	0.86	-0.5
3,161,983	-		GFF3096	0.86	+0.3
3,161,992	-		GFF3096	0.87	+0.1
3,161,992	-		GFF3096	0.87	-0.1
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