Strain Fitness in Sphingobium sp. HT1-2 around GFF3038

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,112,656	-		GFF3037	0.65	-1.0
3,112,656	-		GFF3037	0.65	-0.6
3,112,667	-		GFF3037	0.65	-0.2
3,112,683	-		GFF3037	0.66	-0.6
3,112,698	-		GFF3037	0.66	-1.6
3,112,705	-		GFF3037	0.67	+0.1
3,112,717	+		GFF3037	0.67	-0.7
3,112,717	+		GFF3037	0.67	-0.6
3,112,725	-		GFF3037	0.67	-2.1
3,112,725	-		GFF3037	0.67	+0.0
3,112,741	+		GFF3037	0.68	-0.1
3,112,770	-		GFF3037	0.69	+0.5
3,112,778	-		GFF3037	0.70	+1.0
3,112,781	+		GFF3037	0.70	+1.1
3,112,781	+		GFF3037	0.70	-0.2
3,112,781	+		GFF3037	0.70	-1.3
3,112,789	+		GFF3037	0.70	+1.8
3,112,789	+		GFF3037	0.70	-0.6
3,112,789	-		GFF3037	0.70	+0.3
3,112,797	-		GFF3037	0.70	+0.3
3,112,803	+		GFF3037	0.71	+1.0
3,112,804	+		GFF3037	0.71	-0.0
3,112,812	-		GFF3037	0.71	-0.3
3,112,850	+		GFF3037	0.73	-1.2
3,112,861	+		GFF3037	0.73	-1.0
3,112,861	+		GFF3037	0.73	-1.1
3,112,864	-		GFF3037	0.73	-0.6
3,112,875	-		GFF3037	0.74	+0.3
3,112,877	-		GFF3037	0.74	+0.0
3,112,903	+		GFF3037	0.75	+0.0
3,112,903	+		GFF3037	0.75	-0.4
3,112,906	-		GFF3037	0.75	-0.8
3,112,907	+		GFF3037	0.75	+0.5
3,112,908	+		GFF3037	0.75	-0.1
3,112,917	-		GFF3037	0.75	+1.0
3,112,919	+		GFF3037	0.76	-0.4
3,112,919	+		GFF3037	0.76	+0.8
3,112,921	-		GFF3037	0.76	-0.2
3,112,921	-		GFF3037	0.76	+0.5
3,112,921	-		GFF3037	0.76	-1.7
3,112,927	-		GFF3037	0.76	+0.1
3,112,927	-		GFF3037	0.76	+0.8
3,112,927	-		GFF3037	0.76	+0.0
3,112,927	-		GFF3037	0.76	-2.1
3,112,953	+		GFF3037	0.77	-0.1
3,112,953	+		GFF3037	0.77	-1.2
3,112,963	+		GFF3037	0.77	-0.1
3,112,996	-		GFF3037	0.79	+1.1
3,112,997	-		GFF3037	0.79	+0.5
3,113,010	+		GFF3037	0.79	-1.6
3,113,010	+		GFF3037	0.79	-1.7
3,113,010	+		GFF3037	0.79	-0.4
3,113,010	+		GFF3037	0.79	+1.1
3,113,010	+		GFF3037	0.79	-1.6
3,113,016	-		GFF3037	0.80	-0.5
3,113,018	-		GFF3037	0.80	-0.3
3,113,018	-		GFF3037	0.80	+1.3
3,113,018	-		GFF3037	0.80	-0.3
3,113,018	-		GFF3037	0.80	+0.6
3,113,026	-		GFF3037	0.80	+0.5
3,113,041	+		GFF3037	0.81	-1.7
3,113,063	+		GFF3037	0.81	-3.1
3,113,066	-		GFF3037	0.82	-0.4
3,113,066	-		GFF3037	0.82	-0.0
3,113,066	-		GFF3037	0.82	+1.0
3,113,066	-		GFF3037	0.82	+0.1
3,113,071	-		GFF3037	0.82	-2.1
3,113,083	-		GFF3037	0.82	+0.4
3,113,097	-		GFF3037	0.83	+0.1
3,113,097	-		GFF3037	0.83	+0.4
3,113,108	-		GFF3037	0.83	-0.6
3,113,159	-		GFF3037	0.85	+0.1
3,113,161	+		GFF3037	0.86	+0.0
3,113,163	+		GFF3037	0.86	+1.1
3,113,198	+		GFF3037	0.87	-0.3
3,113,198	+		GFF3037	0.87	-1.2
3,113,198	+		GFF3037	0.87	+0.5
3,113,206	-		GFF3037	0.87	+0.2
3,113,206	-		GFF3037	0.87	+1.1
3,113,206	-		GFF3037	0.87	-0.3
3,113,206	-		GFF3037	0.87	+0.7
3,113,206	-		GFF3037	0.87	+0.9
3,113,218	+		GFF3037	0.88	-1.0
3,113,246	-		GFF3037	0.89	+0.8
3,113,250	+		GFF3037	0.89	-0.9
3,113,250	-		GFF3037	0.89	-0.2
3,113,252	+		GFF3037	0.89	-1.2
3,113,264	+		GFF3037	0.90	+0.4
3,113,266	+		GFF3037	0.90	+0.8
3,113,266	-		GFF3037	0.90	-1.3
3,113,272	-				+0.4
3,113,273	-				-0.2
3,113,276	-				+0.1
3,113,289	-				-1.7
3,113,297	-				-0.8
3,113,297	-				+0.0
3,113,297	-				-0.3
3,113,297	-				-2.3
3,113,297	-				-1.4
3,113,297	-				+0.3
3,113,307	-				+0.3
3,113,307	-				-1.6
3,113,307	-				+0.4
3,113,316	-				+0.3
3,113,357	+				-1.0
3,113,358	-				-1.6
3,113,364	+				+1.0
3,113,381	-				-0.7
3,113,383	+				-0.4
3,113,383	+				+0.0
3,113,389	-				-0.5
3,113,391	-				-1.6
3,113,448	+				+1.5
3,113,448	+				-1.7
3,113,453	+				+0.1
3,113,454	-				+0.7
3,113,454	-				-1.2
3,113,456	-				-0.3
3,113,456	-				+0.0
3,113,461	-				-0.6
3,113,476	-				+1.1
3,113,487	+				-0.6
3,113,504	+				-1.0
3,113,504	+				-1.3
3,113,505	+				-1.4
3,113,505	+				+0.1
3,113,512	-				+0.9
3,113,512	-				-1.6
3,113,512	-				+0.0
3,113,512	-				-2.1
3,113,512	-				-1.2
3,113,513	-				+0.9
3,113,528	-				+0.8
3,113,535	-				-0.9
3,113,626	+				-0.3
3,113,648	+				+0.3
3,113,648	+				-0.0
3,113,648	+				-1.7
3,113,648	+				-1.2
3,113,648	+				+0.2
3,113,648	+				-0.6
3,113,648	+				-1.6
3,113,648	+				+0.7
3,113,648	+				+0.5
3,113,648	+				+0.7
3,113,648	+				-0.8
3,113,648	+				+0.3
3,113,648	+				-1.6
3,113,648	+				-0.7
3,113,648	+				-1.5
3,113,648	+				-0.8
3,113,681	+		GFF3038	0.15	+0.5
3,113,682	-		GFF3038	0.15	+0.1
3,113,689	-		GFF3038	0.19	-0.7
3,113,689	-		GFF3038	0.19	-0.4
3,113,694	+		GFF3038	0.21	-1.3
3,113,702	-		GFF3038	0.25	-1.1
3,113,702	-		GFF3038	0.25	-0.6
3,113,704	+		GFF3038	0.26	-1.3
3,113,710	-		GFF3038	0.29	-2.4
3,113,711	+		GFF3038	0.29	-0.1
3,113,712	-		GFF3038	0.30	-0.5
3,113,712	-		GFF3038	0.30	-0.2
3,113,717	+		GFF3038	0.32	+0.2
3,113,719	+		GFF3038	0.33	-0.7
3,113,719	+		GFF3038	0.33	+0.3
3,113,720	-		GFF3038	0.34	-1.1
3,113,720	-		GFF3038	0.34	+0.0
3,113,727	-		GFF3038	0.37	+0.1
3,113,727	-		GFF3038	0.37	-2.8
3,113,729	-		GFF3038	0.38	-0.9
3,113,752	+		GFF3038	0.50	-1.4
3,113,764	+		GFF3038	0.55	-1.0
3,113,772	-		GFF3038	0.59	+0.3
3,113,906	+				+0.3
3,113,914	-				-0.2
3,113,914	-				-0.3
3,113,940	-				-2.8
3,113,965	+				+0.0
3,113,965	+				-0.8
3,113,973	-				+1.3
3,113,978	+				-0.1
3,113,978	+				-1.6
3,113,983	+				+0.2
3,114,008	-				+0.0
3,114,008	-				-0.6
3,114,030	+				-0.1
3,114,057	+				-0.7
3,114,076	+				-0.5
3,114,077	+				-1.7
3,114,077	+				+0.5
3,114,077	+				-1.5
3,114,085	-				+0.6
3,114,085	-				-0.1
3,114,085	-				-1.8
3,114,087	+				-0.4
3,114,095	-				-0.1
3,114,095	-				-0.1
3,114,095	-				-0.1
3,114,102	-				-2.1
3,114,102	-				+0.7
3,114,113	+				-1.7
3,114,129	+				+0.4
3,114,136	+				-1.5
3,114,136	-				-0.3
3,114,136	-				+0.3
3,114,137	-				-1.0
3,114,144	+				+0.0
3,114,158	+				+0.6
3,114,183	+				-0.2
3,114,183	+				-2.1
3,114,183	+				-0.6
3,114,183	+				+0.3
3,114,183	+				-0.9
3,114,191	-				+0.0
3,114,191	-				+0.4
3,114,191	-				-1.2
3,114,192	-				-2.1
3,114,203	+		GFF3039	0.10	-0.5
3,114,203	+		GFF3039	0.10	-1.3
3,114,211	-		GFF3039	0.11	+0.6
3,114,216	+		GFF3039	0.11	+0.6
3,114,224	-		GFF3039	0.11	-0.2
3,114,232	+		GFF3039	0.11	-0.4
3,114,232	+		GFF3039	0.11	-0.7
3,114,232	+		GFF3039	0.11	+0.0
3,114,238	+		GFF3039	0.12	+0.1
3,114,285	+		GFF3039	0.13	-0.6
3,114,285	+		GFF3039	0.13	+0.9
3,114,285	+		GFF3039	0.13	-1.3
3,114,286	+		GFF3039	0.14	+0.7
3,114,287	+		GFF3039	0.14	+0.8
3,114,293	-		GFF3039	0.14	-0.8
3,114,295	-		GFF3039	0.14	-2.8
3,114,301	+		GFF3039	0.14	+0.8
3,114,301	+		GFF3039	0.14	+1.5
3,114,309	-		GFF3039	0.14	-0.4
3,114,318	-		GFF3039	0.15	+0.9
3,114,344	+		GFF3039	0.16	-0.2
3,114,352	-		GFF3039	0.16	-1.1
3,114,363	+		GFF3039	0.17	-0.5
3,114,363	+		GFF3039	0.17	+0.4
3,114,371	-		GFF3039	0.17	+1.5
3,114,371	-		GFF3039	0.17	+0.6
3,114,404	+		GFF3039	0.18	+0.1
3,114,404	+		GFF3039	0.18	-0.2
3,114,404	+		GFF3039	0.18	+0.1
3,114,412	-		GFF3039	0.19	+1.6
3,114,412	-		GFF3039	0.19	-1.2
3,114,412	-		GFF3039	0.19	+0.4
3,114,427	+		GFF3039	0.19	+0.3
3,114,428	-		GFF3039	0.19	+0.1
3,114,439	+		GFF3039	0.20	+0.7
3,114,442	-		GFF3039	0.20	+0.7
3,114,444	+		GFF3039	0.20	-0.3
3,114,448	-		GFF3039	0.20	+0.6
3,114,452	-		GFF3039	0.20	-0.3
3,114,452	-		GFF3039	0.20	-1.7
3,114,452	-		GFF3039	0.20	-0.2
3,114,452	-		GFF3039	0.20	-1.7
3,114,452	-		GFF3039	0.20	-1.6
3,114,452	-		GFF3039	0.20	+1.4
3,114,460	-		GFF3039	0.20	-0.3
3,114,486	+		GFF3039	0.21	+0.6
3,114,488	+		GFF3039	0.22	-0.2
3,114,517	-		GFF3039	0.23	-0.3
3,114,527	+		GFF3039	0.23	-0.5
3,114,532	+		GFF3039	0.23	-0.8
3,114,535	-		GFF3039	0.23	-0.7
3,114,535	-		GFF3039	0.23	+0.6
3,114,595	+		GFF3039	0.26	+0.8
3,114,609	+		GFF3039	0.26	-1.9
3,114,609	+		GFF3039	0.26	-0.6
3,114,609	+		GFF3039	0.26	+0.1
3,114,617	+		GFF3039	0.27	+1.1
3,114,617	+		GFF3039	0.27	-1.7
3,114,617	+		GFF3039	0.27	-0.7
3,114,617	-		GFF3039	0.27	-0.3
3,114,617	-		GFF3039	0.27	-0.3
3,114,617	-		GFF3039	0.27	-0.9
3,114,617	-		GFF3039	0.27	+0.6
3,114,625	-		GFF3039	0.27	+0.2
3,114,646	-		GFF3039	0.28	+1.0
3,114,651	+		GFF3039	0.28	-0.7
3,114,657	+		GFF3039	0.28	-2.2
3,114,657	+		GFF3039	0.28	-1.7
3,114,657	+		GFF3039	0.28	-2.4
3,114,657	+		GFF3039	0.28	+0.7
3,114,657	+		GFF3039	0.28	-1.4
3,114,657	+		GFF3039	0.28	-0.5
3,114,657	+		GFF3039	0.28	-0.7
3,114,657	+		GFF3039	0.28	-0.1
3,114,664	+		GFF3039	0.29	+1.4
3,114,665	-		GFF3039	0.29	-0.5
3,114,665	-		GFF3039	0.29	-2.0
3,114,665	-		GFF3039	0.29	-0.7
3,114,665	-		GFF3039	0.29	-0.9
3,114,665	-		GFF3039	0.29	-0.2
3,114,665	-		GFF3039	0.29	+0.0
3,114,665	-		GFF3039	0.29	+1.5
3,114,665	-		GFF3039	0.29	+0.3
3,114,670	-		GFF3039	0.29	-0.3
3,114,672	+		GFF3039	0.29	-1.7
3,114,673	-		GFF3039	0.29	+1.0
3,114,683	-		GFF3039	0.29	-0.4
3,114,684	+		GFF3039	0.29	-0.7
3,114,689	+		GFF3039	0.30	-0.1
3,114,697	-		GFF3039	0.30	+0.4
3,114,697	-		GFF3039	0.30	+0.8
3,114,699	-		GFF3039	0.30	-0.4
3,114,720	-		GFF3039	0.31	-1.0
3,114,752	+		GFF3039	0.32	+1.2
3,114,766	+		GFF3039	0.33	-1.4
3,114,774	-		GFF3039	0.33	-1.1
3,114,774	-		GFF3039	0.33	-1.3