Strain Fitness in Sphingobium sp. HT1-2 around GFF3033

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,107,706	+		GFF3032	0.44	-0.3
3,107,706	+		GFF3032	0.44	-0.2
3,107,706	+		GFF3032	0.44	-1.0
3,107,708	+		GFF3032	0.44	-0.9
3,107,714	+		GFF3032	0.44	+1.1
3,107,731	-		GFF3032	0.45	+0.5
3,107,731	-		GFF3032	0.45	+0.3
3,107,736	-		GFF3032	0.45	-1.2
3,107,737	-		GFF3032	0.46	-0.2
3,107,742	+		GFF3032	0.46	+0.3
3,107,742	+		GFF3032	0.46	+0.1
3,107,742	+		GFF3032	0.46	-0.4
3,107,742	+		GFF3032	0.46	+0.9
3,107,750	-		GFF3032	0.46	+0.3
3,107,750	-		GFF3032	0.46	-0.2
3,107,750	-		GFF3032	0.46	+0.9
3,107,750	-		GFF3032	0.46	-2.2
3,107,775	+		GFF3032	0.48	-0.2
3,107,792	-		GFF3032	0.49	-3.1
3,107,798	-		GFF3032	0.49	+0.0
3,107,798	-		GFF3032	0.49	+0.6
3,107,814	+		GFF3032	0.50	-0.3
3,107,822	+		GFF3032	0.50	-1.1
3,107,822	-		GFF3032	0.50	-1.1
3,107,822	-		GFF3032	0.50	+0.0
3,107,857	+		GFF3032	0.52	-1.4
3,107,886	+		GFF3032	0.54	-0.6
3,107,894	+		GFF3032	0.55	-0.2
3,107,894	-		GFF3032	0.55	+1.0
3,107,913	+		GFF3032	0.56	+0.0
3,107,921	-		GFF3032	0.56	-0.8
3,107,923	+		GFF3032	0.56	+1.6
3,107,923	+		GFF3032	0.56	-0.0
3,107,931	-		GFF3032	0.57	-1.7
3,107,931	-		GFF3032	0.57	-0.5
3,107,950	-		GFF3032	0.58	+0.0
3,107,956	+		GFF3032	0.58	-0.2
3,107,957	+		GFF3032	0.58	+1.7
3,107,964	-		GFF3032	0.59	+0.4
3,107,964	-		GFF3032	0.59	-0.2
3,107,964	-		GFF3032	0.59	+2.0
3,107,994	+		GFF3032	0.60	-0.2
3,107,994	+		GFF3032	0.60	-1.7
3,108,002	-		GFF3032	0.61	-0.0
3,108,002	-		GFF3032	0.61	-2.8
3,108,002	-		GFF3032	0.61	-1.9
3,108,002	-		GFF3032	0.61	+0.6
3,108,023	-		GFF3032	0.62	+0.6
3,108,025	+		GFF3032	0.62	-0.2
3,108,025	+		GFF3032	0.62	-0.1
3,108,025	+		GFF3032	0.62	-0.7
3,108,033	-		GFF3032	0.63	-1.9
3,108,033	-		GFF3032	0.63	+0.6
3,108,034	+		GFF3032	0.63	+0.1
3,108,034	+		GFF3032	0.63	+0.2
3,108,034	+		GFF3032	0.63	+0.9
3,108,035	+		GFF3032	0.63	+1.0
3,108,042	-		GFF3032	0.63	-2.3
3,108,042	-		GFF3032	0.63	-1.0
3,108,092	+		GFF3032	0.66	-0.4
3,108,102	+		GFF3032	0.66	+0.7
3,108,114	+		GFF3032	0.67	+0.6
3,108,122	-		GFF3032	0.68	-2.4
3,108,127	-		GFF3032	0.68	-0.6
3,108,145	-		GFF3032	0.69	+0.1
3,108,157	+		GFF3032	0.70	-1.4
3,108,164	-		GFF3032	0.70	-0.6
3,108,165	-		GFF3032	0.70	-1.9
3,108,172	+		GFF3032	0.71	-0.8
3,108,172	+		GFF3032	0.71	+1.1
3,108,180	-		GFF3032	0.71	-1.3
3,108,196	+		GFF3032	0.72	+0.9
3,108,201	+		GFF3032	0.72	+1.2
3,108,208	-		GFF3032	0.73	+0.1
3,108,218	+		GFF3032	0.73	-1.7
3,108,260	-		GFF3032	0.76	+0.2
3,108,261	-		GFF3032	0.76	+1.0
3,108,269	+		GFF3032	0.76	-0.6
3,108,298	+		GFF3032	0.78	-0.2
3,108,298	+		GFF3032	0.78	-0.3
3,108,304	+		GFF3032	0.78	+0.2
3,108,304	+		GFF3032	0.78	+1.1
3,108,305	+		GFF3032	0.78	+0.3
3,108,305	-		GFF3032	0.78	-2.4
3,108,306	-		GFF3032	0.78	-1.1
3,108,306	-		GFF3032	0.78	-0.5
3,108,315	+		GFF3032	0.79	-1.3
3,108,323	-		GFF3032	0.79	-0.6
3,108,323	-		GFF3032	0.79	-0.1
3,108,323	-		GFF3032	0.79	-0.4
3,108,323	-		GFF3032	0.79	-0.4
3,108,328	-		GFF3032	0.79	+0.1
3,108,331	+		GFF3032	0.80	-1.4
3,108,347	+		GFF3032	0.81	-0.7
3,108,347	+		GFF3032	0.81	-2.5
3,108,347	+		GFF3032	0.81	-0.6
3,108,357	-		GFF3032	0.81	-2.2
3,108,361	+		GFF3032	0.81	+1.6
3,108,361	+		GFF3032	0.81	+0.7
3,108,362	+		GFF3032	0.81	-1.4
3,108,362	+		GFF3032	0.81	-0.2
3,108,366	+		GFF3032	0.82	-0.6
3,108,366	+		GFF3032	0.82	-0.9
3,108,366	+		GFF3032	0.82	+1.0
3,108,369	-		GFF3032	0.82	-1.4
3,108,370	-		GFF3032	0.82	+0.4
3,108,374	-		GFF3032	0.82	+1.2
3,108,374	-		GFF3032	0.82	-0.2
3,108,380	-		GFF3032	0.82	-0.2
3,108,384	+		GFF3032	0.83	-0.3
3,108,389	+		GFF3032	0.83	+0.5
3,108,392	-		GFF3032	0.83	+2.0
3,108,397	-		GFF3032	0.83	-1.2
3,108,398	+		GFF3032	0.84	-0.4
3,108,399	+		GFF3032	0.84	+0.6
3,108,399	-		GFF3032	0.84	-0.6
3,108,419	+		GFF3032	0.85	-0.3
3,108,421	+		GFF3032	0.85	-0.7
3,108,432	-		GFF3032	0.85	-0.3
3,108,438	-		GFF3032	0.86	-1.3
3,108,457	-		GFF3032	0.87	-2.0
3,108,459	+		GFF3032	0.87	-0.1
3,108,459	+		GFF3032	0.87	-1.4
3,108,459	-		GFF3032	0.87	+0.0
3,108,467	-		GFF3032	0.87	+0.1
3,108,474	+		GFF3032	0.88	+0.3
3,108,482	-		GFF3032	0.88	-0.3
3,108,493	+		GFF3032	0.89	-0.6
3,108,501	-		GFF3032	0.89	+0.9
3,108,540	-				-0.3
3,108,550	+				-0.6
3,108,550	+				+0.1
3,108,556	-				-1.1
3,108,562	+				+1.3
3,108,565	-				-2.9
3,108,567	+				-2.3
3,108,567	+				+0.7
3,108,567	+				+1.4
3,108,567	+				-1.1
3,108,570	-				-1.4
3,108,570	-				-1.7
3,108,575	-				-1.2
3,108,575	-				-0.3
3,108,575	-				+1.0
3,108,575	-				-0.6
3,108,575	-				-0.7
3,108,575	-				+0.5
3,108,575	-				-0.6
3,108,575	-				-0.6
3,108,575	-				-1.3
3,108,654	+				+0.2
3,108,664	+				+1.6
3,108,672	-				-0.1
3,108,692	-				-0.4
3,108,692	-				-1.6
3,108,698	-				+0.4
3,108,698	-				+1.5
3,108,724	-				-1.3
3,108,755	-		GFF3033	0.11	-1.3
3,108,755	-		GFF3033	0.11	-0.8
3,108,783	+		GFF3033	0.16	-0.3
3,108,783	+		GFF3033	0.16	-3.0
3,108,783	+		GFF3033	0.16	-0.2
3,108,783	+		GFF3033	0.16	+0.3
3,108,783	+		GFF3033	0.16	+0.7
3,108,783	+		GFF3033	0.16	-1.5
3,108,791	-		GFF3033	0.17	+0.1
3,108,791	-		GFF3033	0.17	+0.5
3,108,791	-		GFF3033	0.17	-0.1
3,108,806	-		GFF3033	0.20	-0.8
3,108,817	+		GFF3033	0.22	-0.4
3,108,850	+		GFF3033	0.27	-0.1
3,108,858	-		GFF3033	0.29	-0.6
3,108,860	-		GFF3033	0.29	-0.5
3,108,876	+		GFF3033	0.32	-0.1
3,108,876	+		GFF3033	0.32	-0.3
3,108,906	+		GFF3033	0.37	+0.4
3,108,921	+		GFF3033	0.40	+0.9
3,108,954	-		GFF3033	0.45	-0.2
3,108,993	+		GFF3033	0.52	-0.1
3,108,993	+		GFF3033	0.52	+0.3
3,108,993	+		GFF3033	0.52	-0.4
3,109,018	-		GFF3033	0.57	+0.4
3,109,044	-		GFF3033	0.61	+0.0
3,109,047	+		GFF3033	0.62	-0.2
3,109,061	+		GFF3033	0.64	+0.8
3,109,069	-		GFF3033	0.65	+0.1
3,109,071	-		GFF3033	0.66	-0.1
3,109,084	+		GFF3033	0.68	-0.1
3,109,084	+		GFF3033	0.68	-0.9
3,109,084	+		GFF3033	0.68	-2.0
3,109,092	-		GFF3033	0.69	-0.9
3,109,092	-		GFF3033	0.69	-0.0
3,109,092	-		GFF3033	0.69	-0.1
3,109,093	-		GFF3033	0.70	+0.5
3,109,118	+		GFF3033	0.74	-0.3
3,109,118	+		GFF3033	0.74	+1.2
3,109,118	+		GFF3033	0.74	+0.2
3,109,126	-		GFF3033	0.75	-0.1
3,109,178	-		GFF3033	0.84	+0.9
3,109,218	+				+0.3
3,109,254	-				+0.4
3,109,274	+				-0.8
3,109,282	-				+0.9
3,109,282	-				-1.6
3,109,287	-				+1.6
3,109,299	-				-1.7
3,109,309	-		GFF3034	0.10	-1.9
3,109,311	-		GFF3034	0.11	+0.3
3,109,320	+		GFF3034	0.13	-2.3
3,109,320	+		GFF3034	0.13	+0.3
3,109,328	-		GFF3034	0.15	-0.4
3,109,328	-		GFF3034	0.15	-0.3
3,109,333	-		GFF3034	0.16	+1.4
3,109,337	-		GFF3034	0.17	-0.3
3,109,351	+		GFF3034	0.20	-0.3
3,109,354	-		GFF3034	0.21	-0.1
3,109,357	-		GFF3034	0.21	-0.3
3,109,362	-		GFF3034	0.23	+1.1
3,109,364	-		GFF3034	0.23	+0.7
3,109,410	+		GFF3034	0.34	-0.9
3,109,432	+		GFF3034	0.39	+0.4
3,109,433	-		GFF3034	0.39	-0.4
3,109,433	-		GFF3034	0.39	-0.7
3,109,433	-		GFF3034	0.39	+0.1
3,109,433	-		GFF3034	0.39	+0.3
3,109,437	+		GFF3034	0.40	-2.3
3,109,499	+		GFF3034	0.54	-1.7
3,109,499	+		GFF3034	0.54	-0.9
3,109,499	+		GFF3034	0.54	-0.2
3,109,499	+		GFF3034	0.54	+0.3
3,109,499	+		GFF3034	0.54	+0.5
3,109,499	+		GFF3034	0.54	-1.3
3,109,499	+		GFF3034	0.54	-0.3
3,109,507	-		GFF3034	0.56	+0.8
3,109,507	-		GFF3034	0.56	+0.3
3,109,507	-		GFF3034	0.56	-0.3
3,109,507	-		GFF3034	0.56	-0.2
3,109,507	-		GFF3034	0.56	-0.2
3,109,507	-		GFF3034	0.56	-1.3
3,109,507	-		GFF3034	0.56	-0.0
3,109,507	-		GFF3034	0.56	-0.2
3,109,507	-		GFF3034	0.56	+0.2
3,109,507	-		GFF3034	0.56	+1.1
3,109,507	-		GFF3034	0.56	+0.3
3,109,532	+		GFF3034	0.62	-0.1
3,109,542	+		GFF3034	0.64	-1.0
3,109,550	-		GFF3034	0.66	-2.9
3,109,562	-		GFF3034	0.69	-1.2
3,109,571	+		GFF3034	0.71	-1.4
3,109,583	+		GFF3034	0.73	+0.4
3,109,583	+		GFF3034	0.73	+0.6
3,109,584	-		GFF3034	0.74	-1.0
3,109,590	-		GFF3034	0.75	-0.7
3,109,619	+		GFF3034	0.82	+0.7
3,109,706	-				-0.1
3,109,746	-		GFF3035	0.11	-1.2
3,109,759	+		GFF3035	0.14	-0.4
3,109,797	-		GFF3035	0.24	-0.4
3,109,802	+		GFF3035	0.25	+1.1
3,109,817	+		GFF3035	0.29	-2.1
3,109,832	+		GFF3035	0.33	-1.2
3,109,832	+		GFF3035	0.33	+0.1
3,109,832	+		GFF3035	0.33	-0.2
3,109,832	+		GFF3035	0.33	-1.4
3,109,840	-		GFF3035	0.35	-1.2
3,109,840	-		GFF3035	0.35	-0.5
3,109,840	-		GFF3035	0.35	+1.6
3,109,840	-		GFF3035	0.35	-1.9
3,109,840	-		GFF3035	0.35	-0.6
3,109,840	-		GFF3035	0.35	-0.8
3,109,840	-		GFF3035	0.35	-0.6
3,109,840	-		GFF3035	0.35	+0.3
3,109,845	-		GFF3035	0.36	-0.4
3,109,845	-		GFF3035	0.36	-0.7
3,109,871	+		GFF3035	0.42	-0.2
3,109,872	+		GFF3035	0.43	-1.6
3,109,879	+		GFF3035	0.44	+0.3
3,109,880	-		GFF3035	0.45	+0.8
3,109,881	+		GFF3035	0.45	-0.3
3,109,889	-		GFF3035	0.47	-2.1
3,109,903	-		GFF3035	0.50	-0.3
3,109,903	-		GFF3035	0.50	-1.6
3,109,927	+		GFF3035	0.56	-0.9
3,109,950	+		GFF3035	0.62	+1.7
3,109,950	+		GFF3035	0.62	-1.1
3,109,961	+		GFF3035	0.65	-1.3
3,109,977	-		GFF3035	0.69	-0.7
3,109,977	-		GFF3035	0.69	-1.9
3,109,986	-		GFF3035	0.71	-0.3
3,110,011	+		GFF3035	0.77	+0.8
3,110,019	-		GFF3035	0.79	-0.4
3,110,040	+		GFF3035	0.84	+0.7
3,110,047	-		GFF3035	0.86	+0.0
3,110,051	+		GFF3035	0.87	+0.3
3,110,051	+		GFF3035	0.87	+1.0
3,110,059	-		GFF3035	0.89	-0.9
3,110,100	+				-1.4
3,110,100	+				-1.3
3,110,102	+				-1.3
3,110,102	+				-0.3
3,110,105	+				-1.8
3,110,108	-				-0.6
3,110,108	-				-1.8
3,110,110	-				-0.6
3,110,116	+				-0.6
3,110,117	+				+0.4
3,110,125	-				-0.7
3,110,127	+				-0.3
3,110,127	+				+0.5
3,110,133	+				-0.8
3,110,135	+				-2.7
3,110,141	-				+0.1
3,110,141	-				+0.1
3,110,141	-				-0.4
3,110,141	-				+0.0
3,110,143	-		GFF3036	0.10	-0.2
3,110,152	+		GFF3036	0.12	-1.2
3,110,155	-		GFF3036	0.13	-1.8
3,110,155	-		GFF3036	0.13	+0.4
3,110,174	-		GFF3036	0.18	+0.6
3,110,187	-		GFF3036	0.22	-0.4
3,110,188	+		GFF3036	0.22	-0.7
3,110,229	+		GFF3036	0.33	+0.6
3,110,229	+		GFF3036	0.33	+0.6
3,110,229	+		GFF3036	0.33	-0.3
3,110,234	+		GFF3036	0.34	-0.7
3,110,234	+		GFF3036	0.34	-2.7
3,110,237	-		GFF3036	0.35	-1.4
3,110,242	-		GFF3036	0.36	-0.4
3,110,242	-		GFF3036	0.36	-0.5
3,110,252	-		GFF3036	0.39	-0.3
3,110,254	+		GFF3036	0.39	+1.7
3,110,255	+		GFF3036	0.39	-0.4
3,110,264	+		GFF3036	0.42	-0.7
3,110,264	+		GFF3036	0.42	+1.4
3,110,266	+		GFF3036	0.42	+0.8