Strain Fitness in Sphingobium sp. HT1-2 around GFF2999

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,057,160	+				-3.5
3,057,168	-				-1.6
3,057,168	-				-1.8
3,057,168	-				+0.8
3,057,168	-				-0.1
3,057,168	-				-0.6
3,057,215	-				-2.0
3,057,232	+				+0.3
3,057,278	+		GFF2998	0.13	+0.3
3,057,309	+		GFF2998	0.17	-1.6
3,057,309	+		GFF2998	0.17	+0.2
3,057,317	-		GFF2998	0.17	-0.6
3,057,318	-		GFF2998	0.17	+0.4
3,057,318	-		GFF2998	0.17	-0.8
3,057,318	-		GFF2998	0.17	-0.7
3,057,322	+		GFF2998	0.18	+0.8
3,057,323	-		GFF2998	0.18	+0.7
3,057,323	-		GFF2998	0.18	-2.1
3,057,325	+		GFF2998	0.18	-0.3
3,057,358	-		GFF2998	0.21	+1.1
3,057,374	+		GFF2998	0.23	-0.4
3,057,382	-		GFF2998	0.24	-2.7
3,057,382	-		GFF2998	0.24	-0.6
3,057,382	-		GFF2998	0.24	-0.1
3,057,382	-		GFF2998	0.24	-2.0
3,057,397	-		GFF2998	0.25	+0.6
3,057,407	+		GFF2998	0.26	+1.2
3,057,407	+		GFF2998	0.26	-0.4
3,057,410	-		GFF2998	0.27	+1.2
3,057,417	+		GFF2998	0.27	+0.2
3,057,420	-		GFF2998	0.28	-0.2
3,057,421	-		GFF2998	0.28	-0.3
3,057,421	-		GFF2998	0.28	-0.2
3,057,421	-		GFF2998	0.28	+0.1
3,057,429	-		GFF2998	0.29	-0.5
3,057,441	-		GFF2998	0.30	+0.5
3,057,441	-		GFF2998	0.30	-1.5
3,057,441	-		GFF2998	0.30	-0.2
3,057,441	-		GFF2998	0.30	-0.9
3,057,441	-		GFF2998	0.30	-2.5
3,057,511	+		GFF2998	0.37	-2.8
3,057,511	+		GFF2998	0.37	-0.8
3,057,512	+		GFF2998	0.37	+0.2
3,057,519	-		GFF2998	0.38	+0.3
3,057,520	-		GFF2998	0.38	-0.6
3,057,520	-		GFF2998	0.38	+0.7
3,057,520	-		GFF2998	0.38	+1.2
3,057,528	+		GFF2998	0.39	+0.4
3,057,542	+		GFF2998	0.40	-0.8
3,057,567	+		GFF2998	0.42	-0.2
3,057,567	+		GFF2998	0.42	+1.0
3,057,571	-		GFF2998	0.43	-1.2
3,057,572	-		GFF2998	0.43	-1.7
3,057,573	+		GFF2998	0.43	-1.3
3,057,581	-		GFF2998	0.44	+1.1
3,057,582	-		GFF2998	0.44	-0.4
3,057,590	+		GFF2998	0.45	-1.0
3,057,612	+		GFF2998	0.47	-1.1
3,057,620	-		GFF2998	0.48	+0.5
3,057,646	-		GFF2998	0.50	+0.7
3,057,672	+		GFF2998	0.53	-0.7
3,057,685	-		GFF2998	0.54	-1.4
3,057,707	-		GFF2998	0.57	+0.8
3,057,732	+		GFF2998	0.59	+0.8
3,057,778	-		GFF2998	0.64	+0.1
3,057,778	-		GFF2998	0.64	-0.5
3,057,780	+		GFF2998	0.64	+1.4
3,057,786	+		GFF2998	0.65	+0.6
3,057,786	+		GFF2998	0.65	+0.4
3,057,797	+		GFF2998	0.66	+1.0
3,057,797	+		GFF2998	0.66	-0.6
3,057,797	+		GFF2998	0.66	+0.4
3,057,797	+		GFF2998	0.66	+0.1
3,057,805	-		GFF2998	0.66	+0.3
3,057,805	-		GFF2998	0.66	-1.0
3,057,805	-		GFF2998	0.66	+0.1
3,057,810	+		GFF2998	0.67	+1.6
3,057,810	+		GFF2998	0.67	-0.3
3,057,818	-		GFF2998	0.68	-1.3
3,057,823	-		GFF2998	0.68	+1.2
3,057,827	+		GFF2998	0.69	-0.1
3,057,845	+		GFF2998	0.70	-1.0
3,057,845	+		GFF2998	0.70	-0.8
3,057,853	-		GFF2998	0.71	-0.5
3,057,853	-		GFF2998	0.71	+0.0
3,057,853	-		GFF2998	0.71	-0.2
3,057,869	-		GFF2998	0.73	-0.2
3,057,870	-		GFF2998	0.73	+0.4
3,057,870	-		GFF2998	0.73	+0.8
3,057,875	+		GFF2998	0.74	-1.4
3,057,881	+		GFF2998	0.74	-0.4
3,057,889	+		GFF2998	0.75	-0.3
3,057,907	+		GFF2998	0.77	-0.2
3,057,909	-		GFF2998	0.77	+0.3
3,057,915	-		GFF2998	0.78	+0.1
3,057,934	-		GFF2998	0.79	-0.5
3,057,947	+		GFF2998	0.81	+0.8
3,057,955	-		GFF2998	0.82	+0.3
3,057,960	-		GFF2998	0.82	-0.8
3,057,965	-		GFF2998	0.83	+1.1
3,057,998	+		GFF2998	0.86	-0.2
3,057,998	+		GFF2998	0.86	-0.7
3,058,003	+		GFF2998	0.86	-1.8
3,058,006	-		GFF2998	0.87	+0.1
3,058,006	-		GFF2998	0.87	+0.1
3,058,011	-		GFF2998	0.87	+1.3
3,058,011	-		GFF2998	0.87	-0.3
3,058,016	-		GFF2998	0.88	+1.1
3,058,035	+		GFF2998	0.90	+0.5
3,058,066	+				+1.3
3,058,070	+				+0.1
3,058,073	-				-0.4
3,058,074	-				-0.4
3,058,074	-				+1.8
3,058,075	+				+0.7
3,058,075	-				-1.5
3,058,086	+				+0.5
3,058,100	-				+0.5
3,058,119	-				-1.3
3,058,119	-				-2.2
3,058,121	+				+1.2
3,058,132	+				-1.4
3,058,178	-				+0.2
3,058,191	+				+0.7
3,058,191	+				-0.4
3,058,199	+				-1.8
3,058,199	+				-0.8
3,058,211	+				-0.8
3,058,219	-				+0.4
3,058,219	-				+1.2
3,058,219	-				+0.0
3,058,219	-				+0.5
3,058,219	-				+0.2
3,058,219	-				-1.2
3,058,238	-		GFF2999	0.10	-0.6
3,058,251	-		GFF2999	0.12	+0.8
3,058,252	+		GFF2999	0.12	+0.9
3,058,257	+		GFF2999	0.12	-0.7
3,058,257	+		GFF2999	0.12	+1.3
3,058,260	-		GFF2999	0.13	+0.3
3,058,262	+		GFF2999	0.13	+0.3
3,058,262	+		GFF2999	0.13	-1.3
3,058,265	-		GFF2999	0.13	-1.7
3,058,265	-		GFF2999	0.13	+0.3
3,058,270	-		GFF2999	0.14	+0.7
3,058,270	-		GFF2999	0.14	-1.4
3,058,274	+		GFF2999	0.14	-1.0
3,058,274	+		GFF2999	0.14	-2.0
3,058,274	+		GFF2999	0.14	-1.5
3,058,282	-		GFF2999	0.15	+0.6
3,058,282	-		GFF2999	0.15	-0.4
3,058,284	+		GFF2999	0.15	-1.9
3,058,284	+		GFF2999	0.15	-2.1
3,058,284	+		GFF2999	0.15	-1.7
3,058,284	+		GFF2999	0.15	-1.6
3,058,284	+		GFF2999	0.15	+0.3
3,058,288	-		GFF2999	0.16	-0.6
3,058,312	+		GFF2999	0.18	-0.4
3,058,320	-		GFF2999	0.19	-0.6
3,058,321	+		GFF2999	0.19	-0.7
3,058,336	+		GFF2999	0.21	+0.6
3,058,347	+		GFF2999	0.22	-2.0
3,058,362	-		GFF2999	0.24	+0.3
3,058,362	-		GFF2999	0.24	+1.3
3,058,367	-		GFF2999	0.24	-0.3
3,058,367	-		GFF2999	0.24	+0.1
3,058,373	+		GFF2999	0.25	+0.6
3,058,379	+		GFF2999	0.26	+0.1
3,058,379	+		GFF2999	0.26	-0.5
3,058,384	+		GFF2999	0.26	+0.1
3,058,384	+		GFF2999	0.26	-1.2
3,058,384	+		GFF2999	0.26	-0.9
3,058,384	+		GFF2999	0.26	-1.4
3,058,384	+		GFF2999	0.26	+1.0
3,058,384	+		GFF2999	0.26	-0.2
3,058,392	-		GFF2999	0.27	+0.6
3,058,392	-		GFF2999	0.27	+0.7
3,058,392	-		GFF2999	0.27	+0.4
3,058,392	-		GFF2999	0.27	+0.5
3,058,392	-		GFF2999	0.27	+0.5
3,058,392	-		GFF2999	0.27	+0.7
3,058,392	-		GFF2999	0.27	-2.0
3,058,392	-		GFF2999	0.27	+0.3
3,058,392	-		GFF2999	0.27	-0.7
3,058,392	-		GFF2999	0.27	+0.5
3,058,392	-		GFF2999	0.27	-0.4
3,058,392	-		GFF2999	0.27	+1.1
3,058,392	-		GFF2999	0.27	+1.0
3,058,392	-		GFF2999	0.27	-0.2
3,058,392	-		GFF2999	0.27	-0.4
3,058,392	-		GFF2999	0.27	+0.1
3,058,392	-		GFF2999	0.27	-0.7
3,058,402	-		GFF2999	0.28	+0.4
3,058,422	+		GFF2999	0.30	+0.0
3,058,422	+		GFF2999	0.30	-0.1
3,058,430	-		GFF2999	0.31	+0.3
3,058,430	-		GFF2999	0.31	-1.2
3,058,430	-		GFF2999	0.31	-1.1
3,058,430	-		GFF2999	0.31	-1.6
3,058,431	+		GFF2999	0.31	+0.3
3,058,433	+		GFF2999	0.31	-1.0
3,058,433	+		GFF2999	0.31	+0.3
3,058,439	-		GFF2999	0.32	+1.3
3,058,450	-		GFF2999	0.33	+0.3
3,058,458	+		GFF2999	0.34	-1.4
3,058,468	+		GFF2999	0.35	-0.7
3,058,468	+		GFF2999	0.35	+0.0
3,058,469	+		GFF2999	0.35	-0.1
3,058,469	+		GFF2999	0.35	+0.6
3,058,476	-		GFF2999	0.36	+0.2
3,058,476	-		GFF2999	0.36	-1.2
3,058,476	-		GFF2999	0.36	-0.9
3,058,476	-		GFF2999	0.36	-1.2
3,058,476	-		GFF2999	0.36	+0.0
3,058,476	-		GFF2999	0.36	-0.4
3,058,476	-		GFF2999	0.36	+0.1
3,058,477	-		GFF2999	0.36	+1.8
3,058,477	-		GFF2999	0.36	-0.4
3,058,477	-		GFF2999	0.36	-1.3
3,058,481	-		GFF2999	0.37	-0.3
3,058,481	-		GFF2999	0.37	-1.6
3,058,481	-		GFF2999	0.37	+0.6
3,058,483	+		GFF2999	0.37	-1.4
3,058,520	+		GFF2999	0.41	-1.3
3,058,520	+		GFF2999	0.41	+0.4
3,058,520	+		GFF2999	0.41	-0.3
3,058,528	-		GFF2999	0.42	-0.4
3,058,528	-		GFF2999	0.42	+1.1
3,058,528	-		GFF2999	0.42	+0.5
3,058,575	+		GFF2999	0.47	+0.0
3,058,576	+		GFF2999	0.47	-0.4
3,058,576	+		GFF2999	0.47	+1.1
3,058,607	-		GFF2999	0.50	+0.8
3,058,607	-		GFF2999	0.50	-0.1
3,058,609	+		GFF2999	0.50	+1.3
3,058,609	+		GFF2999	0.50	-2.1
3,058,609	+		GFF2999	0.50	+1.9
3,058,609	+		GFF2999	0.50	-1.1
3,058,609	+		GFF2999	0.50	+0.5
3,058,609	+		GFF2999	0.50	-0.3
3,058,614	+		GFF2999	0.51	-0.6
3,058,617	-		GFF2999	0.51	+0.2
3,058,617	-		GFF2999	0.51	-0.7
3,058,617	-		GFF2999	0.51	-2.1
3,058,617	-		GFF2999	0.51	+0.6
3,058,617	-		GFF2999	0.51	-0.2
3,058,617	-		GFF2999	0.51	-1.4
3,058,648	-		GFF2999	0.55	+0.8
3,058,676	+		GFF2999	0.58	-0.4
3,058,677	+		GFF2999	0.58	-0.7
3,058,677	+		GFF2999	0.58	-1.2
3,058,723	-		GFF2999	0.63	-0.7
3,058,742	+		GFF2999	0.65	-0.7
3,058,742	+		GFF2999	0.65	+0.3
3,058,760	+		GFF2999	0.67	-0.5
3,058,799	+		GFF2999	0.71	-0.9
3,058,799	+		GFF2999	0.71	-0.3
3,058,799	+		GFF2999	0.71	-0.2
3,058,799	+		GFF2999	0.71	-1.6
3,058,800	+		GFF2999	0.71	-1.5
3,058,807	-		GFF2999	0.72	-0.0
3,058,807	-		GFF2999	0.72	-0.4
3,058,807	-		GFF2999	0.72	-1.5
3,058,810	+		GFF2999	0.72	-0.2
3,058,818	-		GFF2999	0.73	+0.4
3,058,830	+		GFF2999	0.74	+0.7
3,058,830	+		GFF2999	0.74	+0.0
3,058,838	-		GFF2999	0.75	-0.9
3,058,849	+		GFF2999	0.76	+0.5
3,058,869	+		GFF2999	0.78	+0.1
3,058,871	-		GFF2999	0.79	+0.0
3,058,883	+		GFF2999	0.80	-1.3
3,058,903	-		GFF2999	0.82	+0.8
3,058,908	+		GFF2999	0.83	+0.3
3,058,911	-		GFF2999	0.83	+0.3
3,058,916	-		GFF2999	0.83	-0.4
3,058,916	-		GFF2999	0.83	+0.7
3,058,943	+		GFF2999	0.86	-1.4
3,058,948	-		GFF2999	0.87	+0.4
3,058,948	-		GFF2999	0.87	-0.3
3,058,948	-		GFF2999	0.87	+0.3
3,058,953	-		GFF2999	0.87	-0.4
3,058,974	-		GFF2999	0.90	-0.7
3,058,995	-				-0.3
3,059,014	-				-1.5
3,059,023	-				-0.3
3,059,030	-				+0.4
3,059,032	-				-0.2
3,059,054	-				-0.9
3,059,086	-				-1.8
3,059,090	+				-1.3
3,059,097	+				-1.4
3,059,097	+				-0.5
3,059,098	-				-1.1
3,059,102	+				+0.4
3,059,102	+				-1.3
3,059,102	+				+1.6
3,059,105	-				-1.0
3,059,105	-				+0.7
3,059,105	-				-0.6
3,059,105	-				+0.2
3,059,105	-				+1.2
3,059,105	-				-1.2
3,059,105	-				-0.3
3,059,105	-				-2.0
3,059,105	-				-2.5
3,059,105	-				-0.2
3,059,110	-				-0.8
3,059,110	-				+0.5
3,059,113	+				+1.5
3,059,121	-				-0.0
3,059,129	-				+0.5
3,059,134	-				+0.2
3,059,134	-				+1.0
3,059,134	-				+0.4
3,059,152	-				+0.5
3,059,160	+				-0.4
3,059,167	-				-0.6
3,059,167	-				+0.6
3,059,168	-				+0.2
3,059,195	-				-0.0
3,059,197	+				-0.0
3,059,197	+				-0.3
3,059,197	+				+0.3
3,059,202	+				+0.1
3,059,205	-				-1.8
3,059,207	+				-0.4
3,059,207	+				-1.3
3,059,207	+				+0.7
3,059,207	+				-1.2
3,059,207	+				+0.3
3,059,207	+				+0.0
3,059,215	-				+0.1
3,059,215	-				-0.0
3,059,215	-				-1.1
3,059,215	-				-0.2
3,059,217	+				-1.3
3,059,225	-				-2.0
3,059,225	-				+0.4
3,059,236	-				+1.4
3,059,241	-				-0.3
3,059,253	+		GFF3000	0.11	-1.7
3,059,261	-		GFF3000	0.11	-0.6
3,059,261	-		GFF3000	0.11	+0.6
3,059,280	-		GFF3000	0.12	-1.2
3,059,286	-		GFF3000	0.13	-0.3
3,059,286	-		GFF3000	0.13	+0.4
3,059,294	+		GFF3000	0.13	-2.4
3,059,299	+		GFF3000	0.13	+0.0
3,059,302	-		GFF3000	0.14	+0.3
3,059,302	-		GFF3000	0.14	-0.9
3,059,308	-		GFF3000	0.14	+0.0
3,059,312	-		GFF3000	0.14	-0.9
3,059,346	+		GFF3000	0.16	-1.0
3,059,354	-		GFF3000	0.17	+0.3
3,059,356	-		GFF3000	0.17	-0.3
3,059,361	-		GFF3000	0.17	+0.3
3,059,361	-		GFF3000	0.17	-1.2
3,059,361	-		GFF3000	0.17	-0.5
3,059,380	-		GFF3000	0.19	+0.3
3,059,408	-		GFF3000	0.20	+0.7
3,059,410	+		GFF3000	0.21	-1.2
3,059,410	+		GFF3000	0.21	-2.1
3,059,443	-		GFF3000	0.23	-0.3
3,059,450	+		GFF3000	0.23	-0.9
3,059,450	+		GFF3000	0.23	-1.0
3,059,450	+		GFF3000	0.23	-0.2
3,059,450	+		GFF3000	0.23	+1.3
3,059,450	+		GFF3000	0.23	-0.5
3,059,452	-		GFF3000	0.23	+1.4
3,059,453	-		GFF3000	0.23	-0.7
3,059,458	-		GFF3000	0.24	+0.6
3,059,458	-		GFF3000	0.24	-1.8
3,059,458	-		GFF3000	0.24	-1.0
3,059,458	-		GFF3000	0.24	-0.9
3,059,470	+		GFF3000	0.24	+0.5
3,059,475	+		GFF3000	0.25	-1.3
3,059,480	+		GFF3000	0.25	+0.8
3,059,480	+		GFF3000	0.25	-0.2
3,059,480	+		GFF3000	0.25	-0.2
3,059,483	-		GFF3000	0.25	-1.2
3,059,488	-		GFF3000	0.26	-2.3
3,059,488	-		GFF3000	0.26	-0.3
3,059,488	-		GFF3000	0.26	+0.1
3,059,488	-		GFF3000	0.26	+0.7
3,059,488	-		GFF3000	0.26	-0.9
3,059,525	+		GFF3000	0.28	-0.7
3,059,533	-		GFF3000	0.28	-1.6
3,059,537	+		GFF3000	0.29	+0.9
3,059,538	+		GFF3000	0.29	-1.1
3,059,546	-		GFF3000	0.29	-0.3
3,059,546	-		GFF3000	0.29	-1.3
3,059,597	+		GFF3000	0.33	-1.0
3,059,597	+		GFF3000	0.33	-0.0
3,059,603	-		GFF3000	0.33	-0.2
3,059,605	-		GFF3000	0.33	-0.8
3,059,631	-		GFF3000	0.35	-0.3
3,059,652	+		GFF3000	0.36	+0.3
3,059,652	+		GFF3000	0.36	+0.7
3,059,652	+		GFF3000	0.36	-0.7
3,059,665	-		GFF3000	0.37	-0.0
3,059,665	-		GFF3000	0.37	-0.0
3,059,693	+		GFF3000	0.39	-0.7
3,059,693	+		GFF3000	0.39	-0.3
3,059,717	-		GFF3000	0.40	-0.1
3,059,745	-		GFF3000	0.42	-0.2
3,059,750	-		GFF3000	0.42	+0.3
3,059,789	+		GFF3000	0.45	-0.7
3,059,821	+		GFF3000	0.47	-0.5
3,059,829	-		GFF3000	0.47	-0.9
3,059,882	+		GFF3000	0.51	-0.3
3,059,890	-		GFF3000	0.51	-0.5
3,059,892	+		GFF3000	0.51	+1.1
3,059,928	+		GFF3000	0.54	+0.6
3,059,957	-		GFF3000	0.55	-1.8
3,059,961	+		GFF3000	0.56	+1.4
3,059,961	-		GFF3000	0.56	-0.1
3,059,961	-		GFF3000	0.56	+0.5
3,059,962	+		GFF3000	0.56	-0.0
3,059,974	-		GFF3000	0.57	-0.0
3,059,976	+		GFF3000	0.57	-0.4
3,059,978	+		GFF3000	0.57	+0.3
3,059,981	-		GFF3000	0.57	-1.2
3,059,997	+		GFF3000	0.58	-0.8
3,059,997	+		GFF3000	0.58	-0.7
3,059,997	+		GFF3000	0.58	-1.6
3,059,997	+		GFF3000	0.58	-1.7
3,059,997	+		GFF3000	0.58	-1.6
3,060,003	-		GFF3000	0.58	+0.1
3,060,005	-		GFF3000	0.59	-2.3
3,060,005	-		GFF3000	0.59	-1.6
3,060,005	-		GFF3000	0.59	-0.3
3,060,005	-		GFF3000	0.59	-1.2
3,060,010	-		GFF3000	0.59	-1.1
3,060,010	-		GFF3000	0.59	+1.0
3,060,030	+		GFF3000	0.60	+1.3