Strain Fitness in Sphingobium sp. HT1-2 around GFF2975

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,027,251	+				-1.7
3,027,253	+				-0.3
3,027,253	+				+0.6
3,027,257	+				-0.6
3,027,446	-		GFF2974	0.39	-1.3
3,027,450	-		GFF2974	0.39	-1.9
3,027,808	+				+0.4
3,027,826	-				-0.3
3,027,833	-				-2.5
3,027,929	+				-0.2
3,027,961	-				+1.1
3,027,982	+				-0.5
3,027,982	+				-0.6
3,027,986	+				-0.2
3,027,987	+				-1.2
3,027,994	-				-1.0
3,027,995	-				+0.2
3,028,028	+				-1.4
3,028,028	+				+0.8
3,028,028	+				+1.8
3,028,028	+				-0.2
3,028,036	-				-0.2
3,028,036	-				+0.5
3,028,036	-				-0.3
3,028,036	-				-0.7
3,028,036	-				-0.8
3,028,082	-				+0.9
3,028,090	+				+1.0
3,028,101	+				+0.2
3,028,110	+				+0.0
3,028,110	+				-0.1
3,028,118	-				-0.3
3,028,118	-				-2.1
3,028,118	-				-0.4
3,028,118	-				+0.0
3,028,118	-				+1.5
3,028,118	-				-0.0
3,028,135	+				-1.6
3,028,143	-				-0.2
3,028,207	+				+0.8
3,028,214	-				+0.2
3,028,214	-				-1.9
3,028,214	-				+0.5
3,028,224	+				-0.6
3,028,227	-				-0.8
3,028,229	+				-0.8
3,028,229	+				+0.3
3,028,229	+				-1.5
3,028,229	+				-2.1
3,028,232	-				-0.4
3,028,232	-				+0.8
3,028,237	-				+0.5
3,028,237	-				-0.8
3,028,248	-				+0.8
3,028,260	-				+0.8
3,028,264	-				-0.6
3,028,266	+				-0.4
3,028,294	+		GFF2975	0.15	-1.2
3,028,300	+		GFF2975	0.16	-1.6
3,028,321	-		GFF2975	0.21	+0.6
3,028,331	-		GFF2975	0.24	-0.6
3,028,331	-		GFF2975	0.24	-2.1
3,028,371	+		GFF2975	0.33	-0.6
3,028,373	-		GFF2975	0.34	-2.0
3,028,376	+		GFF2975	0.35	+2.5
3,028,384	+		GFF2975	0.36	-0.9
3,028,384	+		GFF2975	0.36	+0.7
3,028,384	-		GFF2975	0.36	-0.1
3,028,384	-		GFF2975	0.36	+0.1
3,028,392	-		GFF2975	0.38	-0.4
3,028,408	+		GFF2975	0.42	-0.3
3,028,416	+		GFF2975	0.44	-1.5
3,028,416	+		GFF2975	0.44	-0.4
3,028,416	-		GFF2975	0.44	-0.2
3,028,416	-		GFF2975	0.44	-0.6
3,028,424	-		GFF2975	0.46	+1.1
3,028,425	+		GFF2975	0.46	-1.1
3,028,439	+		GFF2975	0.50	+0.4
3,028,452	+		GFF2975	0.53	+0.1
3,028,452	-		GFF2975	0.53	-0.0
3,028,458	+		GFF2975	0.54	-1.4
3,028,459	+		GFF2975	0.55	-2.2
3,028,462	-		GFF2975	0.55	+1.5
3,028,462	-		GFF2975	0.55	+1.7
3,028,464	+		GFF2975	0.56	-0.2
3,028,466	-		GFF2975	0.56	+0.2
3,028,466	-		GFF2975	0.56	-0.0
3,028,466	-		GFF2975	0.56	+0.7
3,028,467	-		GFF2975	0.57	-1.3
3,028,481	+		GFF2975	0.60	+0.1
3,028,488	+		GFF2975	0.62	+0.4
3,028,488	-		GFF2975	0.62	+1.1
3,028,516	+		GFF2975	0.68	-1.9
3,028,523	+		GFF2975	0.70	-2.2
3,028,523	+		GFF2975	0.70	-0.3
3,028,523	+		GFF2975	0.70	-0.7
3,028,523	+		GFF2975	0.70	+0.1
3,028,523	+		GFF2975	0.70	+0.3
3,028,523	+		GFF2975	0.70	+0.4
3,028,523	+		GFF2975	0.70	+1.3
3,028,523	+		GFF2975	0.70	+0.5
3,028,524	+		GFF2975	0.70	-1.9
3,028,531	-		GFF2975	0.72	-0.0
3,028,531	-		GFF2975	0.72	-2.8
3,028,531	-		GFF2975	0.72	+0.4
3,028,563	-		GFF2975	0.80	-0.4
3,028,579	-		GFF2975	0.84	+0.2
3,028,579	-		GFF2975	0.84	-1.3
3,028,594	-		GFF2975	0.87	-0.7
3,028,601	-		GFF2975	0.89	-0.7
3,028,607	+				+0.4
3,028,615	-				+0.1
3,028,626	+				+0.2
3,028,635	+				-0.2
3,028,635	+				-1.7
3,028,643	-				-0.5
3,028,675	-				-1.0
3,028,675	-				+0.2
3,028,675	-				-0.7
3,028,695	-				-0.7
3,028,704	+				+0.3
3,028,728	-				-1.4
3,028,737	-				-0.8
3,028,766	+				-0.2
3,028,766	+				-1.8
3,028,766	+				-0.7
3,028,774	-				+1.2
3,028,774	-				-1.0
3,028,774	-				+1.2
3,028,774	-				-1.6
3,028,777	+		GFF2976	0.10	+2.3
3,028,784	-		GFF2976	0.11	-1.4
3,028,785	-		GFF2976	0.11	-1.4
3,028,785	-		GFF2976	0.11	-0.8
3,028,803	+		GFF2976	0.12	-0.5
3,028,803	+		GFF2976	0.12	-0.5
3,028,808	+		GFF2976	0.13	-1.0
3,028,811	-		GFF2976	0.13	+0.2
3,028,816	-		GFF2976	0.13	+0.8
3,028,816	-		GFF2976	0.13	+0.1
3,028,863	+		GFF2976	0.17	-1.4
3,028,869	-		GFF2976	0.17	-2.1
3,028,873	+		GFF2976	0.18	-0.9
3,028,873	+		GFF2976	0.18	+0.3
3,028,911	+		GFF2976	0.21	-1.0
3,028,911	+		GFF2976	0.21	+0.7
3,028,919	-		GFF2976	0.21	+0.7
3,028,919	-		GFF2976	0.21	-0.4
3,028,919	-		GFF2976	0.21	-0.0
3,028,945	+		GFF2976	0.23	-0.2
3,028,948	+		GFF2976	0.24	-0.8
3,028,949	-		GFF2976	0.24	-0.7
3,028,978	+		GFF2976	0.26	-0.6
3,028,992	+		GFF2976	0.27	+0.9
3,028,999	+		GFF2976	0.28	-0.2
3,029,004	+		GFF2976	0.28	-0.3
3,029,007	-		GFF2976	0.28	+0.4
3,029,007	-		GFF2976	0.28	+0.2
3,029,015	+		GFF2976	0.29	+1.2
3,029,015	+		GFF2976	0.29	-1.8
3,029,033	-		GFF2976	0.30	-0.1
3,029,037	+		GFF2976	0.31	+0.1
3,029,084	+		GFF2976	0.34	-1.3
3,029,088	+		GFF2976	0.35	-0.2
3,029,103	-		GFF2976	0.36	+0.4
3,029,140	+		GFF2976	0.39	+0.2
3,029,155	+		GFF2976	0.40	+2.3
3,029,180	-		GFF2976	0.42	+0.0
3,029,181	+		GFF2976	0.42	-2.0
3,029,181	+		GFF2976	0.42	-0.1
3,029,184	-		GFF2976	0.42	-1.0
3,029,189	-		GFF2976	0.43	-2.2
3,029,189	-		GFF2976	0.43	+0.3
3,029,194	-		GFF2976	0.43	-0.5
3,029,220	-		GFF2976	0.45	-0.1
3,029,240	+		GFF2976	0.47	-0.3
3,029,240	+		GFF2976	0.47	-1.8
3,029,248	-		GFF2976	0.47	-0.7
3,029,312	+		GFF2976	0.52	+0.0
3,029,312	+		GFF2976	0.52	-1.2
3,029,312	+		GFF2976	0.52	-1.4
3,029,317	+		GFF2976	0.53	-0.0
3,029,320	-		GFF2976	0.53	+0.5
3,029,330	+		GFF2976	0.54	+1.0
3,029,333	+		GFF2976	0.54	-0.9
3,029,347	+		GFF2976	0.55	-1.9
3,029,377	+		GFF2976	0.58	+1.0
3,029,385	-		GFF2976	0.58	+0.2
3,029,385	-		GFF2976	0.58	-0.3
3,029,387	+		GFF2976	0.58	+0.1
3,029,393	+		GFF2976	0.59	+0.3
3,029,393	+		GFF2976	0.59	+0.7
3,029,423	-		GFF2976	0.61	+0.2
3,029,430	+		GFF2976	0.62	+0.8
3,029,430	+		GFF2976	0.62	+0.7
3,029,430	+		GFF2976	0.62	-0.3
3,029,447	+		GFF2976	0.63	+0.4
3,029,455	-		GFF2976	0.64	-0.5
3,029,455	-		GFF2976	0.64	+1.0
3,029,455	-		GFF2976	0.64	+1.3
3,029,457	+		GFF2976	0.64	+1.2
3,029,484	-		GFF2976	0.66	+0.0
3,029,492	+		GFF2976	0.67	-1.7
3,029,505	-		GFF2976	0.68	-0.3
3,029,505	-		GFF2976	0.68	-0.6
3,029,510	+		GFF2976	0.68	+0.3
3,029,522	-		GFF2976	0.69	-1.1
3,029,535	+		GFF2976	0.70	-0.5
3,029,535	+		GFF2976	0.70	+0.6
3,029,543	-		GFF2976	0.71	-0.6
3,029,543	-		GFF2976	0.71	-0.3
3,029,543	-		GFF2976	0.71	-1.5
3,029,543	-		GFF2976	0.71	-1.0
3,029,543	-		GFF2976	0.71	+0.7
3,029,549	+		GFF2976	0.71	+0.4
3,029,563	+		GFF2976	0.72	-1.3
3,029,563	+		GFF2976	0.72	-0.8
3,029,563	+		GFF2976	0.72	-0.5
3,029,563	+		GFF2976	0.72	-0.3
3,029,563	+		GFF2976	0.72	-1.5
3,029,563	+		GFF2976	0.72	-0.6
3,029,563	+		GFF2976	0.72	+0.3
3,029,563	+		GFF2976	0.72	-0.7
3,029,563	+		GFF2976	0.72	+0.8
3,029,563	+		GFF2976	0.72	-0.4
3,029,563	+		GFF2976	0.72	+1.3
3,029,571	-		GFF2976	0.73	-1.2
3,029,571	-		GFF2976	0.73	-1.3
3,029,571	-		GFF2976	0.73	-0.8
3,029,571	-		GFF2976	0.73	-1.4
3,029,571	-		GFF2976	0.73	-0.2
3,029,571	-		GFF2976	0.73	-1.4
3,029,571	-		GFF2976	0.73	+0.1
3,029,573	+		GFF2976	0.73	+0.2
3,029,573	+		GFF2976	0.73	+0.3
3,029,573	+		GFF2976	0.73	-0.8
3,029,573	+		GFF2976	0.73	-0.1
3,029,581	-		GFF2976	0.74	-0.8
3,029,581	-		GFF2976	0.74	-0.9
3,029,599	-		GFF2976	0.75	-1.6
3,029,606	+		GFF2976	0.76	-0.2
3,029,606	+		GFF2976	0.76	+0.6
3,029,606	+		GFF2976	0.76	-0.6
3,029,606	+		GFF2976	0.76	-1.4
3,029,614	-		GFF2976	0.76	+0.9
3,029,614	-		GFF2976	0.76	-0.6
3,029,614	-		GFF2976	0.76	-0.3
3,029,621	+		GFF2976	0.77	-0.0
3,029,621	+		GFF2976	0.77	+0.5
3,029,621	-		GFF2976	0.77	+0.7
3,029,632	+		GFF2976	0.78	-0.3
3,029,632	+		GFF2976	0.78	-0.9