Strain Fitness in Sphingobium sp. HT1-2 around GFF2922

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,991,383	+		GFF2921	0.59	-1.3
2,991,410	+		GFF2921	0.60	-0.7
2,991,414	-		GFF2921	0.61	+0.5
2,991,422	-		GFF2921	0.61	+0.2
2,991,443	+		GFF2921	0.62	+1.7
2,991,455	+		GFF2921	0.62	+0.4
2,991,455	+		GFF2921	0.62	-0.2
2,991,455	+		GFF2921	0.62	-0.5
2,991,455	+		GFF2921	0.62	-0.6
2,991,455	+		GFF2921	0.62	-1.0
2,991,455	+		GFF2921	0.62	-1.0
2,991,455	+		GFF2921	0.62	+0.7
2,991,455	+		GFF2921	0.62	+1.0
2,991,455	+		GFF2921	0.62	+0.5
2,991,455	+		GFF2921	0.62	-0.4
2,991,455	+		GFF2921	0.62	-2.0
2,991,455	+		GFF2921	0.62	+0.3
2,991,455	+		GFF2921	0.62	-1.4
2,991,455	+		GFF2921	0.62	-0.1
2,991,463	-		GFF2921	0.63	+0.8
2,991,463	-		GFF2921	0.63	+1.0
2,991,463	-		GFF2921	0.63	+1.0
2,991,463	-		GFF2921	0.63	-0.4
2,991,463	-		GFF2921	0.63	-0.3
2,991,463	-		GFF2921	0.63	-0.7
2,991,463	-		GFF2921	0.63	-1.4
2,991,465	+		GFF2921	0.63	+1.0
2,991,488	+		GFF2921	0.64	-2.0
2,991,491	-		GFF2921	0.64	-1.4
2,991,496	-		GFF2921	0.64	-1.1
2,991,496	-		GFF2921	0.64	-0.0
2,991,503	-		GFF2921	0.64	-1.8
2,991,512	+		GFF2921	0.65	+0.0
2,991,512	+		GFF2921	0.65	+2.2
2,991,512	+		GFF2921	0.65	+0.6
2,991,512	+		GFF2921	0.65	-1.6
2,991,512	+		GFF2921	0.65	-1.8
2,991,520	-		GFF2921	0.65	-0.5
2,991,578	+		GFF2921	0.67	+0.8
2,991,581	-		GFF2921	0.67	-1.7
2,991,586	-		GFF2921	0.68	+0.2
2,991,599	+		GFF2921	0.68	+0.4
2,991,607	-		GFF2921	0.68	-0.0
2,991,633	-		GFF2921	0.69	-1.2
2,991,635	+		GFF2921	0.70	-0.1
2,991,645	+		GFF2921	0.70	+0.3
2,991,645	+		GFF2921	0.70	+0.3
2,991,653	-		GFF2921	0.70	-0.4
2,991,653	-		GFF2921	0.70	-1.3
2,991,694	+		GFF2921	0.72	-0.0
2,991,694	+		GFF2921	0.72	-0.4
2,991,704	+		GFF2921	0.72	-0.7
2,991,704	+		GFF2921	0.72	+0.5
2,991,704	+		GFF2921	0.72	+0.6
2,991,704	+		GFF2921	0.72	+0.8
2,991,704	+		GFF2921	0.72	-0.1
2,991,712	-		GFF2921	0.73	+0.0
2,991,712	-		GFF2921	0.73	+0.0
2,991,712	-		GFF2921	0.73	-0.4
2,991,712	-		GFF2921	0.73	-0.8
2,991,712	-		GFF2921	0.73	+0.7
2,991,732	-		GFF2921	0.74	-0.8
2,991,766	-		GFF2921	0.75	+0.4
2,991,766	-		GFF2921	0.75	-0.2
2,991,768	+		GFF2921	0.75	-1.4
2,991,768	+		GFF2921	0.75	+0.7
2,991,768	+		GFF2921	0.75	-1.4
2,991,776	-		GFF2921	0.75	+0.9
2,991,776	-		GFF2921	0.75	+0.2
2,991,784	+		GFF2921	0.76	-0.0
2,991,784	+		GFF2921	0.76	+0.3
2,991,784	+		GFF2921	0.76	-0.3
2,991,784	+		GFF2921	0.76	+2.2
2,991,784	+		GFF2921	0.76	+0.1
2,991,784	+		GFF2921	0.76	+0.1
2,991,785	+		GFF2921	0.76	-1.5
2,991,792	-		GFF2921	0.76	-1.6
2,991,792	-		GFF2921	0.76	+1.1
2,991,792	-		GFF2921	0.76	-0.3
2,991,792	-		GFF2921	0.76	+0.5
2,991,792	-		GFF2921	0.76	-0.2
2,991,792	-		GFF2921	0.76	-0.5
2,991,792	-		GFF2921	0.76	+0.2
2,991,813	-		GFF2921	0.77	-2.5
2,991,824	+		GFF2921	0.77	-0.0
2,991,848	-		GFF2921	0.78	+1.3
2,991,848	-		GFF2921	0.78	-0.3
2,991,883	+		GFF2921	0.80	-0.3
2,991,883	+		GFF2921	0.80	-0.2
2,991,883	+		GFF2921	0.80	-0.0
2,991,883	+		GFF2921	0.80	-2.0
2,991,883	+		GFF2921	0.80	-0.5
2,991,883	+		GFF2921	0.80	-0.4
2,991,883	+		GFF2921	0.80	-0.1
2,991,891	-		GFF2921	0.80	-1.5
2,991,891	-		GFF2921	0.80	+0.2
2,991,891	-		GFF2921	0.80	-1.4
2,991,891	-		GFF2921	0.80	-2.2
2,991,891	-		GFF2921	0.80	+1.2
2,991,901	-		GFF2921	0.80	+1.1
2,991,922	+		GFF2921	0.81	-0.1
2,991,952	+		GFF2921	0.82	-0.6
2,991,952	+		GFF2921	0.82	+0.3
2,991,966	+		GFF2921	0.83	-1.3
2,991,966	+		GFF2921	0.83	+0.3
2,991,974	-		GFF2921	0.83	+0.2
2,991,974	-		GFF2921	0.83	-0.8
2,991,976	+		GFF2921	0.83	-1.4
2,991,976	+		GFF2921	0.83	+0.5
2,991,993	-		GFF2921	0.84	+0.2
2,992,015	+		GFF2921	0.85	+0.3
2,992,021	-		GFF2921	0.85	-1.8
2,992,030	+		GFF2921	0.86	+1.1
2,992,038	-		GFF2921	0.86	-1.4
2,992,039	-		GFF2921	0.86	-1.3
2,992,058	-		GFF2921	0.87	-2.5
2,992,072	+		GFF2921	0.87	-0.7
2,992,127	+		GFF2921	0.90	-0.7
2,992,128	+		GFF2921	0.90	-1.2
2,992,160	-				-2.4
2,992,162	+				+0.2
2,992,173	+				+0.6
2,992,188	+				-1.3
2,992,188	+				+0.4
2,992,197	-				-0.5
2,992,206	+				+1.6
2,992,211	-				+0.1
2,992,286	-				+0.5
2,992,286	-				-0.3
2,992,291	+				-0.5
2,992,320	+				+0.9
2,992,320	+				+0.5
2,992,320	+				+0.4
2,992,328	-				+0.4
2,992,343	-				-0.8
2,992,343	-				+1.3
2,992,348	-				-0.2
2,992,362	-				+0.6
2,992,362	-				-2.0
2,992,367	-				-0.1
2,992,369	+				+0.0
2,992,369	+				-1.4
2,992,369	+				+0.5
2,992,369	+				-0.5
2,992,369	+				-1.1
2,992,371	+				+0.4
2,992,371	+				-1.5
2,992,371	+				-1.0
2,992,377	+				-0.3
2,992,377	-				-0.4
2,992,377	-				-0.9
2,992,377	-				-0.5
2,992,377	-				-2.1
2,992,377	-				-0.8
2,992,377	-				+0.3
2,992,377	-				+1.6
2,992,379	-				+0.8
2,992,430	+				+1.2
2,992,447	+				+0.4
2,992,449	+				-0.1
2,992,449	+				-1.3
2,992,449	+				-0.5
2,992,455	-				+0.4
2,992,457	-				-0.4
2,992,474	+				-0.6
2,992,475	-				+0.0
2,992,484	+				+0.3
2,992,484	+				-1.6
2,992,484	+				+1.0
2,992,490	+				-0.3
2,992,490	+				-1.8
2,992,490	+				+0.3
2,992,490	+				-1.4
2,992,490	+				-0.5
2,992,490	+				-1.2
2,992,490	+				-1.4
2,992,492	-				-1.1
2,992,492	-				+0.7
2,992,492	-				+0.9
2,992,498	-				-0.1
2,992,498	-				+1.1
2,992,504	+				-1.3
2,992,509	+				+0.2
2,992,509	+				-1.3
2,992,509	+				-0.4
2,992,509	+				-0.2
2,992,509	+				-0.3
2,992,517	-				-1.5
2,992,517	-				+0.6
2,992,517	-				-1.3
2,992,517	-				+0.8
2,992,517	-				+0.2
2,992,523	+				-0.7
2,992,531	-				+0.2
2,992,547	-				-0.0
2,992,557	-				-1.1
2,992,572	+				-0.8
2,992,591	+				-1.2
2,992,592	+				+0.2
2,992,600	-				-0.1
2,992,615	+				-0.1
2,992,620	+				+1.2
2,992,623	-				-0.5
2,992,623	-				-0.4
2,992,623	-				+0.6
2,992,628	-				+1.0
2,992,628	-				-0.4
2,992,628	-				+0.2
2,992,628	-				-1.6
2,992,628	-				-0.2
2,992,659	-		GFF2922	0.10	-0.4
2,992,660	+		GFF2922	0.10	-1.8
2,992,674	-		GFF2922	0.11	-1.0
2,992,681	+		GFF2922	0.11	-0.0
2,992,689	-		GFF2922	0.11	+1.2
2,992,699	+		GFF2922	0.12	-1.7
2,992,725	+		GFF2922	0.13	-0.8
2,992,758	+		GFF2922	0.14	-0.1
2,992,784	+		GFF2922	0.15	-0.4
2,992,814	-		GFF2922	0.16	-0.4
2,992,821	-		GFF2922	0.16	-0.5
2,992,823	+		GFF2922	0.16	+0.5
2,992,825	+		GFF2922	0.16	-0.8
2,992,831	-		GFF2922	0.17	+1.1
2,992,831	-		GFF2922	0.17	-0.3
2,992,840	+		GFF2922	0.17	-2.8
2,992,857	-		GFF2922	0.17	-0.3
2,992,857	-		GFF2922	0.17	-0.0
2,992,884	+		GFF2922	0.18	-0.5
2,992,889	+		GFF2922	0.19	+0.4
2,992,892	-		GFF2922	0.19	-1.3
2,992,892	-		GFF2922	0.19	-0.4
2,992,906	+		GFF2922	0.19	-0.6
2,992,907	+		GFF2922	0.19	-0.6
2,992,907	-		GFF2922	0.19	-0.9
2,992,911	+		GFF2922	0.19	-0.4
2,992,913	-		GFF2922	0.19	-1.6
2,992,914	-		GFF2922	0.20	-0.2
2,992,915	-		GFF2922	0.20	+0.4
2,992,919	-		GFF2922	0.20	-0.9
2,992,919	-		GFF2922	0.20	+1.6
2,992,928	-		GFF2922	0.20	+0.7
2,992,946	+		GFF2922	0.21	-1.3
2,992,993	-		GFF2922	0.22	-0.5
2,992,993	-		GFF2922	0.22	-0.6
2,993,007	+		GFF2922	0.23	-1.0
2,993,012	+		GFF2922	0.23	-1.1
2,993,023	+		GFF2922	0.23	-1.9
2,993,041	-		GFF2922	0.24	-0.3
2,993,041	-		GFF2922	0.24	-0.7
2,993,043	+		GFF2922	0.24	-0.6
2,993,080	-		GFF2922	0.25	-1.6
2,993,082	+		GFF2922	0.26	+1.1
2,993,082	+		GFF2922	0.26	-0.0
2,993,086	+		GFF2922	0.26	-0.0
2,993,090	-		GFF2922	0.26	-0.1
2,993,097	+		GFF2922	0.26	+0.8
2,993,097	+		GFF2922	0.26	+0.2
2,993,102	+		GFF2922	0.26	-1.3
2,993,105	-		GFF2922	0.26	+0.1
2,993,105	-		GFF2922	0.26	-0.4
2,993,105	-		GFF2922	0.26	+0.5
2,993,154	+		GFF2922	0.28	-0.6
2,993,155	+		GFF2922	0.28	-1.4
2,993,160	+		GFF2922	0.28	-0.5
2,993,168	-		GFF2922	0.29	-0.4
2,993,168	-		GFF2922	0.29	-0.5
2,993,179	+		GFF2922	0.29	-0.1
2,993,208	-		GFF2922	0.30	+0.6
2,993,228	+		GFF2922	0.31	-0.7
2,993,232	+		GFF2922	0.31	+1.1
2,993,232	+		GFF2922	0.31	-0.1
2,993,232	+		GFF2922	0.31	+0.6
2,993,232	+		GFF2922	0.31	-0.8
2,993,232	+		GFF2922	0.31	+0.3
2,993,232	+		GFF2922	0.31	-1.6
2,993,232	+		GFF2922	0.31	+0.3
2,993,232	+		GFF2922	0.31	-0.5
2,993,232	+		GFF2922	0.31	-0.4
2,993,232	+		GFF2922	0.31	+0.3
2,993,232	+		GFF2922	0.31	+0.6
2,993,232	+		GFF2922	0.31	-1.4
2,993,232	+		GFF2922	0.31	-0.4
2,993,232	+		GFF2922	0.31	+0.4
2,993,232	+		GFF2922	0.31	+1.6
2,993,232	+		GFF2922	0.31	+0.3
2,993,232	+		GFF2922	0.31	+0.4
2,993,232	+		GFF2922	0.31	-1.5
2,993,232	+		GFF2922	0.31	-1.2
2,993,232	+		GFF2922	0.31	-2.8
2,993,232	+		GFF2922	0.31	-1.0
2,993,232	+		GFF2922	0.31	-1.0
2,993,232	+		GFF2922	0.31	+0.6
2,993,232	+		GFF2922	0.31	-1.7
2,993,240	-		GFF2922	0.31	-1.2
2,993,240	-		GFF2922	0.31	-0.6
2,993,240	-		GFF2922	0.31	+0.4
2,993,240	-		GFF2922	0.31	+0.0
2,993,240	-		GFF2922	0.31	+0.3
2,993,240	-		GFF2922	0.31	-0.0
2,993,240	-		GFF2922	0.31	-0.2
2,993,240	-		GFF2922	0.31	-2.0
2,993,240	-		GFF2922	0.31	+0.1
2,993,240	-		GFF2922	0.31	-0.4
2,993,240	-		GFF2922	0.31	-0.3
2,993,240	-		GFF2922	0.31	+0.3
2,993,240	-		GFF2922	0.31	-2.9
2,993,240	-		GFF2922	0.31	+0.3
2,993,240	-		GFF2922	0.31	+1.4
2,993,240	-		GFF2922	0.31	+0.4
2,993,240	-		GFF2922	0.31	-0.5
2,993,240	-		GFF2922	0.31	-0.3
2,993,240	-		GFF2922	0.31	-0.2
2,993,240	-		GFF2922	0.31	+1.0
2,993,240	-		GFF2922	0.31	+0.6
2,993,240	-		GFF2922	0.31	+0.4
2,993,240	-		GFF2922	0.31	+0.2
2,993,240	-		GFF2922	0.31	-0.2
2,993,240	-		GFF2922	0.31	-2.8
2,993,240	-		GFF2922	0.31	+0.1
2,993,240	-		GFF2922	0.31	+1.1
2,993,240	-		GFF2922	0.31	-1.7
2,993,240	-		GFF2922	0.31	+0.9
2,993,245	-		GFF2922	0.31	-2.0
2,993,250	-		GFF2922	0.32	-0.7
2,993,267	-		GFF2922	0.32	+1.1
2,993,282	+		GFF2922	0.33	-0.0
2,993,348	+		GFF2922	0.35	+0.5
2,993,353	+		GFF2922	0.35	-1.4
2,993,356	-		GFF2922	0.35	-0.5
2,993,356	-		GFF2922	0.35	+1.9
2,993,404	+		GFF2922	0.37	+0.2
2,993,413	+		GFF2922	0.37	-0.3
2,993,413	+		GFF2922	0.37	+0.4
2,993,421	-		GFF2922	0.38	-2.9
2,993,421	-		GFF2922	0.38	+0.4
2,993,421	-		GFF2922	0.38	+0.1
2,993,421	-		GFF2922	0.38	-0.5
2,993,421	-		GFF2922	0.38	-0.2
2,993,447	+		GFF2922	0.39	+0.0
2,993,447	+		GFF2922	0.39	-1.8
2,993,450	-		GFF2922	0.39	-0.2
2,993,472	+		GFF2922	0.40	+0.6
2,993,480	-		GFF2922	0.40	-2.0
2,993,480	-		GFF2922	0.40	-0.1
2,993,482	+		GFF2922	0.40	-1.7
2,993,482	+		GFF2922	0.40	-0.7
2,993,490	+		GFF2922	0.40	+0.2
2,993,490	+		GFF2922	0.40	+0.6
2,993,490	+		GFF2922	0.40	-1.1
2,993,490	-		GFF2922	0.40	-0.3
2,993,498	-		GFF2922	0.41	-1.2
2,993,498	-		GFF2922	0.41	-0.3
2,993,498	-		GFF2922	0.41	+0.3
2,993,498	-		GFF2922	0.41	+0.7
2,993,498	-		GFF2922	0.41	-0.8
2,993,498	-		GFF2922	0.41	-0.8
2,993,498	-		GFF2922	0.41	-0.3
2,993,512	+		GFF2922	0.41	-0.1
2,993,512	+		GFF2922	0.41	+0.9
2,993,520	+		GFF2922	0.41	-0.4
2,993,534	+		GFF2922	0.42	+0.8
2,993,534	-		GFF2922	0.42	-1.2
2,993,564	+		GFF2922	0.43	+1.1
2,993,577	-		GFF2922	0.43	+0.4
2,993,578	+		GFF2922	0.43	+0.4
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