Strain Fitness in Sphingobium sp. HT1-2 around GFF2902

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,961,332	-				-1.2
2,961,406	+		GFF2901	0.11	+0.2
2,961,473	-		GFF2901	0.19	-1.6
2,961,572	+		GFF2901	0.31	-1.5
2,961,746	+		GFF2901	0.52	-1.2
2,961,754	-		GFF2901	0.53	-0.4
2,961,754	-		GFF2901	0.53	-1.2
2,962,032	+		GFF2901	0.86	-0.4
2,962,052	+		GFF2901	0.88	+1.6
2,962,052	+		GFF2901	0.88	+0.4
2,962,052	+		GFF2901	0.88	+0.1
2,962,052	+		GFF2901	0.88	+0.4
2,962,052	+		GFF2901	0.88	+0.9
2,962,060	-		GFF2901	0.89	-1.3
2,962,066	-				-0.7
2,962,066	-				-0.4
2,962,095	+				-0.9
2,962,131	-				-1.5
2,962,133	+				+0.5
2,962,141	-				+1.1
2,962,149	+				+1.4
2,962,180	-				-0.6
2,962,193	+				-3.1
2,962,193	+				+1.4
2,962,193	+				+0.6
2,962,193	+				-0.4
2,962,193	+				-0.6
2,962,193	+				-0.8
2,962,198	+				+1.4
2,962,201	-				-0.1
2,962,201	-				-1.3
2,962,201	-				+0.9
2,962,214	+				+0.6
2,962,224	+				-0.0
2,962,224	+				-0.5
2,962,232	+				-2.0
2,962,232	+				+1.1
2,962,232	-				+1.5
2,962,279	+				+0.2
2,962,285	+				-1.0
2,962,320	-				-1.2
2,962,344	+				+0.5
2,962,662	+		GFF2902	0.26	+0.6
2,962,670	-		GFF2902	0.26	-1.3
2,962,670	-		GFF2902	0.26	-0.2
2,962,741	+		GFF2902	0.31	-1.2
2,962,834	+		GFF2902	0.37	-1.7
2,962,852	-		GFF2902	0.38	-1.5
2,963,097	+		GFF2902	0.54	-1.2
2,963,230	+		GFF2902	0.63	-2.0
2,963,319	-		GFF2902	0.69	-0.3
2,963,359	+		GFF2902	0.72	+0.7
2,963,439	-		GFF2902	0.77	-0.6
2,963,470	+		GFF2902	0.79	-0.6
2,963,470	+		GFF2902	0.79	-0.8
2,963,475	+		GFF2902	0.79	-0.5
2,963,478	-		GFF2902	0.80	+0.3
2,963,478	-		GFF2902	0.80	+0.1
2,963,478	-		GFF2902	0.80	-0.4
2,963,480	+		GFF2902	0.80	+1.8
2,963,480	+		GFF2902	0.80	+0.2
2,963,480	+		GFF2902	0.80	-2.2
2,963,488	-		GFF2902	0.80	-0.9
2,963,502	+		GFF2902	0.81	-1.4
2,963,502	-		GFF2902	0.81	-1.5
2,963,525	-		GFF2902	0.83	+0.2
2,963,603	+		GFF2902	0.88	-1.3
2,963,609	+		GFF2902	0.88	-0.1
2,963,609	+		GFF2902	0.88	-2.7
2,963,617	-		GFF2902	0.89	-0.6
2,963,622	-		GFF2902	0.89	+0.2
2,963,633	-		GFF2902	0.90	-1.4
2,963,654	+				-2.4
2,963,654	+				+0.9
2,963,654	+				+1.8
2,963,662	-				+0.0
2,963,662	-				+0.7
2,963,662	-				-0.6
2,963,669	+				+0.4
2,963,669	+				+1.2
2,963,683	+				-1.2
2,963,683	+				-0.8
2,963,683	+				-1.9
2,963,683	+				-0.6
2,963,683	+				+0.3
2,963,691	-				+0.2
2,963,691	-				+0.3
2,963,691	-				+0.6
2,963,691	-				-1.4
2,963,699	+				+0.8
2,963,707	-				-2.0
2,963,742	+				-1.0
2,963,747	+				-1.4
2,963,755	+				-2.1
2,963,755	+				-0.2
2,963,839	+				-1.2
2,963,849	+				+0.6
2,963,849	+				-0.5
2,963,849	+				-0.7
2,963,849	+				-0.5
2,963,849	+				-0.0
2,963,850	+				-0.4
2,963,857	-				-1.4
2,963,857	-				+0.5
2,963,857	-				+1.4
2,963,867	+				-0.4
2,963,893	+				-0.9
2,963,893	+				-0.3
2,963,893	+				-0.1
2,963,893	+				+0.1
2,963,893	+				+0.1
2,963,893	+				+0.7
2,963,893	+				-0.5
2,963,901	-				-0.2
2,963,901	-				+1.2
2,963,901	-				-0.3
2,963,901	-				-1.9
2,963,901	-				+0.4
2,963,901	-				+0.7
2,963,901	-				-1.9
2,963,901	-				-0.0
2,963,901	-				-0.6
2,963,901	-				+0.8
2,963,919	+				-0.6
2,963,919	+				-0.4
2,963,919	+				-0.6
2,963,919	+				-1.3
2,963,919	+				+0.5
2,963,924	+				-0.0
2,963,925	+				+0.9
2,963,927	-				+0.8
2,963,932	-				+0.2
2,963,949	+				-0.6
2,963,952	-				+0.4
2,963,964	+				-0.3
2,963,964	+				+1.1
2,963,972	-				-1.3
2,963,972	-				+0.2
2,963,972	-				+0.1
2,964,002	-				-1.2
2,964,025	+				-0.3
2,964,027	-				-1.2
2,964,035	+				+0.4
2,964,035	-				-0.0
2,964,040	+				-1.8
2,964,047	+				-1.3
2,964,048	-				-1.0
2,964,055	-				-0.7
2,964,055	-				-1.4
2,964,087	-		GFF2903	0.11	+0.4
2,964,097	+		GFF2903	0.12	+1.5
2,964,114	-		GFF2903	0.13	+0.5
2,964,193	+		GFF2903	0.18	+0.4
2,964,195	+		GFF2903	0.18	+0.3
2,964,198	+		GFF2903	0.18	-0.0
2,964,200	+		GFF2903	0.18	+0.5
2,964,208	-		GFF2903	0.19	-0.3
2,964,217	+		GFF2903	0.19	-0.3
2,964,235	-		GFF2903	0.20	-0.4
2,964,241	+		GFF2903	0.21	-0.3
2,964,241	+		GFF2903	0.21	+0.4
2,964,249	-		GFF2903	0.21	-1.6
2,964,310	+		GFF2903	0.25	+0.2
2,964,324	-		GFF2903	0.26	-0.3
2,964,334	-		GFF2903	0.26	-0.6
2,964,362	+		GFF2903	0.28	-0.2
2,964,362	+		GFF2903	0.28	+1.2
2,964,364	-		GFF2903	0.28	-0.8
2,964,411	-		GFF2903	0.31	+1.1
2,964,460	+		GFF2903	0.34	-0.2
2,964,460	+		GFF2903	0.34	-0.4
2,964,460	+		GFF2903	0.34	-0.4
2,964,460	+		GFF2903	0.34	+1.1
2,964,465	+		GFF2903	0.34	+0.6
2,964,468	-		GFF2903	0.35	+1.4
2,964,468	-		GFF2903	0.35	-0.2
2,964,471	+		GFF2903	0.35	+0.6
2,964,471	+		GFF2903	0.35	-1.5
2,964,473	-		GFF2903	0.35	-2.2
2,964,504	-		GFF2903	0.37	-2.2
2,964,545	+		GFF2903	0.39	-1.4
2,964,560	-		GFF2903	0.40	-1.0
2,964,563	-		GFF2903	0.40	-1.9
2,964,565	+		GFF2903	0.41	+0.2
2,964,574	-		GFF2903	0.41	-0.3
2,964,575	+		GFF2903	0.41	+0.4
2,964,587	+		GFF2903	0.42	-0.6
2,964,589	+		GFF2903	0.42	-0.3
2,964,621	+		GFF2903	0.44	+0.7
2,964,621	+		GFF2903	0.44	+1.2
2,964,621	+		GFF2903	0.44	+0.7
2,964,622	+		GFF2903	0.44	+0.1
2,964,623	+		GFF2903	0.44	+0.3
2,964,628	+		GFF2903	0.44	-2.8
2,964,628	+		GFF2903	0.44	-0.4
2,964,629	-		GFF2903	0.44	+0.6
2,964,629	-		GFF2903	0.44	+0.2
2,964,629	-		GFF2903	0.44	-2.2
2,964,636	-		GFF2903	0.45	+2.6
2,964,636	-		GFF2903	0.45	-0.4
2,964,646	+		GFF2903	0.46	-0.5
2,964,667	+		GFF2903	0.47	-0.2
2,964,679	+		GFF2903	0.48	-0.6
2,964,707	+		GFF2903	0.49	-0.4
2,964,707	+		GFF2903	0.49	-0.3
2,964,707	+		GFF2903	0.49	-0.1
2,964,715	-		GFF2903	0.50	-0.3
2,964,720	-		GFF2903	0.50	-0.6
2,964,732	+		GFF2903	0.51	+0.6
2,964,742	-		GFF2903	0.51	-0.7
2,964,750	-		GFF2903	0.52	-0.0
2,964,769	+		GFF2903	0.53	+0.3
2,964,769	-		GFF2903	0.53	+2.0
2,964,777	-		GFF2903	0.54	-1.3
2,964,777	-		GFF2903	0.54	-2.2
2,964,782	-		GFF2903	0.54	+0.6