Strain Fitness in Sphingobium sp. HT1-2 around GFF2896

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,956,422	-		GFF2895	0.62	-0.8
2,956,427	-		GFF2895	0.62	-1.7
2,956,448	-		GFF2895	0.63	-0.3
2,956,452	+		GFF2895	0.63	-0.6
2,956,459	-		GFF2895	0.64	+0.3
2,956,485	+		GFF2895	0.65	-0.0
2,956,485	+		GFF2895	0.65	-0.4
2,956,487	+		GFF2895	0.65	-2.0
2,956,495	-		GFF2895	0.65	-0.6
2,956,495	-		GFF2895	0.65	-0.9
2,956,495	-		GFF2895	0.65	-0.2
2,956,526	+		GFF2895	0.67	+0.7
2,956,554	-		GFF2895	0.68	-2.0
2,956,589	-		GFF2895	0.70	-0.5
2,956,589	-		GFF2895	0.70	+1.5
2,956,589	-		GFF2895	0.70	+1.0
2,956,601	-		GFF2895	0.70	+0.5
2,956,610	+		GFF2895	0.70	+0.4
2,956,617	-		GFF2895	0.71	-0.3
2,956,617	-		GFF2895	0.71	-0.2
2,956,622	-		GFF2895	0.71	+0.2
2,956,632	+		GFF2895	0.71	-0.4
2,956,632	+		GFF2895	0.71	+0.6
2,956,632	+		GFF2895	0.71	-0.5
2,956,640	-		GFF2895	0.72	+0.1
2,956,640	-		GFF2895	0.72	+0.0
2,956,640	-		GFF2895	0.72	+0.4
2,956,640	-		GFF2895	0.72	-1.5
2,956,640	-		GFF2895	0.72	-1.3
2,956,640	-		GFF2895	0.72	-1.6
2,956,640	-		GFF2895	0.72	-0.5
2,956,644	+		GFF2895	0.72	-0.0
2,956,652	-		GFF2895	0.72	-0.8
2,956,652	-		GFF2895	0.72	-0.3
2,956,656	+		GFF2895	0.73	+0.5
2,956,720	-		GFF2895	0.75	-0.5
2,956,748	-		GFF2895	0.77	-0.6
2,956,770	+		GFF2895	0.78	+0.9
2,956,778	-		GFF2895	0.78	-0.7
2,956,778	-		GFF2895	0.78	+0.3
2,956,778	-		GFF2895	0.78	-0.6
2,956,788	+		GFF2895	0.78	+0.9
2,956,788	+		GFF2895	0.78	+0.3
2,956,788	+		GFF2895	0.78	+0.2
2,956,796	-		GFF2895	0.79	+1.0
2,956,796	-		GFF2895	0.79	+1.1
2,956,796	-		GFF2895	0.79	+0.2
2,956,796	-		GFF2895	0.79	-1.6
2,956,796	-		GFF2895	0.79	+0.2
2,956,796	-		GFF2895	0.79	-1.3
2,956,796	-		GFF2895	0.79	+0.8
2,956,799	-		GFF2895	0.79	+0.2
2,956,801	-		GFF2895	0.79	+0.2
2,956,834	-		GFF2895	0.81	-0.4
2,956,835	-		GFF2895	0.81	-1.0
2,956,866	-		GFF2895	0.82	-0.4
2,956,888	+		GFF2895	0.83	-0.9
2,956,937	+		GFF2895	0.85	+0.5
2,956,937	+		GFF2895	0.85	-1.7
2,956,943	+		GFF2895	0.85	-1.0
2,956,945	-		GFF2895	0.86	-1.5
2,956,979	+		GFF2895	0.87	-0.4
2,956,987	-		GFF2895	0.87	+0.9
2,956,992	-		GFF2895	0.88	+1.5
2,957,003	+		GFF2895	0.88	-0.5
2,957,003	+		GFF2895	0.88	+0.2
2,957,003	+		GFF2895	0.88	-3.1
2,957,003	+		GFF2895	0.88	+0.4
2,957,011	-		GFF2895	0.88	+0.2
2,957,011	-		GFF2895	0.88	-1.0
2,957,011	-		GFF2895	0.88	+0.1
2,957,011	-		GFF2895	0.88	-1.9
2,957,011	-		GFF2895	0.88	+1.8
2,957,011	-		GFF2895	0.88	+0.7
2,957,019	-		GFF2895	0.89	-0.2
2,957,031	+		GFF2895	0.89	+0.8
2,957,067	+				+0.1
2,957,082	-				-0.3
2,957,088	-				-2.2
2,957,106	+				-0.8
2,957,106	-				+0.4
2,957,111	+				-1.4
2,957,111	+				+0.4
2,957,111	+				+0.7
2,957,119	-				+0.1
2,957,119	-				-0.2
2,957,130	+				+0.7
2,957,130	+				+0.1
2,957,138	-				+0.6
2,957,138	-				+0.1
2,957,153	-				-2.0
2,957,162	-				+0.6
2,957,205	+				-0.3
2,957,205	+				-0.7
2,957,205	+				+1.2
2,957,210	+				-0.3
2,957,210	+				-0.2
2,957,210	+				-1.8
2,957,210	+				+0.8
2,957,210	+				-0.5
2,957,210	+				+0.4
2,957,210	+				-2.2
2,957,210	+				+0.3
2,957,210	+				-0.4
2,957,210	+				+0.3
2,957,213	-				+0.0
2,957,213	-				-0.5
2,957,213	-				-0.9
2,957,213	-				-0.8
2,957,218	-				-0.7
2,957,218	-				-0.1
2,957,218	-				-0.6
2,957,218	-				-1.2
2,957,218	-				+0.3
2,957,218	-				-0.6
2,957,218	-				-1.2
2,957,218	-				-0.1
2,957,218	-				+0.7
2,957,218	-				+0.7
2,957,218	-				+0.8
2,957,218	-				+0.6
2,957,218	-				+0.2
2,957,220	+				-1.8
2,957,238	+				-1.9
2,957,241	+				+0.1
2,957,246	-				-0.7
2,957,253	+				-0.1
2,957,261	+				+0.9
2,957,261	+				-0.6
2,957,269	-				-0.4
2,957,269	-				+0.4
2,957,269	-				+0.6
2,957,269	-				-1.4
2,957,269	-				-0.4
2,957,269	-				+0.6
2,957,269	-				-1.2
2,957,269	-				-0.7
2,957,269	-				-0.3
2,957,274	-				+0.4
2,957,274	-				+0.6
2,957,274	-				-0.2
2,957,274	-				-0.7
2,957,274	-				-2.4
2,957,276	+				+0.7
2,957,282	+				+0.6
2,957,284	-				-2.2
2,957,284	-				+0.2
2,957,284	-				+0.8
2,957,284	-				-0.6
2,957,284	-				-0.8
2,957,284	-				+0.0
2,957,308	-				+0.0
2,957,308	-				-0.9
2,957,315	+				-0.2
2,957,323	-				-1.2
2,957,330	-				+0.5
2,957,342	+				-1.8
2,957,352	+				-0.4
2,957,352	+				+0.2
2,957,352	+				-0.8
2,957,355	-				-1.1
2,957,355	-				-0.4
2,957,357	+				-0.4
2,957,357	+				-2.1
2,957,357	+				+0.2
2,957,357	+				+0.8
2,957,358	+				-0.9
2,957,358	+				-0.4
2,957,360	-				+0.4
2,957,360	-				-1.2
2,957,360	-				-0.1
2,957,360	-				+0.0
2,957,360	-				-0.1
2,957,360	-				+0.6
2,957,360	-				-0.2
2,957,360	-				+0.8
2,957,365	-				-1.9
2,957,365	-				-0.3
2,957,365	-				-1.1
2,957,365	-				-1.3
2,957,365	-				-0.7
2,957,365	-				+0.5
2,957,366	-				-0.8
2,957,366	-				+0.8
2,957,377	+				-0.8
2,957,390	-				+0.4
2,957,391	-				+1.8
2,957,399	+				-0.5
2,957,409	+		GFF2896	0.11	-0.9
2,957,409	+		GFF2896	0.11	-1.2
2,957,409	+		GFF2896	0.11	+0.3
2,957,417	+		GFF2896	0.13	-0.9
2,957,417	-		GFF2896	0.13	-2.0
2,957,417	-		GFF2896	0.13	+0.5
2,957,417	-		GFF2896	0.13	-2.2
2,957,417	-		GFF2896	0.13	-0.3
2,957,420	-		GFF2896	0.14	-2.5
2,957,427	+		GFF2896	0.15	-1.4
2,957,427	+		GFF2896	0.15	-0.2
2,957,427	+		GFF2896	0.15	-1.3
2,957,427	+		GFF2896	0.15	-0.5
2,957,427	+		GFF2896	0.15	+1.0
2,957,427	+		GFF2896	0.15	-1.4
2,957,427	+		GFF2896	0.15	+0.3
2,957,427	+		GFF2896	0.15	-2.5
2,957,429	+		GFF2896	0.16	+0.3
2,957,435	-		GFF2896	0.17	+0.0
2,957,435	-		GFF2896	0.17	-0.1
2,957,435	-		GFF2896	0.17	+0.2
2,957,435	-		GFF2896	0.17	-0.5
2,957,435	-		GFF2896	0.17	+0.4
2,957,435	-		GFF2896	0.17	-2.3
2,957,435	-		GFF2896	0.17	-0.9
2,957,435	-		GFF2896	0.17	-1.3
2,957,435	-		GFF2896	0.17	-1.5
2,957,435	-		GFF2896	0.17	-0.2
2,957,435	-		GFF2896	0.17	-2.1
2,957,435	-		GFF2896	0.17	+0.2
2,957,462	+		GFF2896	0.23	+1.4
2,957,476	+		GFF2896	0.27	-1.9
2,957,476	+		GFF2896	0.27	-0.1
2,957,482	+		GFF2896	0.28	-1.6
2,957,486	+		GFF2896	0.29	+1.1
2,957,486	+		GFF2896	0.29	-1.7
2,957,494	-		GFF2896	0.31	+0.7
2,957,504	-		GFF2896	0.33	-0.2
2,957,522	+		GFF2896	0.37	+0.1
2,957,525	-		GFF2896	0.38	-0.8
2,957,530	-		GFF2896	0.39	-1.2
2,957,530	-		GFF2896	0.39	+0.4
2,957,530	-		GFF2896	0.39	-1.0
2,957,530	-		GFF2896	0.39	+0.5
2,957,530	-		GFF2896	0.39	-0.2
2,957,532	-		GFF2896	0.40	-0.6
2,957,532	-		GFF2896	0.40	+0.6
2,957,558	+		GFF2896	0.46	-0.1
2,957,558	+		GFF2896	0.46	-2.1
2,957,576	-		GFF2896	0.50	-0.8
2,957,581	+		GFF2896	0.51	-0.5
2,957,581	+		GFF2896	0.51	+1.5
2,957,581	+		GFF2896	0.51	+0.5
2,957,589	-		GFF2896	0.53	-0.5
2,957,656	-		GFF2896	0.68	+0.6
2,957,667	-		GFF2896	0.71	+0.7
2,957,690	-		GFF2896	0.76	+0.1
2,957,724	+		GFF2896	0.84	-0.4
2,957,732	-		GFF2896	0.86	-2.7
2,957,732	-		GFF2896	0.86	+0.3
2,957,732	-		GFF2896	0.86	-0.3
2,957,732	-		GFF2896	0.86	-0.5
2,957,734	+		GFF2896	0.86	+1.4
2,957,749	-		GFF2896	0.89	+0.9
2,957,766	+				+0.3
2,957,766	+				-0.4
2,957,766	+				+1.0
2,957,766	+				-0.1
2,957,774	-				-0.2
2,957,774	-				+0.0
2,957,774	-				-0.4
2,957,774	-				-0.4
2,957,774	-				-1.6
2,957,791	+				+0.8
2,957,791	-				-1.1
2,957,802	+				-0.5
2,957,807	+				+0.7
2,957,807	+				+0.1
2,957,807	+				-2.0
2,957,807	+				+0.0
2,957,810	-				-0.1
2,957,810	-				+0.5
2,957,818	+				+0.7
2,957,826	-				-2.0
2,957,826	-				+0.6
2,957,826	-				-1.1
2,957,828	+				-1.6
2,957,836	-				-1.1
2,957,836	-				+0.9
2,957,836	-				+0.3
2,957,836	-				+1.0
2,957,841	+				-0.6
2,957,848	+				-0.2
2,957,864	+				-1.4
2,957,875	+				-1.3
2,957,875	+				-2.0
2,957,877	+				-0.8
2,957,883	-				-1.2
2,957,883	-				+0.4
2,957,895	+				-1.7
2,957,947	-				+1.0
2,957,949	-				+0.5
2,957,961	+				-0.5
2,957,962	-				-0.7
2,957,964	-				+1.0
2,957,964	-				-3.0
2,957,994	-				-1.3
2,958,000	-				+0.4
2,958,010	-				-2.6
2,958,010	-				-0.2
2,958,012	+				+0.7
2,958,049	-		GFF2897	0.14	+0.6
2,958,053	+		GFF2897	0.14	+0.4
2,958,053	+		GFF2897	0.14	-1.2
2,958,061	-		GFF2897	0.15	-0.4
2,958,061	-		GFF2897	0.15	+0.2
2,958,061	-		GFF2897	0.15	+0.9
2,958,090	-		GFF2897	0.20	-0.8
2,958,090	-		GFF2897	0.20	-0.1
2,958,093	+		GFF2897	0.20	+1.0
2,958,101	-		GFF2897	0.21	+0.5
2,958,101	-		GFF2897	0.21	-1.5
2,958,140	-		GFF2897	0.27	-1.7
2,958,151	-		GFF2897	0.29	-1.7
2,958,157	-		GFF2897	0.29	-1.6
2,958,160	+		GFF2897	0.30	+0.3
2,958,190	-		GFF2897	0.34	-0.9
2,958,208	+		GFF2897	0.37	-2.5
2,958,219	-		GFF2897	0.39	-0.8
2,958,235	-		GFF2897	0.41	+0.0
2,958,235	-		GFF2897	0.41	-2.8
2,958,294	+		GFF2897	0.50	+0.3
2,958,294	+		GFF2897	0.50	-1.4
2,958,294	+		GFF2897	0.50	-0.9
2,958,294	+		GFF2897	0.50	+0.3
2,958,294	+		GFF2897	0.50	-1.3
2,958,294	+		GFF2897	0.50	-2.1
2,958,302	-		GFF2897	0.51	+1.9
2,958,302	-		GFF2897	0.51	+0.3
2,958,302	-		GFF2897	0.51	+0.1
2,958,302	-		GFF2897	0.51	-1.4
2,958,302	-		GFF2897	0.51	-0.6
2,958,302	-		GFF2897	0.51	+0.2
2,958,302	-		GFF2897	0.51	+1.2
2,958,335	-		GFF2897	0.56	-0.6
2,958,347	+		GFF2897	0.58	+0.9
2,958,352	+		GFF2897	0.58	+0.2
2,958,352	+		GFF2897	0.58	-0.4
2,958,352	+		GFF2897	0.58	+0.7
2,958,352	+		GFF2897	0.58	-0.2
2,958,355	-		GFF2897	0.59	+0.2
2,958,355	-		GFF2897	0.59	-0.5
2,958,360	-		GFF2897	0.59	+0.0
2,958,360	-		GFF2897	0.59	+0.8
2,958,360	-		GFF2897	0.59	-0.4
2,958,360	-		GFF2897	0.59	-0.5
2,958,360	-		GFF2897	0.59	+1.4
2,958,360	-		GFF2897	0.59	-1.9
2,958,360	-		GFF2897	0.59	-0.4
2,958,360	-		GFF2897	0.59	+0.4
2,958,389	+		GFF2897	0.64	-0.2
2,958,404	+		GFF2897	0.66	+1.1
2,958,412	-		GFF2897	0.67	+0.2
2,958,412	-		GFF2897	0.67	+1.2
2,958,415	+		GFF2897	0.68	+0.2
2,958,441	+		GFF2897	0.71	-1.3
2,958,449	+		GFF2897	0.73	-0.2
2,958,449	+		GFF2897	0.73	-0.1
2,958,449	-		GFF2897	0.73	+1.2
2,958,456	+		GFF2897	0.74	-1.3
2,958,456	+		GFF2897	0.74	+0.0
2,958,457	-		GFF2897	0.74	-1.3
2,958,457	-		GFF2897	0.74	-0.2
2,958,457	-		GFF2897	0.74	+0.4
2,958,457	-		GFF2897	0.74	-1.3
2,958,457	-		GFF2897	0.74	+0.6
2,958,457	-		GFF2897	0.74	+0.4
2,958,462	-		GFF2897	0.74	+0.2
2,958,464	-		GFF2897	0.75	-1.8
2,958,474	-		GFF2897	0.76	-0.1
2,958,474	-		GFF2897	0.76	+1.6
2,958,474	-		GFF2897	0.76	+1.2
2,958,474	-		GFF2897	0.76	+0.1
2,958,474	-		GFF2897	0.76	+0.9
2,958,485	+		GFF2897	0.78	-0.2
2,958,490	+		GFF2897	0.79	-0.5
2,958,498	-		GFF2897	0.80	-0.0
2,958,506	+		GFF2897	0.81	-0.4
2,958,511	+		GFF2897	0.82	+0.5
2,958,519	-		GFF2897	0.83	+0.9
2,958,521	+		GFF2897	0.83	+0.1
2,958,537	+		GFF2897	0.86	-0.5
2,958,538	+		GFF2897	0.86	-0.3
2,958,538	+		GFF2897	0.86	-1.0
2,958,538	+		GFF2897	0.86	-2.5
2,958,543	+		GFF2897	0.86	-1.6
2,958,545	-		GFF2897	0.87	-0.9
2,958,546	-		GFF2897	0.87	-0.2
2,958,565	+		GFF2897	0.90	+1.3
2,958,568	-				-1.0
2,958,576	-				+0.0
2,958,584	+				-0.9
2,958,587	-				-1.0
2,958,587	-				+0.5
2,958,587	-				-0.3
2,958,587	-				-0.9
2,958,587	-				-0.2
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2,958,603	-				+0.3
2,958,603	-				-0.4
2,958,609	-				+0.6
2,958,647	-				-0.8
2,958,656	-				+0.6
2,958,668	+				-1.3
2,958,669	+				-1.1
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2,958,670	+				-1.2
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2,958,670	+				+0.4
2,958,675	+				+1.3
2,958,676	-				+0.2
2,958,676	-				+0.8
2,958,677	-				-0.9
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2,958,677	-				-0.3
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2,958,678	-				-0.1
2,958,678	-				+0.7
2,958,678	-				+0.9
2,958,678	-				-2.3
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2,958,678	-				-1.0
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2,958,683	-				-0.1
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2,958,700	+				-1.9
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2,958,725	-				+0.0
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2,958,725	-				-1.2
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2,958,732	+		GFF2898	0.10	+0.1
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2,958,732	+		GFF2898	0.10	-0.7
2,958,739	+		GFF2898	0.12	-3.3
2,958,749	+		GFF2898	0.14	+0.3
2,958,749	+		GFF2898	0.14	-1.2
2,958,749	+		GFF2898	0.14	+0.0
2,958,790	+		GFF2898	0.23	-2.0
2,958,794	+		GFF2898	0.24	-0.5