Strain Fitness in Sphingobium sp. HT1-2 around GFF2866

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,923,155	+		GFF2865	0.12	+0.5
2,923,176	+		GFF2865	0.14	+1.3
2,923,197	-		GFF2865	0.16	+0.6
2,923,199	+		GFF2865	0.16	-0.4
2,923,208	+		GFF2865	0.17	+0.2
2,923,244	+		GFF2865	0.21	-1.3
2,923,252	-		GFF2865	0.22	+0.5
2,923,252	-		GFF2865	0.22	-1.3
2,923,254	-		GFF2865	0.22	-2.3
2,923,282	+		GFF2865	0.25	+0.4
2,923,289	-		GFF2865	0.26	-0.2
2,923,290	-		GFF2865	0.26	-0.5
2,923,290	-		GFF2865	0.26	+0.6
2,923,320	+		GFF2865	0.29	-1.3
2,923,328	-		GFF2865	0.30	+0.8
2,923,329	-		GFF2865	0.30	-0.7
2,923,335	+		GFF2865	0.31	-0.5
2,923,342	+		GFF2865	0.32	+0.2
2,923,342	+		GFF2865	0.32	+0.7
2,923,342	+		GFF2865	0.32	-0.8
2,923,350	-		GFF2865	0.32	+0.3
2,923,352	+		GFF2865	0.33	-0.9
2,923,369	+		GFF2865	0.35	-2.8
2,923,369	-		GFF2865	0.35	-0.2
2,923,370	-		GFF2865	0.35	-0.7
2,923,370	-		GFF2865	0.35	-1.0
2,923,374	+		GFF2865	0.35	-2.4
2,923,379	+		GFF2865	0.36	+0.3
2,923,379	+		GFF2865	0.36	+0.7
2,923,382	-		GFF2865	0.36	-0.9
2,923,382	-		GFF2865	0.36	-0.6
2,923,387	-		GFF2865	0.36	+0.4
2,923,387	-		GFF2865	0.36	-1.1
2,923,423	+		GFF2865	0.40	+0.2
2,923,445	+		GFF2865	0.43	-0.3
2,923,453	-		GFF2865	0.43	-1.7
2,923,453	-		GFF2865	0.43	-2.1
2,923,453	-		GFF2865	0.43	+0.6
2,923,453	-		GFF2865	0.43	+1.1
2,923,475	+		GFF2865	0.46	-0.6
2,923,486	+		GFF2865	0.47	-0.0
2,923,486	+		GFF2865	0.47	+0.3
2,923,486	+		GFF2865	0.47	-0.5
2,923,486	+		GFF2865	0.47	-0.2
2,923,486	+		GFF2865	0.47	-0.6
2,923,486	-		GFF2865	0.47	-0.6
2,923,494	-		GFF2865	0.48	-1.3
2,923,494	-		GFF2865	0.48	-1.9
2,923,494	-		GFF2865	0.48	+1.1
2,923,494	-		GFF2865	0.48	-0.3
2,923,494	-		GFF2865	0.48	-0.9
2,923,494	-		GFF2865	0.48	+0.4
2,923,497	-		GFF2865	0.48	-0.2
2,923,504	+		GFF2865	0.49	-0.5
2,923,504	+		GFF2865	0.49	+0.8
2,923,511	-		GFF2865	0.50	+0.5
2,923,518	-		GFF2865	0.50	-0.5
2,923,550	-		GFF2865	0.54	+0.4
2,923,587	+		GFF2865	0.58	-0.1
2,923,587	+		GFF2865	0.58	-0.4
2,923,587	+		GFF2865	0.58	-0.2
2,923,595	-		GFF2865	0.58	-0.0
2,923,610	+		GFF2865	0.60	+0.0
2,923,617	-		GFF2865	0.61	+0.0
2,923,623	+		GFF2865	0.61	+0.7
2,923,630	-		GFF2865	0.62	-0.4
2,923,636	+		GFF2865	0.63	+0.8
2,923,641	-		GFF2865	0.63	+0.2
2,923,653	-		GFF2865	0.65	-0.4
2,923,661	+		GFF2865	0.65	+0.2
2,923,677	-		GFF2865	0.67	+0.3
2,923,687	+		GFF2865	0.68	-0.6
2,923,695	-		GFF2865	0.69	-2.0
2,923,700	-		GFF2865	0.70	-0.1
2,923,741	-		GFF2865	0.74	+0.3
2,923,754	+		GFF2865	0.75	+0.2
2,923,764	+		GFF2865	0.76	-0.1
2,923,773	-		GFF2865	0.77	+0.6
2,923,774	+		GFF2865	0.77	-0.9
2,923,774	+		GFF2865	0.77	-0.7
2,923,782	-		GFF2865	0.78	+0.6
2,923,783	-		GFF2865	0.78	+0.5
2,923,826	+		GFF2865	0.83	+0.6
2,923,828	-		GFF2865	0.83	+0.1
2,923,828	-		GFF2865	0.83	+0.2
2,923,834	-		GFF2865	0.84	+0.6
2,923,877	+		GFF2865	0.88	+0.1
2,923,883	+		GFF2865	0.89	-0.9
2,923,901	+				-1.3
2,923,901	+				-1.0
2,923,963	+				-0.5
2,923,976	-				-2.3
2,923,981	-				+0.6
2,923,981	-				-1.4
2,923,981	-				+0.8
2,923,999	+				+1.9
2,924,013	+				+1.2
2,924,013	+				+0.2
2,924,021	-				-1.2
2,924,023	+				-0.8
2,924,023	+				-0.4
2,924,023	+				+0.4
2,924,023	+				-1.4
2,924,023	+				-0.3
2,924,025	+				+1.6
2,924,031	-				-0.8
2,924,031	-				-0.0
2,924,031	-				+1.0
2,924,031	-				-0.3
2,924,040	-				-0.5
2,924,046	+				-1.3
2,924,048	+				+0.8
2,924,048	+				-0.7
2,924,048	+				-0.0
2,924,048	+				-0.1
2,924,048	+				-1.0
2,924,048	+				-0.5
2,924,048	+				-0.9
2,924,048	+				-0.8
2,924,048	+				-0.7
2,924,048	+				-1.1
2,924,056	-				-2.8
2,924,056	-				-0.5
2,924,056	-				+0.7
2,924,056	-				-1.2
2,924,056	-				-0.5
2,924,056	-				+1.4
2,924,056	-				-1.0
2,924,056	-				-0.6
2,924,064	+				-0.2
2,924,080	-				+0.4
2,924,092	-				-1.3
2,924,095	+				-1.1
2,924,103	-				+0.2
2,924,103	-				-0.4
2,924,103	-				+0.3
2,924,104	-				-1.0
2,924,107	+				+0.3
2,924,109	+				+0.1
2,924,112	-				+0.2
2,924,115	-				-1.6
2,924,115	-				-0.7
2,924,115	-				+0.8
2,924,117	-				-0.3
2,924,124	-				+0.4
2,924,124	-				-2.1
2,924,206	-				-0.3
2,924,208	-				-0.2
2,924,218	+				+1.0
2,924,226	-				-0.7
2,924,233	-		GFF2866	0.10	-0.9
2,924,267	+		GFF2866	0.14	+0.8
2,924,284	-		GFF2866	0.16	+0.3
2,924,284	-		GFF2866	0.16	-1.2
2,924,284	-		GFF2866	0.16	+0.7
2,924,299	+		GFF2866	0.18	-0.4
2,924,307	-		GFF2866	0.19	-0.4
2,924,324	+		GFF2866	0.21	+0.9
2,924,380	+		GFF2866	0.28	-0.8
2,924,380	+		GFF2866	0.28	-0.8
2,924,380	+		GFF2866	0.28	+0.3
2,924,385	+		GFF2866	0.28	-0.6
2,924,388	-		GFF2866	0.29	+0.2
2,924,388	-		GFF2866	0.29	-0.4
2,924,388	-		GFF2866	0.29	-1.1
2,924,388	-		GFF2866	0.29	-0.0
2,924,390	+		GFF2866	0.29	+0.8
2,924,390	+		GFF2866	0.29	+1.5
2,924,393	-		GFF2866	0.29	+1.1
2,924,393	-		GFF2866	0.29	-0.4
2,924,393	-		GFF2866	0.29	-0.1
2,924,393	-		GFF2866	0.29	-1.3
2,924,393	-		GFF2866	0.29	-0.3
2,924,398	-		GFF2866	0.30	-1.7
2,924,398	-		GFF2866	0.30	-0.6
2,924,404	+		GFF2866	0.31	-0.0
2,924,412	-		GFF2866	0.31	+0.1
2,924,412	-		GFF2866	0.31	-0.9
2,924,412	-		GFF2866	0.31	+0.4
2,924,412	-		GFF2866	0.31	-0.6
2,924,412	-		GFF2866	0.31	+0.1
2,924,434	+		GFF2866	0.34	+0.3
2,924,434	+		GFF2866	0.34	-1.6
2,924,434	+		GFF2866	0.34	+1.9
2,924,434	+		GFF2866	0.34	-0.0
2,924,434	+		GFF2866	0.34	-2.0
2,924,439	+		GFF2866	0.35	-0.4
2,924,439	+		GFF2866	0.35	-0.6
2,924,442	-		GFF2866	0.35	-1.3
2,924,447	-		GFF2866	0.36	-0.4
2,924,447	-		GFF2866	0.36	-0.9
2,924,456	+		GFF2866	0.37	-0.4
2,924,456	-		GFF2866	0.37	-1.4
2,924,464	-		GFF2866	0.38	+1.5
2,924,466	+		GFF2866	0.38	-0.5
2,924,466	+		GFF2866	0.38	-1.0
2,924,466	+		GFF2866	0.38	-0.3
2,924,466	+		GFF2866	0.38	-0.1
2,924,466	+		GFF2866	0.38	-0.1
2,924,466	+		GFF2866	0.38	+0.3
2,924,474	-		GFF2866	0.39	-1.1
2,924,474	-		GFF2866	0.39	+0.7
2,924,474	-		GFF2866	0.39	+1.2
2,924,474	-		GFF2866	0.39	-0.0
2,924,474	-		GFF2866	0.39	+0.9
2,924,474	-		GFF2866	0.39	-0.6
2,924,474	-		GFF2866	0.39	+0.5
2,924,474	-		GFF2866	0.39	+0.6
2,924,474	-		GFF2866	0.39	+0.8
2,924,474	-		GFF2866	0.39	+0.4
2,924,474	-		GFF2866	0.39	-0.3
2,924,474	-		GFF2866	0.39	-0.1
2,924,489	-		GFF2866	0.41	-1.0
2,924,495	-		GFF2866	0.41	-0.9
2,924,530	+		GFF2866	0.45	-0.3
2,924,530	-		GFF2866	0.45	+0.4
2,924,540	-		GFF2866	0.47	+0.8
2,924,548	-		GFF2866	0.47	+0.8
2,924,551	+		GFF2866	0.48	+0.7
2,924,557	-		GFF2866	0.49	-1.2
2,924,575	+		GFF2866	0.51	-1.5
2,924,575	+		GFF2866	0.51	-0.0
2,924,583	-		GFF2866	0.52	+0.6
2,924,592	+		GFF2866	0.53	-0.3
2,924,610	+		GFF2866	0.55	-0.6
2,924,615	+		GFF2866	0.55	-0.3
2,924,618	-		GFF2866	0.56	+0.4
2,924,619	-		GFF2866	0.56	-0.9
2,924,623	-		GFF2866	0.56	-3.8
2,924,629	-		GFF2866	0.57	-0.6
2,924,635	-		GFF2866	0.58	-0.2
2,924,673	+		GFF2866	0.62	+0.5
2,924,681	-		GFF2866	0.63	-0.6
2,924,685	+		GFF2866	0.64	-1.2
2,924,686	-		GFF2866	0.64	+0.2
2,924,691	+		GFF2866	0.64	+0.4
2,924,691	+		GFF2866	0.64	+0.4
2,924,694	-		GFF2866	0.65	+1.1
2,924,696	+		GFF2866	0.65	+0.3
2,924,699	-		GFF2866	0.65	+0.3
2,924,699	-		GFF2866	0.65	-0.0
2,924,704	-		GFF2866	0.66	-1.7
2,924,724	-		GFF2866	0.68	+0.9
2,924,734	+		GFF2866	0.69	-0.7
2,924,734	+		GFF2866	0.69	-0.1
2,924,739	+		GFF2866	0.70	-0.4
2,924,740	-		GFF2866	0.70	+0.7
2,924,740	-		GFF2866	0.70	+0.6
2,924,742	-		GFF2866	0.70	-0.6
2,924,742	-		GFF2866	0.70	+0.5
2,924,752	+		GFF2866	0.71	-0.9
2,924,752	+		GFF2866	0.71	+0.6
2,924,760	+		GFF2866	0.72	+1.1
2,924,760	-		GFF2866	0.72	-1.2
2,924,760	-		GFF2866	0.72	-2.1
2,924,784	+		GFF2866	0.75	-1.1
2,924,784	+		GFF2866	0.75	-1.1
2,924,814	+		GFF2866	0.79	-0.4
2,924,814	+		GFF2866	0.79	-1.2
2,924,832	-		GFF2866	0.81	-1.6
2,924,856	-		GFF2866	0.84	-2.0
2,924,865	+		GFF2866	0.85	-1.4
2,924,871	-		GFF2866	0.86	-0.0
2,924,888	-		GFF2866	0.88	-1.5
2,924,905	+		GFF2866	0.90	+1.7
2,924,911	+				+0.3
2,924,920	+				+0.2
2,924,931	+				-0.3
2,924,931	+				-0.7
2,924,931	+				-0.5
2,924,931	+				-1.7
2,924,931	+				-0.7
2,924,931	-				-0.2
2,924,939	-				+0.4
2,924,939	-				-1.2
2,924,939	-				+1.2
2,924,939	-				-0.5
2,924,939	-				-0.3
2,924,939	-				+1.3
2,924,949	+				-1.2
2,924,985	-				-1.4
2,925,004	+				-0.0
2,925,004	-				+1.5
2,925,012	-				-0.6
2,925,012	-				-1.5
2,925,020	+				+0.5
2,925,021	+				-0.1
2,925,029	-				+0.3
2,925,052	+		GFF2867	0.15	+0.8
2,925,064	+		GFF2867	0.18	-1.0
2,925,072	-		GFF2867	0.20	-1.5
2,925,072	-		GFF2867	0.20	+0.5
2,925,072	-		GFF2867	0.20	+1.5
2,925,082	-		GFF2867	0.22	+0.8
2,925,100	+		GFF2867	0.26	-0.4
2,925,108	-		GFF2867	0.28	-1.0
2,925,115	-		GFF2867	0.30	-1.6
2,925,128	-		GFF2867	0.33	+0.3
2,925,128	-		GFF2867	0.33	-1.3
2,925,131	-		GFF2867	0.34	+0.1
2,925,160	+		GFF2867	0.41	-0.4
2,925,160	+		GFF2867	0.41	+0.0
2,925,160	+		GFF2867	0.41	+0.8
2,925,160	+		GFF2867	0.41	+0.5
2,925,160	+		GFF2867	0.41	-0.0
2,925,160	+		GFF2867	0.41	+0.4
2,925,168	-		GFF2867	0.43	-2.2
2,925,168	-		GFF2867	0.43	+0.2
2,925,168	-		GFF2867	0.43	+1.0
2,925,168	-		GFF2867	0.43	-0.2
2,925,168	-		GFF2867	0.43	+0.2
2,925,168	-		GFF2867	0.43	-1.2
2,925,171	+		GFF2867	0.44	+0.6
2,925,185	+		GFF2867	0.47	+0.2
2,925,193	-		GFF2867	0.49	+0.6
2,925,193	-		GFF2867	0.49	-0.5
2,925,266	+		GFF2867	0.67	-1.0
2,925,266	+		GFF2867	0.67	+1.4
2,925,286	-		GFF2867	0.72	-0.1
2,925,286	-		GFF2867	0.72	+0.3
2,925,286	-		GFF2867	0.72	-0.2
2,925,298	+		GFF2867	0.75	+0.3
2,925,298	+		GFF2867	0.75	-2.4
2,925,311	+		GFF2867	0.79	-0.1
2,925,311	+		GFF2867	0.79	-0.8
2,925,311	+		GFF2867	0.79	+0.9
2,925,311	+		GFF2867	0.79	-0.4
2,925,314	-		GFF2867	0.79	-0.5
2,925,319	-		GFF2867	0.80	-0.2
2,925,319	-		GFF2867	0.80	+0.6
2,925,319	-		GFF2867	0.80	-0.2
2,925,341	-		GFF2867	0.86	-0.2
2,925,341	-		GFF2867	0.86	-2.0
2,925,395	+				-0.9
2,925,395	+				+0.7
2,925,403	-				-1.3
2,925,403	-				+0.8
2,925,403	-				-0.8
2,925,408	-				-0.4
2,925,429	-				+0.4
2,925,439	+				+0.2
2,925,444	+				-1.7
2,925,473	-				+0.6
2,925,479	+				+0.7
2,925,479	+				+1.2
2,925,479	+				-0.5
2,925,479	+				-0.9
2,925,479	+				+0.4
2,925,479	+				+0.7
2,925,479	+				+0.3
2,925,479	+				-0.1
2,925,487	-				-1.5
2,925,487	-				+0.6
2,925,487	-				-1.0
2,925,487	-				-1.1
2,925,487	-				+0.7
2,925,487	-				-0.7
2,925,487	-				-2.3
2,925,526	-				-0.3
2,925,540	-				+1.3
2,925,542	+				-0.0
2,925,574	+				-1.1
2,925,578	-				+0.5
2,925,583	+				-1.6
2,925,588	+		GFF2868	0.10	-0.4
2,925,588	+		GFF2868	0.10	-0.0
2,925,628	+		GFF2868	0.14	+0.2
2,925,631	-		GFF2868	0.15	+0.5
2,925,645	+		GFF2868	0.16	-0.9
2,925,658	-		GFF2868	0.17	+0.7
2,925,660	-		GFF2868	0.17	-2.1
2,925,663	-		GFF2868	0.18	+1.7
2,925,665	+		GFF2868	0.18	+0.4
2,925,673	-		GFF2868	0.19	+0.3
2,925,678	-		GFF2868	0.19	-0.5
2,925,711	-		GFF2868	0.22	-0.8
2,925,713	+		GFF2868	0.23	+0.2
2,925,713	+		GFF2868	0.23	-1.5
2,925,732	+		GFF2868	0.24	+0.3
2,925,760	-		GFF2868	0.27	-1.8
2,925,769	+		GFF2868	0.28	+1.0
2,925,769	+		GFF2868	0.28	-1.7
2,925,770	+		GFF2868	0.28	-0.6
2,925,774	+		GFF2868	0.29	+1.1
2,925,777	-		GFF2868	0.29	-0.9
2,925,777	-		GFF2868	0.29	-0.2
2,925,796	+		GFF2868	0.31	+1.1
2,925,796	+		GFF2868	0.31	-0.0
2,925,806	-		GFF2868	0.32	-0.0
2,925,859	-		GFF2868	0.37	-0.7
2,925,862	-		GFF2868	0.37	+0.9
2,925,870	+		GFF2868	0.38	+0.3
2,925,870	+		GFF2868	0.38	-0.0
2,925,870	+		GFF2868	0.38	-0.3
2,925,870	+		GFF2868	0.38	-1.3
2,925,870	+		GFF2868	0.38	-0.1
2,925,870	+		GFF2868	0.38	+0.7
2,925,870	+		GFF2868	0.38	+0.4
2,925,878	-		GFF2868	0.39	+2.6
2,925,878	-		GFF2868	0.39	-0.2
2,925,878	-		GFF2868	0.39	-0.6
2,925,893	-		GFF2868	0.40	+0.4
2,925,930	-		GFF2868	0.44	+0.7
2,925,932	-		GFF2868	0.44	-1.2
2,925,963	-		GFF2868	0.47	-2.7
2,925,973	-		GFF2868	0.48	-0.3
2,925,973	-		GFF2868	0.48	-1.3
2,925,977	+		GFF2868	0.48	-0.3
2,925,991	+		GFF2868	0.50	-1.3