Strain Fitness in Sphingobium sp. HT1-2 around GFF2865

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,922,064	+		GFF2862	0.90	-0.1
2,922,065	+		GFF2862	0.90	-2.1
2,922,077	+				-0.7
2,922,077	+				-0.2
2,922,077	+				+1.5
2,922,077	+				+0.9
2,922,077	+				+1.0
2,922,077	+				+0.4
2,922,077	+				-1.9
2,922,077	+				-0.2
2,922,077	+				-2.2
2,922,077	+				-1.2
2,922,077	+				-1.2
2,922,077	+				+0.2
2,922,077	+				-0.3
2,922,077	+				-1.4
2,922,077	+				-0.6
2,922,077	+				-0.3
2,922,077	+				-0.1
2,922,077	+				+1.2
2,922,077	+				-2.5
2,922,077	+				-0.1
2,922,077	+				-3.1
2,922,077	+				+0.8
2,922,077	+				-0.2
2,922,077	+				+0.6
2,922,077	+				+0.9
2,922,077	+				-1.2
2,922,077	+				-0.1
2,922,077	+				-0.4
2,922,077	+				+0.9
2,922,082	+				-0.5
2,922,082	+				-0.1
2,922,085	+				-1.8
2,922,085	-				-1.6
2,922,085	-				-0.0
2,922,085	-				-0.5
2,922,085	-				-2.6
2,922,085	-				+0.5
2,922,085	-				-0.4
2,922,085	-				+0.4
2,922,085	-				+0.0
2,922,085	-				-0.6
2,922,085	-				+0.9
2,922,085	-				+0.4
2,922,085	-				-0.2
2,922,085	-				-1.1
2,922,085	-				+0.1
2,922,085	-				+1.6
2,922,085	-				-0.3
2,922,085	-				+0.6
2,922,085	-				-0.1
2,922,085	-				+0.2
2,922,085	-				+0.0
2,922,085	-				-0.3
2,922,085	-				+0.4
2,922,085	-				-0.1
2,922,087	+				-0.0
2,922,087	+				+0.6
2,922,087	+				+1.3
2,922,087	+				-1.7
2,922,087	+				-0.5
2,922,087	+				+0.1
2,922,087	+				-0.8
2,922,095	-				-0.0
2,922,095	-				-0.3
2,922,095	-				-0.1
2,922,095	-				+0.1
2,922,095	-				+0.9
2,922,095	-				-0.2
2,922,095	-				-1.2
2,922,095	-				+0.1
2,922,095	-				-0.8
2,922,095	-				-0.8
2,922,095	-				+0.8
2,922,095	-				+0.3
2,922,096	+				+0.1
2,922,104	-				-0.2
2,922,114	+				-0.7
2,922,114	+				-1.0
2,922,114	+				+0.1
2,922,119	+				+1.0
2,922,119	+				+0.2
2,922,119	+				-1.2
2,922,119	+				+0.6
2,922,119	+				+0.1
2,922,119	+				+0.8
2,922,119	+				-2.9
2,922,119	+				+0.3
2,922,119	+				-2.1
2,922,119	+				-0.5
2,922,119	+				+0.2
2,922,119	+				-1.3
2,922,119	+				-0.5
2,922,119	+				-1.2
2,922,119	+				-0.6
2,922,119	+				+0.3
2,922,119	+				-1.0
2,922,119	+				+1.6
2,922,119	+				-1.5
2,922,119	+				-0.4
2,922,119	+				-0.4
2,922,119	+				+1.4
2,922,119	+				-1.3
2,922,122	-				-0.2
2,922,122	-				-1.9
2,922,122	-				+1.0
2,922,122	-				+0.2
2,922,124	+				-0.4
2,922,124	+				-0.2
2,922,124	+				+0.1
2,922,124	+				-0.8
2,922,124	+				+0.6
2,922,124	+				-0.8
2,922,124	+				+0.8
2,922,127	-				+0.4
2,922,127	-				+1.1
2,922,127	-				-0.9
2,922,127	-				-0.3
2,922,127	-				+0.8
2,922,127	-				-1.4
2,922,127	-				+0.1
2,922,127	-				+1.6
2,922,127	-				+0.4
2,922,127	-				+0.0
2,922,127	-				-0.8
2,922,127	-				+0.6
2,922,127	-				-0.5
2,922,127	-				-1.2
2,922,127	-				-0.7
2,922,127	-				+0.6
2,922,127	-				+0.4
2,922,127	-				+0.5
2,922,127	-				+0.0
2,922,127	-				-0.8
2,922,127	-				-0.8
2,922,129	+				+0.1
2,922,132	-				+0.6
2,922,132	-				-1.1
2,922,132	-				+0.1
2,922,132	-				-0.6
2,922,132	-				+0.2
2,922,132	-				+1.1
2,922,162	-				-0.7
2,922,188	+				+0.6
2,922,196	-				-0.9
2,922,203	+				-1.5
2,922,206	-				-0.6
2,922,222	+				-0.5
2,922,230	-				-0.9
2,922,230	-				+0.6
2,922,230	-				-1.4
2,922,230	-				+0.4
2,922,239	+				-0.4
2,922,249	+				-1.0
2,922,257	-				+1.4
2,922,264	+				+0.5
2,922,264	+				-0.7
2,922,264	+				-2.2
2,922,264	+				-0.7
2,922,264	-				+0.3
2,922,297	+				-0.1
2,922,300	-				+0.3
2,922,311	+				+0.7
2,922,323	+				+0.4
2,922,328	+				+0.1
2,922,331	-				-0.4
2,922,336	-				+0.5
2,922,336	-				-1.9
2,922,341	+				-1.0
2,922,362	+				+1.9
2,922,370	-				-1.7
2,922,370	-				-0.3
2,922,370	-				-1.3
2,922,372	+				-2.3
2,922,375	-				+0.0
2,922,382	+				-1.2
2,922,388	-				+0.1
2,922,390	-				-0.9
2,922,390	-				+1.2
2,922,413	-				-0.9
2,922,413	-				-1.8
2,922,423	-				+1.0
2,922,434	-				+0.9
2,922,434	-				+0.4
2,922,471	-				-2.5
2,922,471	-				-0.3
2,922,505	-		GFF2863	0.16	-0.3
2,922,505	-		GFF2863	0.16	-0.6
2,922,530	+		GFF2863	0.27	+0.4
2,922,531	-		GFF2863	0.28	+1.0
2,922,538	-		GFF2863	0.31	-0.9
2,922,558	+		GFF2863	0.39	+0.6
2,922,580	+		GFF2863	0.49	-1.6
2,922,601	+		GFF2863	0.58	-0.5
2,922,604	-		GFF2863	0.59	-0.2
2,922,604	-		GFF2863	0.59	+0.8
2,922,604	-		GFF2863	0.59	-0.0
2,922,609	-		GFF2863	0.61	+0.0
2,922,609	-		GFF2863	0.61	-1.3
2,922,622	-		GFF2863	0.67	+1.2
2,922,623	+		GFF2863	0.68	+0.1
2,922,623	+		GFF2863	0.68	-2.4
2,922,623	+		GFF2863	0.68	-0.7
2,922,623	+		GFF2863	0.68	+0.7
2,922,623	+		GFF2863	0.68	-1.7
2,922,623	+		GFF2863	0.68	-0.2
2,922,623	+		GFF2863	0.68	+1.4
2,922,623	+		GFF2863	0.68	-0.8
2,922,631	-		GFF2863	0.71	+0.7
2,922,631	-		GFF2863	0.71	-0.5
2,922,631	-		GFF2863	0.71	-0.8
2,922,631	-		GFF2863	0.71	-0.3
2,922,631	-		GFF2863	0.71	+0.2
2,922,631	-		GFF2863	0.71	+0.3
2,922,636	-		GFF2863	0.73	+0.4
2,922,653	-		GFF2863	0.81	-0.6
2,922,669	+		GFF2863	0.87	+0.6
2,922,669	+		GFF2863	0.87	-0.9
2,922,677	-				+1.0
2,922,677	-				-0.9
2,922,678	+				-0.4
2,922,699	-				+1.0
2,922,699	-				-2.3
2,922,725	+		GFF2864	0.17	+0.4
2,922,809	-		GFF2864	0.54	+0.9
2,922,810	+		GFF2864	0.54	-0.6
2,922,810	-		GFF2864	0.54	-1.1
2,922,823	+		GFF2864	0.60	-1.5
2,922,833	+		GFF2864	0.64	-0.3
2,922,870	+		GFF2864	0.80	-0.3
2,922,878	-		GFF2864	0.84	-1.7
2,922,880	+		GFF2864	0.85	+0.3
2,922,880	+		GFF2864	0.85	+0.6
2,922,880	+		GFF2864	0.85	-0.7
2,922,888	-		GFF2864	0.88	-1.7
2,922,888	-		GFF2864	0.88	+0.2
2,922,888	-		GFF2864	0.88	+0.0
2,922,915	+				+0.3
2,922,915	+				+0.4
2,922,915	+				-1.4
2,922,915	+				-1.2
2,922,915	+				+0.2
2,922,915	+				+0.4
2,922,915	+				+0.5
2,922,915	+				+0.6
2,922,915	+				+1.1
2,922,915	+				-1.3
2,922,915	+				-1.6
2,922,915	+				-1.7
2,922,915	+				+1.5
2,922,915	+				+0.4
2,922,915	+				+1.0
2,922,915	+				-0.0
2,922,915	+				-0.3
2,922,917	-				+0.2
2,922,923	-				+0.8
2,922,923	-				-2.2
2,922,923	-				-0.8
2,922,923	-				+0.2
2,922,923	-				+0.8
2,922,923	-				-0.2
2,922,923	-				+0.3
2,922,923	-				-0.3
2,922,923	-				-0.5
2,922,923	-				+1.4
2,922,923	-				-0.1
2,922,923	-				-1.1
2,922,923	-				-0.1
2,922,923	-				-0.6
2,922,930	+				-0.7
2,922,946	-				-0.1
2,922,948	+				-0.3
2,922,948	+				-2.6
2,922,948	+				-0.6
2,922,948	+				-1.3
2,922,956	-				-0.3
2,922,956	-				+0.7
2,922,956	-				+1.3
2,922,965	+				-0.1
2,922,965	+				-0.4
2,922,965	+				+1.4
2,922,965	+				-2.5
2,922,966	+				+0.3
2,922,966	+				-0.0
2,922,973	-				+0.2
2,922,974	-				-0.4
2,922,998	-				+0.1
2,923,004	+				+0.0
2,923,008	-				-0.5
2,923,027	+				+0.4
2,923,027	-				+0.5
2,923,037	-				-0.2
2,923,058	-				-1.3
2,923,089	+				+0.8
2,923,089	+				+0.5
2,923,097	-				+0.5
2,923,097	-				+0.4
2,923,111	+				-0.9
2,923,116	+				+0.6
2,923,118	+				+1.1
2,923,118	+				-0.0
2,923,128	+				+0.3
2,923,155	+		GFF2865	0.12	+0.5
2,923,176	+		GFF2865	0.14	+1.3
2,923,197	-		GFF2865	0.16	+0.6
2,923,199	+		GFF2865	0.16	-0.4
2,923,208	+		GFF2865	0.17	+0.2
2,923,244	+		GFF2865	0.21	-1.3
2,923,252	-		GFF2865	0.22	+0.5
2,923,252	-		GFF2865	0.22	-1.3
2,923,254	-		GFF2865	0.22	-2.3
2,923,282	+		GFF2865	0.25	+0.4
2,923,289	-		GFF2865	0.26	-0.2
2,923,290	-		GFF2865	0.26	-0.5
2,923,290	-		GFF2865	0.26	+0.6
2,923,320	+		GFF2865	0.29	-1.3
2,923,328	-		GFF2865	0.30	+0.8
2,923,329	-		GFF2865	0.30	-0.7
2,923,335	+		GFF2865	0.31	-0.5
2,923,342	+		GFF2865	0.32	+0.2
2,923,342	+		GFF2865	0.32	+0.7
2,923,342	+		GFF2865	0.32	-0.8
2,923,350	-		GFF2865	0.32	+0.3
2,923,352	+		GFF2865	0.33	-0.9
2,923,369	+		GFF2865	0.35	-2.8
2,923,369	-		GFF2865	0.35	-0.2
2,923,370	-		GFF2865	0.35	-0.7
2,923,370	-		GFF2865	0.35	-1.0
2,923,374	+		GFF2865	0.35	-2.4
2,923,379	+		GFF2865	0.36	+0.3
2,923,379	+		GFF2865	0.36	+0.7
2,923,382	-		GFF2865	0.36	-0.9
2,923,382	-		GFF2865	0.36	-0.6
2,923,387	-		GFF2865	0.36	+0.4
2,923,387	-		GFF2865	0.36	-1.1
2,923,423	+		GFF2865	0.40	+0.2
2,923,445	+		GFF2865	0.43	-0.3
2,923,453	-		GFF2865	0.43	-1.7
2,923,453	-		GFF2865	0.43	-2.1
2,923,453	-		GFF2865	0.43	+0.6
2,923,453	-		GFF2865	0.43	+1.1
2,923,475	+		GFF2865	0.46	-0.6
2,923,486	+		GFF2865	0.47	-0.0
2,923,486	+		GFF2865	0.47	+0.3
2,923,486	+		GFF2865	0.47	-0.5
2,923,486	+		GFF2865	0.47	-0.2
2,923,486	+		GFF2865	0.47	-0.6
2,923,486	-		GFF2865	0.47	-0.6
2,923,494	-		GFF2865	0.48	-1.3
2,923,494	-		GFF2865	0.48	-1.9
2,923,494	-		GFF2865	0.48	+1.1
2,923,494	-		GFF2865	0.48	-0.3
2,923,494	-		GFF2865	0.48	-0.9
2,923,494	-		GFF2865	0.48	+0.4
2,923,497	-		GFF2865	0.48	-0.2
2,923,504	+		GFF2865	0.49	-0.5
2,923,504	+		GFF2865	0.49	+0.8
2,923,511	-		GFF2865	0.50	+0.5
2,923,518	-		GFF2865	0.50	-0.5
2,923,550	-		GFF2865	0.54	+0.4
2,923,587	+		GFF2865	0.58	-0.1
2,923,587	+		GFF2865	0.58	-0.4
2,923,587	+		GFF2865	0.58	-0.2
2,923,595	-		GFF2865	0.58	-0.0
2,923,610	+		GFF2865	0.60	+0.0
2,923,617	-		GFF2865	0.61	+0.0
2,923,623	+		GFF2865	0.61	+0.7
2,923,630	-		GFF2865	0.62	-0.4
2,923,636	+		GFF2865	0.63	+0.8
2,923,641	-		GFF2865	0.63	+0.2
2,923,653	-		GFF2865	0.65	-0.4
2,923,661	+		GFF2865	0.65	+0.2
2,923,677	-		GFF2865	0.67	+0.3
2,923,687	+		GFF2865	0.68	-0.6
2,923,695	-		GFF2865	0.69	-2.0
2,923,700	-		GFF2865	0.70	-0.1
2,923,741	-		GFF2865	0.74	+0.3
2,923,754	+		GFF2865	0.75	+0.2
2,923,764	+		GFF2865	0.76	-0.1
2,923,773	-		GFF2865	0.77	+0.6
2,923,774	+		GFF2865	0.77	-0.9
2,923,774	+		GFF2865	0.77	-0.7
2,923,782	-		GFF2865	0.78	+0.6
2,923,783	-		GFF2865	0.78	+0.5
2,923,826	+		GFF2865	0.83	+0.6
2,923,828	-		GFF2865	0.83	+0.1
2,923,828	-		GFF2865	0.83	+0.2
2,923,834	-		GFF2865	0.84	+0.6
2,923,877	+		GFF2865	0.88	+0.1
2,923,883	+		GFF2865	0.89	-0.9
2,923,901	+				-1.3
2,923,901	+				-1.0
2,923,963	+				-0.5
2,923,976	-				-2.3
2,923,981	-				+0.6
2,923,981	-				-1.4
2,923,981	-				+0.8
2,923,999	+				+1.9
2,924,013	+				+1.2
2,924,013	+				+0.2
2,924,021	-				-1.2
2,924,023	+				-0.8
2,924,023	+				-0.4
2,924,023	+				+0.4
2,924,023	+				-1.4
2,924,023	+				-0.3
2,924,025	+				+1.6
2,924,031	-				-0.8
2,924,031	-				-0.0
2,924,031	-				+1.0
2,924,031	-				-0.3
2,924,040	-				-0.5
2,924,046	+				-1.3
2,924,048	+				+0.8
2,924,048	+				-0.7
2,924,048	+				-0.0
2,924,048	+				-0.1
2,924,048	+				-1.0
2,924,048	+				-0.5
2,924,048	+				-0.9
2,924,048	+				-0.8
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2,924,939	-				-0.3
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2,924,949	+				-1.2
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