Strain Fitness in Sphingobium sp. HT1-2 around GFF2863

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,921,490	+		GFF2862	0.72	-2.5
2,921,494	+		GFF2862	0.73	+1.8
2,921,498	-		GFF2862	0.73	+1.6
2,921,526	+		GFF2862	0.74	-1.2
2,921,534	-		GFF2862	0.74	+0.5
2,921,534	-		GFF2862	0.74	+1.0
2,921,534	-		GFF2862	0.74	+0.2
2,921,534	-		GFF2862	0.74	+0.0
2,921,537	-		GFF2862	0.74	+1.2
2,921,553	+		GFF2862	0.74	-1.3
2,921,553	+		GFF2862	0.74	-0.4
2,921,553	+		GFF2862	0.74	-0.9
2,921,553	+		GFF2862	0.74	+0.2
2,921,559	+		GFF2862	0.75	-1.6
2,921,561	-		GFF2862	0.75	-0.2
2,921,561	-		GFF2862	0.75	-0.3
2,921,561	-		GFF2862	0.75	+0.4
2,921,562	-		GFF2862	0.75	-0.8
2,921,568	-		GFF2862	0.75	-0.5
2,921,568	-		GFF2862	0.75	+0.9
2,921,575	+		GFF2862	0.75	-2.1
2,921,585	-		GFF2862	0.75	-1.4
2,921,653	-		GFF2862	0.77	-0.7
2,921,661	+		GFF2862	0.78	-0.2
2,921,663	+		GFF2862	0.78	+1.1
2,921,667	+		GFF2862	0.78	+0.4
2,921,671	-		GFF2862	0.78	+0.6
2,921,673	+		GFF2862	0.78	-0.4
2,921,776	+		GFF2862	0.81	-0.2
2,921,784	-		GFF2862	0.81	+1.1
2,921,799	+		GFF2862	0.82	-1.9
2,921,809	+		GFF2862	0.82	-0.4
2,921,825	+		GFF2862	0.83	-1.2
2,921,861	+		GFF2862	0.84	-0.2
2,921,868	-		GFF2862	0.84	-2.2
2,921,869	-		GFF2862	0.84	-1.5
2,921,879	+		GFF2862	0.84	+0.6
2,921,879	+		GFF2862	0.84	+1.1
2,921,887	-		GFF2862	0.84	-2.0
2,921,946	+		GFF2862	0.86	+0.6
2,921,946	+		GFF2862	0.86	-0.5
2,921,946	+		GFF2862	0.86	-0.7
2,921,946	+		GFF2862	0.86	-0.7
2,921,946	+		GFF2862	0.86	-2.0
2,921,946	+		GFF2862	0.86	-1.8
2,921,946	+		GFF2862	0.86	+0.3
2,921,946	+		GFF2862	0.86	+0.3
2,921,946	+		GFF2862	0.86	+0.0
2,921,946	+		GFF2862	0.86	-0.8
2,921,946	+		GFF2862	0.86	-1.3
2,921,946	+		GFF2862	0.86	+0.3
2,921,946	+		GFF2862	0.86	+0.5
2,921,946	+		GFF2862	0.86	-0.3
2,921,946	+		GFF2862	0.86	-1.2
2,921,946	+		GFF2862	0.86	+1.3
2,921,946	+		GFF2862	0.86	+0.3
2,921,946	+		GFF2862	0.86	+0.1
2,921,946	+		GFF2862	0.86	-2.1
2,921,946	+		GFF2862	0.86	-1.3
2,921,946	+		GFF2862	0.86	-0.0
2,921,946	+		GFF2862	0.86	-0.9
2,921,946	+		GFF2862	0.86	-1.7
2,921,946	+		GFF2862	0.86	-0.1
2,921,946	+		GFF2862	0.86	-1.4
2,921,946	+		GFF2862	0.86	+0.8
2,921,946	+		GFF2862	0.86	+1.5
2,921,948	-		GFF2862	0.86	-2.4
2,921,954	-		GFF2862	0.86	-0.8
2,921,954	-		GFF2862	0.86	+1.3
2,921,954	-		GFF2862	0.86	+1.5
2,921,954	-		GFF2862	0.86	+0.6
2,921,954	-		GFF2862	0.86	+1.0
2,921,954	-		GFF2862	0.86	+0.3
2,921,954	-		GFF2862	0.86	+0.1
2,921,954	-		GFF2862	0.86	-0.3
2,921,954	-		GFF2862	0.86	+0.4
2,921,954	-		GFF2862	0.86	-0.7
2,921,954	-		GFF2862	0.86	-1.4
2,921,954	-		GFF2862	0.86	-2.5
2,921,954	-		GFF2862	0.86	-0.8
2,921,954	-		GFF2862	0.86	-0.2
2,921,954	-		GFF2862	0.86	-1.3
2,921,954	-		GFF2862	0.86	+1.0
2,921,954	-		GFF2862	0.86	-0.0
2,921,954	-		GFF2862	0.86	-0.4
2,921,954	-		GFF2862	0.86	-1.1
2,921,954	-		GFF2862	0.86	+0.1
2,921,954	-		GFF2862	0.86	+0.4
2,921,954	-		GFF2862	0.86	+1.0
2,921,954	-		GFF2862	0.86	-1.7
2,921,954	-		GFF2862	0.86	-0.5
2,921,954	-		GFF2862	0.86	+0.3
2,921,954	-		GFF2862	0.86	-0.3
2,921,954	-		GFF2862	0.86	-0.1
2,921,954	-		GFF2862	0.86	-1.0
2,921,954	-		GFF2862	0.86	+0.4
2,921,954	-		GFF2862	0.86	+0.4
2,921,954	-		GFF2862	0.86	-1.7
2,921,954	-		GFF2862	0.86	+0.9
2,921,954	-		GFF2862	0.86	+0.3
2,921,954	-		GFF2862	0.86	-0.6
2,921,954	-		GFF2862	0.86	+0.0
2,921,954	-		GFF2862	0.86	-1.2
2,921,954	-		GFF2862	0.86	-0.6
2,921,954	-		GFF2862	0.86	-1.6
2,921,954	-		GFF2862	0.86	-1.7
2,921,954	-		GFF2862	0.86	-0.5
2,921,954	-		GFF2862	0.86	-0.6
2,921,954	-		GFF2862	0.86	+0.1
2,921,954	-		GFF2862	0.86	+1.4
2,921,959	-		GFF2862	0.87	+1.0
2,921,969	-		GFF2862	0.87	+0.1
2,921,971	+		GFF2862	0.87	-2.0
2,922,024	+		GFF2862	0.89	-0.8
2,922,024	+		GFF2862	0.89	+0.1
2,922,024	+		GFF2862	0.89	+0.7
2,922,032	+		GFF2862	0.89	-0.3
2,922,040	-		GFF2862	0.89	+0.6
2,922,064	+		GFF2862	0.90	-0.1
2,922,065	+		GFF2862	0.90	-2.1
2,922,077	+				-0.7
2,922,077	+				-0.2
2,922,077	+				+1.5
2,922,077	+				+0.9
2,922,077	+				+1.0
2,922,077	+				+0.4
2,922,077	+				-1.9
2,922,077	+				-0.2
2,922,077	+				-2.2
2,922,077	+				-1.2
2,922,077	+				-1.2
2,922,077	+				+0.2
2,922,077	+				-0.3
2,922,077	+				-1.4
2,922,077	+				-0.6
2,922,077	+				-0.3
2,922,077	+				-0.1
2,922,077	+				+1.2
2,922,077	+				-2.5
2,922,077	+				-0.1
2,922,077	+				-3.1
2,922,077	+				+0.8
2,922,077	+				-0.2
2,922,077	+				+0.6
2,922,077	+				+0.9
2,922,077	+				-1.2
2,922,077	+				-0.1
2,922,077	+				-0.4
2,922,077	+				+0.9
2,922,082	+				-0.5
2,922,082	+				-0.1
2,922,085	+				-1.8
2,922,085	-				-1.6
2,922,085	-				-0.0
2,922,085	-				-0.5
2,922,085	-				-2.6
2,922,085	-				+0.5
2,922,085	-				-0.4
2,922,085	-				+0.4
2,922,085	-				+0.0
2,922,085	-				-0.6
2,922,085	-				+0.9
2,922,085	-				+0.4
2,922,085	-				-0.2
2,922,085	-				-1.1
2,922,085	-				+0.1
2,922,085	-				+1.6
2,922,085	-				-0.3
2,922,085	-				+0.6
2,922,085	-				-0.1
2,922,085	-				+0.2
2,922,085	-				+0.0
2,922,085	-				-0.3
2,922,085	-				+0.4
2,922,085	-				-0.1
2,922,087	+				-0.0
2,922,087	+				+0.6
2,922,087	+				+1.3
2,922,087	+				-1.7
2,922,087	+				-0.5
2,922,087	+				+0.1
2,922,087	+				-0.8
2,922,095	-				-0.0
2,922,095	-				-0.3
2,922,095	-				-0.1
2,922,095	-				+0.1
2,922,095	-				+0.9
2,922,095	-				-0.2
2,922,095	-				-1.2
2,922,095	-				+0.1
2,922,095	-				-0.8
2,922,095	-				-0.8
2,922,095	-				+0.8
2,922,095	-				+0.3
2,922,096	+				+0.1
2,922,104	-				-0.2
2,922,114	+				-0.7
2,922,114	+				-1.0
2,922,114	+				+0.1
2,922,119	+				+1.0
2,922,119	+				+0.2
2,922,119	+				-1.2
2,922,119	+				+0.6
2,922,119	+				+0.1
2,922,119	+				+0.8
2,922,119	+				-2.9
2,922,119	+				+0.3
2,922,119	+				-2.1
2,922,119	+				-0.5
2,922,119	+				+0.2
2,922,119	+				-1.3
2,922,119	+				-0.5
2,922,119	+				-1.2
2,922,119	+				-0.6
2,922,119	+				+0.3
2,922,119	+				-1.0
2,922,119	+				+1.6
2,922,119	+				-1.5
2,922,119	+				-0.4
2,922,119	+				-0.4
2,922,119	+				+1.4
2,922,119	+				-1.3
2,922,122	-				-0.2
2,922,122	-				-1.9
2,922,122	-				+1.0
2,922,122	-				+0.2
2,922,124	+				-0.4
2,922,124	+				-0.2
2,922,124	+				+0.1
2,922,124	+				-0.8
2,922,124	+				+0.6
2,922,124	+				-0.8
2,922,124	+				+0.8
2,922,127	-				+0.4
2,922,127	-				+1.1
2,922,127	-				-0.9
2,922,127	-				-0.3
2,922,127	-				+0.8
2,922,127	-				-1.4
2,922,127	-				+0.1
2,922,127	-				+1.6
2,922,127	-				+0.4
2,922,127	-				+0.0
2,922,127	-				-0.8
2,922,127	-				+0.6
2,922,127	-				-0.5
2,922,127	-				-1.2
2,922,127	-				-0.7
2,922,127	-				+0.6
2,922,127	-				+0.4
2,922,127	-				+0.5
2,922,127	-				+0.0
2,922,127	-				-0.8
2,922,127	-				-0.8
2,922,129	+				+0.1
2,922,132	-				+0.6
2,922,132	-				-1.1
2,922,132	-				+0.1
2,922,132	-				-0.6
2,922,132	-				+0.2
2,922,132	-				+1.1
2,922,162	-				-0.7
2,922,188	+				+0.6
2,922,196	-				-0.9
2,922,203	+				-1.5
2,922,206	-				-0.6
2,922,222	+				-0.5
2,922,230	-				-0.9
2,922,230	-				+0.6
2,922,230	-				-1.4
2,922,230	-				+0.4
2,922,239	+				-0.4
2,922,249	+				-1.0
2,922,257	-				+1.4
2,922,264	+				+0.5
2,922,264	+				-0.7
2,922,264	+				-2.2
2,922,264	+				-0.7
2,922,264	-				+0.3
2,922,297	+				-0.1
2,922,300	-				+0.3
2,922,311	+				+0.7
2,922,323	+				+0.4
2,922,328	+				+0.1
2,922,331	-				-0.4
2,922,336	-				+0.5
2,922,336	-				-1.9
2,922,341	+				-1.0
2,922,362	+				+1.9
2,922,370	-				-1.7
2,922,370	-				-0.3
2,922,370	-				-1.3
2,922,372	+				-2.3
2,922,375	-				+0.0
2,922,382	+				-1.2
2,922,388	-				+0.1
2,922,390	-				-0.9
2,922,390	-				+1.2
2,922,413	-				-0.9
2,922,413	-				-1.8
2,922,423	-				+1.0
2,922,434	-				+0.9
2,922,434	-				+0.4
2,922,471	-				-2.5
2,922,471	-				-0.3
2,922,505	-		GFF2863	0.16	-0.3
2,922,505	-		GFF2863	0.16	-0.6
2,922,530	+		GFF2863	0.27	+0.4
2,922,531	-		GFF2863	0.28	+1.0
2,922,538	-		GFF2863	0.31	-0.9
2,922,558	+		GFF2863	0.39	+0.6
2,922,580	+		GFF2863	0.49	-1.6
2,922,601	+		GFF2863	0.58	-0.5
2,922,604	-		GFF2863	0.59	-0.2
2,922,604	-		GFF2863	0.59	+0.8
2,922,604	-		GFF2863	0.59	-0.0
2,922,609	-		GFF2863	0.61	+0.0
2,922,609	-		GFF2863	0.61	-1.3
2,922,622	-		GFF2863	0.67	+1.2
2,922,623	+		GFF2863	0.68	+0.1
2,922,623	+		GFF2863	0.68	-2.4
2,922,623	+		GFF2863	0.68	-0.7
2,922,623	+		GFF2863	0.68	+0.7
2,922,623	+		GFF2863	0.68	-1.7
2,922,623	+		GFF2863	0.68	-0.2
2,922,623	+		GFF2863	0.68	+1.4
2,922,623	+		GFF2863	0.68	-0.8
2,922,631	-		GFF2863	0.71	+0.7
2,922,631	-		GFF2863	0.71	-0.5
2,922,631	-		GFF2863	0.71	-0.8
2,922,631	-		GFF2863	0.71	-0.3
2,922,631	-		GFF2863	0.71	+0.2
2,922,631	-		GFF2863	0.71	+0.3
2,922,636	-		GFF2863	0.73	+0.4
2,922,653	-		GFF2863	0.81	-0.6
2,922,669	+		GFF2863	0.87	+0.6
2,922,669	+		GFF2863	0.87	-0.9
2,922,677	-				+1.0
2,922,677	-				-0.9
2,922,678	+				-0.4
2,922,699	-				+1.0
2,922,699	-				-2.3
2,922,725	+		GFF2864	0.17	+0.4
2,922,809	-		GFF2864	0.54	+0.9
2,922,810	+		GFF2864	0.54	-0.6
2,922,810	-		GFF2864	0.54	-1.1
2,922,823	+		GFF2864	0.60	-1.5
2,922,833	+		GFF2864	0.64	-0.3
2,922,870	+		GFF2864	0.80	-0.3
2,922,878	-		GFF2864	0.84	-1.7
2,922,880	+		GFF2864	0.85	+0.3
2,922,880	+		GFF2864	0.85	+0.6
2,922,880	+		GFF2864	0.85	-0.7
2,922,888	-		GFF2864	0.88	-1.7
2,922,888	-		GFF2864	0.88	+0.2
2,922,888	-		GFF2864	0.88	+0.0
2,922,915	+				+0.3
2,922,915	+				+0.4
2,922,915	+				-1.4
2,922,915	+				-1.2
2,922,915	+				+0.2
2,922,915	+				+0.4
2,922,915	+				+0.5
2,922,915	+				+0.6
2,922,915	+				+1.1
2,922,915	+				-1.3
2,922,915	+				-1.6
2,922,915	+				-1.7
2,922,915	+				+1.5
2,922,915	+				+0.4
2,922,915	+				+1.0
2,922,915	+				-0.0
2,922,915	+				-0.3
2,922,917	-				+0.2
2,922,923	-				+0.8
2,922,923	-				-2.2
2,922,923	-				-0.8
2,922,923	-				+0.2
2,922,923	-				+0.8
2,922,923	-				-0.2
2,922,923	-				+0.3
2,922,923	-				-0.3
2,922,923	-				-0.5
2,922,923	-				+1.4
2,922,923	-				-0.1
2,922,923	-				-1.1
2,922,923	-				-0.1
2,922,923	-				-0.6
2,922,930	+				-0.7
2,922,946	-				-0.1
2,922,948	+				-0.3
2,922,948	+				-2.6
2,922,948	+				-0.6
2,922,948	+				-1.3
2,922,956	-				-0.3
2,922,956	-				+0.7
2,922,956	-				+1.3
2,922,965	+				-0.1
2,922,965	+				-0.4
2,922,965	+				+1.4
2,922,965	+				-2.5
2,922,966	+				+0.3
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