Strain Fitness in Sphingobium sp. HT1-2 around GFF2772

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,803,555	+		GFF2770	0.37	-0.7
2,803,565	+		GFF2770	0.39	-1.9
2,803,565	+		GFF2770	0.39	+0.6
2,803,565	+		GFF2770	0.39	-0.7
2,803,565	+		GFF2770	0.39	+0.2
2,803,565	+		GFF2770	0.39	-0.5
2,803,573	-		GFF2770	0.40	-1.4
2,803,573	-		GFF2770	0.40	-0.8
2,803,582	+		GFF2770	0.42	-0.8
2,803,584	-		GFF2770	0.43	-1.0
2,803,601	+		GFF2770	0.46	-0.1
2,803,602	+		GFF2770	0.46	+0.2
2,803,610	-		GFF2770	0.47	+0.6
2,803,637	-		GFF2770	0.52	-0.7
2,803,637	-		GFF2770	0.52	+0.4
2,803,652	+		GFF2770	0.55	+0.5
2,803,652	+		GFF2770	0.55	-0.2
2,803,652	+		GFF2770	0.55	-2.6
2,803,652	+		GFF2770	0.55	-1.2
2,803,652	+		GFF2770	0.55	+0.3
2,803,660	-		GFF2770	0.57	+0.6
2,803,676	+		GFF2770	0.60	-0.4
2,803,676	+		GFF2770	0.60	+0.7
2,803,676	+		GFF2770	0.60	+0.2
2,803,676	-		GFF2770	0.60	+0.1
2,803,684	-		GFF2770	0.61	+0.1
2,803,694	-		GFF2770	0.63	-0.4
2,803,703	+		GFF2770	0.65	-0.2
2,803,708	-		GFF2770	0.66	-0.6
2,803,738	-		GFF2770	0.71	-0.4
2,803,760	+		GFF2770	0.75	-0.7
2,803,785	-		GFF2770	0.80	-1.7
2,803,785	-		GFF2770	0.80	-0.6
2,803,785	-		GFF2770	0.80	-0.1
2,803,785	-		GFF2770	0.80	-2.2
2,803,785	-		GFF2770	0.80	-0.1
2,803,785	-		GFF2770	0.80	+0.9
2,803,785	-		GFF2770	0.80	-0.4
2,803,785	-		GFF2770	0.80	+0.2
2,803,785	-		GFF2770	0.80	-1.4
2,803,813	+		GFF2770	0.85	-0.4
2,803,813	+		GFF2770	0.85	+0.1
2,803,818	+		GFF2770	0.86	+0.8
2,803,818	+		GFF2770	0.86	+0.7
2,803,818	+		GFF2770	0.86	-0.5
2,803,818	+		GFF2770	0.86	+0.6
2,803,818	+		GFF2770	0.86	-0.1
2,803,826	-		GFF2770	0.88	-2.0
2,803,834	-		GFF2770	0.89	-0.8
2,803,836	+		GFF2770	0.90	-0.1
2,803,841	+				-0.2
2,803,841	+				+0.2
2,803,844	-				-2.0
2,803,844	-				-2.0
2,803,849	-				-1.5
2,803,886	+				-1.1
2,803,893	+				+0.1
2,803,893	+				-1.4
2,803,898	+				-1.5
2,803,898	+				-2.5
2,803,903	-				-0.4
2,803,903	-				-0.2
2,803,906	-				-1.5
2,803,906	-				-1.8
2,803,906	-				+0.3
2,803,906	-				-0.2
2,803,913	-				+0.1
2,803,914	+				+1.1
2,803,919	+				-2.0
2,803,925	+				-0.3
2,803,930	+				-0.3
2,803,956	+				-1.4
2,803,956	+				-0.6
2,803,956	+				+0.8
2,803,966	+		GFF2771	0.11	-0.5
2,803,966	+		GFF2771	0.11	+0.4
2,803,974	-		GFF2771	0.13	-1.0
2,803,981	+		GFF2771	0.14	-1.2
2,803,984	+		GFF2771	0.14	+0.6
2,804,017	-		GFF2771	0.20	-0.4
2,804,045	+		GFF2771	0.24	-0.2
2,804,048	-		GFF2771	0.25	-0.4
2,804,063	+		GFF2771	0.27	+0.5
2,804,120	-		GFF2771	0.37	+0.0
2,804,120	-		GFF2771	0.37	-1.1
2,804,120	-		GFF2771	0.37	-0.1
2,804,124	+		GFF2771	0.37	+0.3
2,804,222	+		GFF2771	0.54	-0.2
2,804,230	-		GFF2771	0.55	-2.1
2,804,230	-		GFF2771	0.55	-0.3
2,804,230	-		GFF2771	0.55	+0.3
2,804,278	+		GFF2771	0.63	+0.1
2,804,283	+		GFF2771	0.64	-2.0
2,804,286	-		GFF2771	0.64	-0.5
2,804,286	-		GFF2771	0.64	-1.6
2,804,290	+		GFF2771	0.65	-1.6
2,804,291	-		GFF2771	0.65	-0.4
2,804,291	-		GFF2771	0.65	+0.1
2,804,291	-		GFF2771	0.65	-0.3
2,804,291	-		GFF2771	0.65	-0.6
2,804,291	-		GFF2771	0.65	-1.8
2,804,291	-		GFF2771	0.65	+1.2
2,804,291	-		GFF2771	0.65	+0.5
2,804,291	-		GFF2771	0.65	-2.2
2,804,293	-		GFF2771	0.66	-1.6
2,804,298	-		GFF2771	0.66	-0.4
2,804,298	-		GFF2771	0.66	+0.1
2,804,299	-		GFF2771	0.67	-0.8
2,804,299	-		GFF2771	0.67	+0.7
2,804,318	-		GFF2771	0.70	-0.3
2,804,318	-		GFF2771	0.70	-0.8
2,804,321	+		GFF2771	0.70	-1.4
2,804,321	+		GFF2771	0.70	+0.9
2,804,326	+		GFF2771	0.71	-0.4
2,804,326	+		GFF2771	0.71	+0.2
2,804,326	+		GFF2771	0.71	+0.4
2,804,326	+		GFF2771	0.71	-0.7
2,804,329	-		GFF2771	0.71	-1.6
2,804,329	-		GFF2771	0.71	+0.2
2,804,334	-		GFF2771	0.72	-0.3
2,804,334	-		GFF2771	0.72	-0.6
2,804,334	-		GFF2771	0.72	+0.4
2,804,334	-		GFF2771	0.72	+0.4
2,804,334	-		GFF2771	0.72	+0.2
2,804,334	-		GFF2771	0.72	+0.4
2,804,334	-		GFF2771	0.72	-0.7
2,804,334	-		GFF2771	0.72	+1.0
2,804,334	-		GFF2771	0.72	-1.0
2,804,334	-		GFF2771	0.72	-0.1
2,804,342	+		GFF2771	0.74	-0.2
2,804,342	+		GFF2771	0.74	+0.0
2,804,342	+		GFF2771	0.74	+1.9
2,804,342	+		GFF2771	0.74	-1.3
2,804,347	+		GFF2771	0.74	+0.7
2,804,347	+		GFF2771	0.74	+1.0
2,804,347	+		GFF2771	0.74	-0.3
2,804,347	+		GFF2771	0.74	-0.7
2,804,355	-		GFF2771	0.76	+0.4
2,804,355	-		GFF2771	0.76	-1.2
2,804,355	-		GFF2771	0.76	+0.7
2,804,355	-		GFF2771	0.76	-0.5
2,804,355	-		GFF2771	0.76	-1.9
2,804,357	+		GFF2771	0.76	+0.2
2,804,357	+		GFF2771	0.76	-0.6
2,804,357	+		GFF2771	0.76	+0.1
2,804,357	+		GFF2771	0.76	-0.4
2,804,376	+		GFF2771	0.79	+1.2
2,804,376	+		GFF2771	0.79	-1.2
2,804,376	+		GFF2771	0.79	-0.4
2,804,381	+		GFF2771	0.80	+1.0
2,804,384	-		GFF2771	0.81	-0.6
2,804,384	-		GFF2771	0.81	+0.3
2,804,384	-		GFF2771	0.81	-0.2
2,804,386	+		GFF2771	0.81	-1.5
2,804,386	+		GFF2771	0.81	-1.1
2,804,386	+		GFF2771	0.81	-0.4
2,804,386	+		GFF2771	0.81	+0.6
2,804,386	+		GFF2771	0.81	+0.4
2,804,389	-		GFF2771	0.81	-1.5
2,804,394	-		GFF2771	0.82	+0.5
2,804,394	-		GFF2771	0.82	-0.1
2,804,394	-		GFF2771	0.82	-0.0
2,804,399	+		GFF2771	0.83	+0.2
2,804,401	-		GFF2771	0.83	-0.8
2,804,404	-		GFF2771	0.84	-1.2
2,804,406	-		GFF2771	0.84	+0.5
2,804,459	+				-0.3
2,804,464	+				+0.3
2,804,464	+				-0.7
2,804,464	+				+1.0
2,804,467	-				+0.7
2,804,467	-				-0.6
2,804,467	-				-1.4
2,804,467	-				+0.0
2,804,467	-				-1.9
2,804,472	-				-1.5
2,804,472	-				-1.0
2,804,472	-				-0.1
2,804,472	-				+0.8
2,804,488	-				+0.4
2,804,613	+		GFF2772	0.16	-0.7
2,804,621	-		GFF2772	0.17	+0.0
2,804,652	+		GFF2772	0.23	-0.6
2,804,658	+		GFF2772	0.24	+0.1
2,804,676	+		GFF2772	0.27	-2.0
2,804,684	-		GFF2772	0.29	+0.2
2,804,690	-		GFF2772	0.30	-0.8
2,804,700	+		GFF2772	0.32	+1.4
2,804,708	-		GFF2772	0.33	+0.2
2,804,711	+		GFF2772	0.34	+0.2
2,804,719	-		GFF2772	0.35	-1.4
2,804,719	-		GFF2772	0.35	-1.8
2,804,725	+		GFF2772	0.36	-1.6
2,804,725	+		GFF2772	0.36	+0.2
2,804,725	+		GFF2772	0.36	-1.4
2,804,725	+		GFF2772	0.36	-1.3
2,804,730	+		GFF2772	0.37	-1.4
2,804,730	+		GFF2772	0.37	+0.4
2,804,730	+		GFF2772	0.37	-0.5
2,804,730	+		GFF2772	0.37	+0.7
2,804,730	+		GFF2772	0.37	-0.7
2,804,730	+		GFF2772	0.37	+1.1
2,804,730	+		GFF2772	0.37	+0.3
2,804,730	+		GFF2772	0.37	-0.3
2,804,732	+		GFF2772	0.38	-0.9
2,804,733	-		GFF2772	0.38	-0.1
2,804,733	-		GFF2772	0.38	-1.2
2,804,733	-		GFF2772	0.38	+0.8
2,804,733	-		GFF2772	0.38	-0.4
2,804,733	-		GFF2772	0.38	+0.5
2,804,733	-		GFF2772	0.38	-0.2
2,804,738	-		GFF2772	0.39	-0.5
2,804,738	-		GFF2772	0.39	+1.0
2,804,740	-		GFF2772	0.39	-1.2
2,804,772	+		GFF2772	0.45	-1.2
2,804,785	+		GFF2772	0.47	-1.4
2,804,785	+		GFF2772	0.47	-0.7
2,804,785	-		GFF2772	0.47	-0.0
2,804,787	+		GFF2772	0.48	-0.7
2,804,793	-		GFF2772	0.49	-0.9
2,804,809	+		GFF2772	0.52	-0.4
2,804,809	+		GFF2772	0.52	+0.1
2,804,809	+		GFF2772	0.52	-1.4
2,804,817	-		GFF2772	0.53	+0.0
2,804,817	-		GFF2772	0.53	-0.7
2,804,817	-		GFF2772	0.53	+0.7
2,804,817	-		GFF2772	0.53	-0.9
2,804,835	+		GFF2772	0.56	-0.7
2,804,843	-		GFF2772	0.58	-1.8
2,804,854	+		GFF2772	0.60	+1.1
2,804,870	+		GFF2772	0.63	+0.8
2,804,886	+		GFF2772	0.66	-0.3
2,804,889	-		GFF2772	0.66	+0.6
2,804,894	-		GFF2772	0.67	-1.7
2,804,937	+		GFF2772	0.75	-0.5
2,804,954	-		GFF2772	0.78	-1.9
2,804,965	+		GFF2772	0.80	+0.5
2,804,970	+		GFF2772	0.81	-0.1
2,804,970	+		GFF2772	0.81	-0.5
2,804,975	+		GFF2772	0.82	+0.5
2,804,978	-		GFF2772	0.83	+1.1
2,804,978	-		GFF2772	0.83	-1.6
2,804,980	+		GFF2772	0.83	-1.3
2,804,981	-		GFF2772	0.83	-0.6
2,804,990	+		GFF2772	0.85	-0.3
2,804,995	+		GFF2772	0.86	-1.2
2,805,003	-		GFF2772	0.87	-0.4
2,805,023	+				+1.2
2,805,031	-				-0.8
2,805,031	-				-0.7
2,805,049	+				-0.2
2,805,057	-				-2.2
2,805,057	-				-1.7
2,805,057	-				+0.6
2,805,084	-				-0.7
2,805,105	-				-0.1
2,805,115	+				+1.0
2,805,120	+				+0.1
2,805,120	+				+1.1
2,805,128	-				-0.3
2,805,128	-				-1.0
2,805,159	-		GFF2773	0.14	-1.2
2,805,166	+		GFF2773	0.16	+0.4
2,805,171	+		GFF2773	0.17	-1.6
2,805,174	-		GFF2773	0.17	-0.8
2,805,174	-		GFF2773	0.17	-2.3
2,805,193	+		GFF2773	0.21	+0.0
2,805,195	-		GFF2773	0.21	-2.4
2,805,239	+		GFF2773	0.30	-1.0
2,805,241	+		GFF2773	0.30	-0.1
2,805,241	+		GFF2773	0.30	-1.2
2,805,241	+		GFF2773	0.30	-1.3
2,805,241	+		GFF2773	0.30	-0.4
2,805,241	+		GFF2773	0.30	+0.7
2,805,241	+		GFF2773	0.30	-0.3
2,805,241	+		GFF2773	0.30	-1.9
2,805,241	+		GFF2773	0.30	-1.7
2,805,241	+		GFF2773	0.30	-0.5
2,805,241	+		GFF2773	0.30	+0.4
2,805,241	+		GFF2773	0.30	-0.3
2,805,241	+		GFF2773	0.30	-0.6
2,805,241	+		GFF2773	0.30	-2.7
2,805,241	+		GFF2773	0.30	+0.4
2,805,241	+		GFF2773	0.30	+1.1
2,805,241	+		GFF2773	0.30	-1.6
2,805,241	+		GFF2773	0.30	+1.1
2,805,241	+		GFF2773	0.30	-0.4
2,805,241	+		GFF2773	0.30	-2.9
2,805,241	+		GFF2773	0.30	+0.4
2,805,241	+		GFF2773	0.30	-1.0
2,805,241	+		GFF2773	0.30	+0.8
2,805,241	+		GFF2773	0.30	-0.3
2,805,241	+		GFF2773	0.30	-2.2
2,805,241	+		GFF2773	0.30	-1.2
2,805,241	+		GFF2773	0.30	+1.5
2,805,241	+		GFF2773	0.30	+1.7
2,805,241	+		GFF2773	0.30	-0.5
2,805,241	+		GFF2773	0.30	+0.7
2,805,241	+		GFF2773	0.30	-0.5
2,805,241	+		GFF2773	0.30	+0.2
2,805,241	+		GFF2773	0.30	+0.1
2,805,241	+		GFF2773	0.30	+0.0
2,805,246	+		GFF2773	0.31	+0.1
2,805,246	+		GFF2773	0.31	+1.0
2,805,246	+		GFF2773	0.31	+0.5
2,805,246	+		GFF2773	0.31	-0.6
2,805,246	+		GFF2773	0.31	-0.3
2,805,246	+		GFF2773	0.31	+0.4
2,805,247	-		GFF2773	0.32	+1.4
2,805,249	-		GFF2773	0.32	-1.0
2,805,249	-		GFF2773	0.32	-0.4
2,805,249	-		GFF2773	0.32	-1.0
2,805,249	-		GFF2773	0.32	-1.4
2,805,249	-		GFF2773	0.32	-1.5
2,805,249	-		GFF2773	0.32	-1.8
2,805,249	-		GFF2773	0.32	-0.7
2,805,249	-		GFF2773	0.32	-0.2
2,805,249	-		GFF2773	0.32	-1.0
2,805,249	-		GFF2773	0.32	-1.9
2,805,249	-		GFF2773	0.32	+0.3
2,805,249	-		GFF2773	0.32	-0.8
2,805,249	-		GFF2773	0.32	-0.3
2,805,249	-		GFF2773	0.32	-2.0
2,805,249	-		GFF2773	0.32	-1.7
2,805,249	-		GFF2773	0.32	-1.6
2,805,249	-		GFF2773	0.32	+1.0
2,805,249	-		GFF2773	0.32	-0.4
2,805,249	-		GFF2773	0.32	-1.0
2,805,249	-		GFF2773	0.32	-0.1
2,805,249	-		GFF2773	0.32	-1.2
2,805,249	-		GFF2773	0.32	-0.2
2,805,249	-		GFF2773	0.32	+1.2
2,805,249	-		GFF2773	0.32	-0.6
2,805,249	-		GFF2773	0.32	+0.2
2,805,254	-		GFF2773	0.33	+0.2
2,805,254	-		GFF2773	0.33	-0.9
2,805,265	+		GFF2773	0.35	-1.4
2,805,277	-		GFF2773	0.37	-0.6
2,805,287	-		GFF2773	0.39	+1.1
2,805,300	+		GFF2773	0.42	+0.3
2,805,300	+		GFF2773	0.42	+0.5
2,805,300	+		GFF2773	0.42	-0.2
2,805,300	+		GFF2773	0.42	-1.3
2,805,300	+		GFF2773	0.42	-2.4
2,805,308	+		GFF2773	0.43	+0.7
2,805,308	-		GFF2773	0.43	+0.2
2,805,308	-		GFF2773	0.43	-0.0
2,805,308	-		GFF2773	0.43	-1.3
2,805,310	+		GFF2773	0.44	+1.3
2,805,310	+		GFF2773	0.44	+0.1
2,805,310	+		GFF2773	0.44	-1.3
2,805,310	+		GFF2773	0.44	-0.4
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