Strain Fitness in Sphingobium sp. HT1-2 around GFF2763

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,794,278	+		GFF2762	0.31	+0.2
2,794,278	+		GFF2762	0.31	+0.2
2,794,283	+		GFF2762	0.31	+0.0
2,794,283	+		GFF2762	0.31	+1.1
2,794,283	+		GFF2762	0.31	+1.0
2,794,283	+		GFF2762	0.31	-0.8
2,794,283	+		GFF2762	0.31	-2.8
2,794,283	+		GFF2762	0.31	+0.3
2,794,283	+		GFF2762	0.31	+0.6
2,794,283	+		GFF2762	0.31	+0.6
2,794,283	+		GFF2762	0.31	-0.5
2,794,283	+		GFF2762	0.31	-0.2
2,794,283	+		GFF2762	0.31	-1.3
2,794,283	+		GFF2762	0.31	+0.3
2,794,283	+		GFF2762	0.31	+0.2
2,794,283	+		GFF2762	0.31	-0.7
2,794,283	+		GFF2762	0.31	-1.5
2,794,283	+		GFF2762	0.31	-0.5
2,794,286	-		GFF2762	0.31	-0.5
2,794,286	-		GFF2762	0.31	-1.7
2,794,288	+		GFF2762	0.32	-1.4
2,794,288	+		GFF2762	0.32	-1.7
2,794,291	-		GFF2762	0.32	-1.4
2,794,291	-		GFF2762	0.32	+0.4
2,794,291	-		GFF2762	0.32	-0.6
2,794,291	-		GFF2762	0.32	-1.6
2,794,291	-		GFF2762	0.32	+0.9
2,794,291	-		GFF2762	0.32	+0.5
2,794,291	-		GFF2762	0.32	-0.1
2,794,291	-		GFF2762	0.32	-0.5
2,794,291	-		GFF2762	0.32	-0.5
2,794,291	-		GFF2762	0.32	-0.2
2,794,291	-		GFF2762	0.32	+0.4
2,794,291	-		GFF2762	0.32	-0.5
2,794,291	-		GFF2762	0.32	-0.3
2,794,291	-		GFF2762	0.32	+0.8
2,794,291	-		GFF2762	0.32	-2.3
2,794,291	-		GFF2762	0.32	-0.9
2,794,291	-		GFF2762	0.32	-1.7
2,794,291	-		GFF2762	0.32	-2.0
2,794,291	-		GFF2762	0.32	-0.1
2,794,291	-		GFF2762	0.32	+0.4
2,794,291	-		GFF2762	0.32	-1.2
2,794,291	-		GFF2762	0.32	+0.2
2,794,296	-		GFF2762	0.32	-1.8
2,794,296	-		GFF2762	0.32	+0.6
2,794,301	-		GFF2762	0.33	-0.7
2,794,325	+		GFF2762	0.34	-0.1
2,794,325	+		GFF2762	0.34	-0.9
2,794,338	-		GFF2762	0.35	+0.1
2,794,350	+		GFF2762	0.36	+0.4
2,794,354	+		GFF2762	0.36	-0.3
2,794,358	-		GFF2762	0.37	+1.8
2,794,360	+		GFF2762	0.37	-1.7
2,794,363	-		GFF2762	0.37	-1.4
2,794,401	+		GFF2762	0.40	+0.3
2,794,438	+		GFF2762	0.43	-1.0
2,794,449	+		GFF2762	0.43	+0.1
2,794,456	+		GFF2762	0.44	-0.5
2,794,456	+		GFF2762	0.44	+0.8
2,794,456	+		GFF2762	0.44	-1.5
2,794,456	+		GFF2762	0.44	-0.4
2,794,457	-		GFF2762	0.44	+0.9
2,794,457	-		GFF2762	0.44	-0.9
2,794,458	+		GFF2762	0.44	-1.3
2,794,464	-		GFF2762	0.45	+0.4
2,794,464	-		GFF2762	0.45	-0.6
2,794,464	-		GFF2762	0.45	-0.3
2,794,464	-		GFF2762	0.45	-0.3
2,794,464	-		GFF2762	0.45	-0.0
2,794,464	-		GFF2762	0.45	-0.2
2,794,468	+		GFF2762	0.45	+1.4
2,794,468	+		GFF2762	0.45	-0.6
2,794,472	-		GFF2762	0.45	+0.3
2,794,475	+		GFF2762	0.45	-1.3
2,794,476	-		GFF2762	0.45	-0.2
2,794,477	-		GFF2762	0.46	+0.2
2,794,509	+		GFF2762	0.48	-0.9
2,794,509	+		GFF2762	0.48	-0.9
2,794,528	+		GFF2762	0.49	-0.7
2,794,528	+		GFF2762	0.49	-0.7
2,794,528	+		GFF2762	0.49	-1.2
2,794,528	+		GFF2762	0.49	+0.5
2,794,528	+		GFF2762	0.49	+1.0
2,794,528	+		GFF2762	0.49	+1.7
2,794,528	+		GFF2762	0.49	+0.2
2,794,528	+		GFF2762	0.49	-0.4
2,794,528	+		GFF2762	0.49	-2.4
2,794,528	+		GFF2762	0.49	+0.4
2,794,528	+		GFF2762	0.49	-0.6
2,794,528	+		GFF2762	0.49	+0.3
2,794,528	+		GFF2762	0.49	-0.0
2,794,536	-		GFF2762	0.50	+0.8
2,794,536	-		GFF2762	0.50	-0.8
2,794,536	-		GFF2762	0.50	+0.0
2,794,536	-		GFF2762	0.50	-0.6
2,794,536	-		GFF2762	0.50	-1.5
2,794,536	-		GFF2762	0.50	-2.9
2,794,549	+		GFF2762	0.51	-0.5
2,794,551	-		GFF2762	0.51	-0.6
2,794,569	+		GFF2762	0.52	+0.1
2,794,569	+		GFF2762	0.52	-0.2
2,794,594	-		GFF2762	0.54	-0.0
2,794,626	+		GFF2762	0.56	-1.2
2,794,668	+		GFF2762	0.60	-0.2
2,794,668	+		GFF2762	0.60	+0.3
2,794,676	+		GFF2762	0.60	-2.5
2,794,676	-		GFF2762	0.60	+0.9
2,794,678	+		GFF2762	0.60	-1.6
2,794,678	+		GFF2762	0.60	-0.5
2,794,693	+		GFF2762	0.61	-0.5
2,794,702	-		GFF2762	0.62	-1.8
2,794,703	-		GFF2762	0.62	+1.6
2,794,722	-		GFF2762	0.64	-0.3
2,794,742	-		GFF2762	0.65	-1.0
2,794,752	+		GFF2762	0.66	-1.5
2,794,803	-		GFF2762	0.70	+0.9
2,794,818	+		GFF2762	0.71	-1.2
2,794,823	+		GFF2762	0.71	-0.1
2,794,823	+		GFF2762	0.71	+1.0
2,794,825	-		GFF2762	0.71	+0.9
2,794,826	-		GFF2762	0.71	+0.4
2,794,828	+		GFF2762	0.71	+0.1
2,794,831	-		GFF2762	0.72	-0.4
2,794,847	-		GFF2762	0.73	-1.4
2,794,848	+		GFF2762	0.73	+0.2
2,794,856	-		GFF2762	0.73	+0.4
2,794,863	+		GFF2762	0.74	-1.0
2,794,863	+		GFF2762	0.74	+0.7
2,794,863	+		GFF2762	0.74	+0.6
2,794,863	+		GFF2762	0.74	+0.6
2,794,863	+		GFF2762	0.74	+0.6
2,794,871	-		GFF2762	0.75	-0.5
2,794,871	-		GFF2762	0.75	+0.6
2,794,887	-		GFF2762	0.76	+0.7
2,794,904	+		GFF2762	0.77	-0.5
2,794,907	-		GFF2762	0.77	-0.5
2,794,907	-		GFF2762	0.77	-1.9
2,794,907	-		GFF2762	0.77	-0.8
2,794,909	+		GFF2762	0.77	+1.2
2,794,917	-		GFF2762	0.78	-0.4
2,794,931	-		GFF2762	0.79	-0.9
2,794,945	+		GFF2762	0.80	-1.7
2,794,950	-		GFF2762	0.80	+0.9
2,794,973	+		GFF2762	0.82	-0.2
2,794,982	+		GFF2762	0.83	-0.4
2,795,013	+		GFF2762	0.85	+0.2
2,795,014	+		GFF2762	0.85	-0.4
2,795,021	-		GFF2762	0.86	-0.1
2,795,021	-		GFF2762	0.86	+0.3
2,795,021	-		GFF2762	0.86	-0.6
2,795,025	-		GFF2762	0.86	-0.8
2,795,042	+		GFF2762	0.87	+0.1
2,795,066	+		GFF2762	0.89	-0.2
2,795,081	+				-1.7
2,795,088	+				-0.0
2,795,088	+				-1.7
2,795,088	+				-0.7
2,795,088	+				+0.6
2,795,091	-				-1.7
2,795,176	+				-1.3
2,795,176	+				+0.0
2,795,176	+				-0.8
2,795,179	-				-1.0
2,795,186	+				+0.2
2,795,186	+				-0.7
2,795,186	+				-0.6
2,795,194	-				-2.2
2,795,200	+				+0.5
2,795,200	+				-0.8
2,795,200	+				-1.0
2,795,200	+				-0.6
2,795,200	+				-2.3
2,795,208	-				-0.7
2,795,208	-				-0.4
2,795,208	-				+0.1
2,795,208	-				-1.7
2,795,208	-				-0.7
2,795,208	-				-1.9
2,795,208	-				-0.2
2,795,214	-				-0.9
2,795,219	+				-0.3
2,795,231	+				+0.4
2,795,231	+				+0.3
2,795,231	+				-1.2
2,795,232	-				-2.0
2,795,243	+				+0.0
2,795,244	+				-1.3
2,795,253	+				-1.4
2,795,276	-				-2.0
2,795,281	+				-0.4
2,795,283	+				+0.8
2,795,309	+				-1.9
2,795,317	-				+0.3
2,795,317	-				-0.5
2,795,329	+				-0.3
2,795,329	+				-0.4
2,795,329	+				+0.1
2,795,337	-		GFF2763	0.11	-1.0
2,795,337	-		GFF2763	0.11	-1.2
2,795,342	-		GFF2763	0.11	-0.9
2,795,351	+		GFF2763	0.12	-0.6
2,795,364	+		GFF2763	0.14	-1.3
2,795,365	+		GFF2763	0.14	-1.4
2,795,365	+		GFF2763	0.14	-0.0
2,795,371	+		GFF2763	0.14	-0.1
2,795,371	+		GFF2763	0.14	+0.5
2,795,373	-		GFF2763	0.15	+0.6
2,795,373	-		GFF2763	0.15	-2.2
2,795,380	+		GFF2763	0.15	+0.3
2,795,383	-		GFF2763	0.16	-1.3
2,795,401	+		GFF2763	0.18	-1.2
2,795,421	+		GFF2763	0.20	+0.2
2,795,421	+		GFF2763	0.20	-1.2
2,795,429	-		GFF2763	0.21	-2.0
2,795,433	-		GFF2763	0.21	+0.8
2,795,458	+		GFF2763	0.24	-0.3
2,795,467	+		GFF2763	0.25	-0.4
2,795,475	-		GFF2763	0.26	-0.5
2,795,477	+		GFF2763	0.26	-0.3
2,795,485	+		GFF2763	0.27	-1.0
2,795,493	-		GFF2763	0.28	-0.6
2,795,497	+		GFF2763	0.29	-0.1
2,795,499	+		GFF2763	0.29	-0.2
2,795,499	+		GFF2763	0.29	+0.3
2,795,499	+		GFF2763	0.29	+0.4
2,795,499	+		GFF2763	0.29	-0.3
2,795,507	-		GFF2763	0.30	-0.6
2,795,522	+		GFF2763	0.31	-1.4
2,795,522	+		GFF2763	0.31	-0.3
2,795,539	+		GFF2763	0.33	-2.1
2,795,540	-		GFF2763	0.33	-0.1
2,795,554	+		GFF2763	0.35	-0.2
2,795,554	+		GFF2763	0.35	+0.8
2,795,555	+		GFF2763	0.35	+0.3
2,795,557	-		GFF2763	0.35	-1.1
2,795,564	+		GFF2763	0.36	+1.1
2,795,565	-		GFF2763	0.36	-0.5
2,795,574	+		GFF2763	0.37	+0.1
2,795,574	+		GFF2763	0.37	-0.8
2,795,582	-		GFF2763	0.38	-1.5
2,795,582	-		GFF2763	0.38	-0.8
2,795,582	-		GFF2763	0.38	+0.6
2,795,600	-		GFF2763	0.40	+0.3
2,795,602	+		GFF2763	0.40	-0.8
2,795,602	+		GFF2763	0.40	-2.0
2,795,602	+		GFF2763	0.40	+0.6
2,795,602	+		GFF2763	0.40	+1.1
2,795,602	+		GFF2763	0.40	-0.4
2,795,602	+		GFF2763	0.40	+0.4
2,795,602	+		GFF2763	0.40	-2.0
2,795,602	+		GFF2763	0.40	-0.6
2,795,602	+		GFF2763	0.40	-2.6
2,795,610	-		GFF2763	0.41	-0.4
2,795,610	-		GFF2763	0.41	-0.0
2,795,610	-		GFF2763	0.41	+0.6
2,795,627	-		GFF2763	0.43	-0.3
2,795,666	+		GFF2763	0.47	-0.3
2,795,666	+		GFF2763	0.47	-0.2
2,795,666	+		GFF2763	0.47	+0.8
2,795,674	-		GFF2763	0.48	-0.2
2,795,679	-		GFF2763	0.49	-0.6
2,795,686	+		GFF2763	0.50	-0.7
2,795,698	+		GFF2763	0.51	-0.4
2,795,698	+		GFF2763	0.51	-0.4
2,795,706	+		GFF2763	0.52	-0.1
2,795,706	-		GFF2763	0.52	-0.0
2,795,706	-		GFF2763	0.52	-0.4
2,795,706	-		GFF2763	0.52	+0.6
2,795,707	+		GFF2763	0.52	+0.2
2,795,718	+		GFF2763	0.53	+0.7
2,795,748	+		GFF2763	0.57	-1.7
2,795,756	-		GFF2763	0.57	-0.6
2,795,774	-		GFF2763	0.59	-1.6
2,795,784	+		GFF2763	0.61	-0.9
2,795,792	+		GFF2763	0.61	-0.6
2,795,792	+		GFF2763	0.61	+0.9
2,795,792	+		GFF2763	0.61	+0.8
2,795,792	+		GFF2763	0.61	+1.3
2,795,792	+		GFF2763	0.61	-0.4
2,795,792	+		GFF2763	0.61	-0.4
2,795,792	+		GFF2763	0.61	-1.2
2,795,792	-		GFF2763	0.61	-2.0
2,795,800	-		GFF2763	0.62	+0.6
2,795,800	-		GFF2763	0.62	+0.2
2,795,808	+		GFF2763	0.63	-2.7
2,795,813	+		GFF2763	0.64	-2.2
2,795,813	+		GFF2763	0.64	-0.8
2,795,816	-		GFF2763	0.64	+0.4
2,795,821	-		GFF2763	0.65	-0.8
2,795,821	-		GFF2763	0.65	-0.5
2,795,822	-		GFF2763	0.65	+0.1
2,795,822	-		GFF2763	0.65	-0.7
2,795,858	+		GFF2763	0.69	-0.7
2,795,858	+		GFF2763	0.69	-0.5
2,795,858	+		GFF2763	0.69	-0.2
2,795,859	+		GFF2763	0.69	-0.2
2,795,859	+		GFF2763	0.69	-1.2
2,795,859	+		GFF2763	0.69	-0.1
2,795,859	+		GFF2763	0.69	-1.8
2,795,859	+		GFF2763	0.69	-0.4
2,795,859	+		GFF2763	0.69	+0.4
2,795,859	+		GFF2763	0.69	+0.3
2,795,859	+		GFF2763	0.69	-1.2
2,795,859	+		GFF2763	0.69	-2.6
2,795,859	+		GFF2763	0.69	+1.3
2,795,859	+		GFF2763	0.69	-0.8
2,795,859	+		GFF2763	0.69	-0.6
2,795,859	+		GFF2763	0.69	-0.4
2,795,859	+		GFF2763	0.69	+0.4
2,795,859	+		GFF2763	0.69	+0.5
2,795,859	+		GFF2763	0.69	+1.2
2,795,859	+		GFF2763	0.69	-0.6
2,795,859	+		GFF2763	0.69	-0.1
2,795,859	+		GFF2763	0.69	-1.0
2,795,859	+		GFF2763	0.69	+0.3
2,795,859	+		GFF2763	0.69	+0.4
2,795,859	+		GFF2763	0.69	+0.6
2,795,859	+		GFF2763	0.69	+1.4
2,795,859	+		GFF2763	0.69	-2.4
2,795,859	+		GFF2763	0.69	-1.0
2,795,859	+		GFF2763	0.69	+0.1
2,795,859	+		GFF2763	0.69	-2.2
2,795,859	+		GFF2763	0.69	-0.4
2,795,859	+		GFF2763	0.69	+1.0
2,795,859	+		GFF2763	0.69	+0.4
2,795,859	+		GFF2763	0.69	+0.3
2,795,866	-		GFF2763	0.70	-0.0
2,795,866	-		GFF2763	0.70	-0.2
2,795,867	-		GFF2763	0.70	+0.8
2,795,867	-		GFF2763	0.70	-1.4
2,795,867	-		GFF2763	0.70	-0.8
2,795,867	-		GFF2763	0.70	+0.3
2,795,867	-		GFF2763	0.70	+1.3
2,795,867	-		GFF2763	0.70	+0.9
2,795,867	-		GFF2763	0.70	-1.4
2,795,867	-		GFF2763	0.70	+0.3
2,795,867	-		GFF2763	0.70	+0.1
2,795,867	-		GFF2763	0.70	+0.1
2,795,867	-		GFF2763	0.70	-1.3
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