Strain Fitness in Sphingobium sp. HT1-2 around GFF2754

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,779,799	-		GFF2752	0.79	-0.2
2,779,878	-		GFF2752	0.84	+1.0
2,779,898	-		GFF2752	0.86	-1.4
2,779,924	+		GFF2752	0.87	-0.2
2,779,924	+		GFF2752	0.87	-1.3
2,779,926	-		GFF2752	0.88	+1.4
2,779,932	-		GFF2752	0.88	-0.8
2,779,965	+				+1.1
2,780,056	+				+0.3
2,780,056	+				+0.3
2,780,056	+				+0.2
2,780,124	+				-1.5
2,780,132	-				-1.9
2,780,132	-				+0.3
2,780,204	+		GFF2753	0.15	-1.4
2,780,245	-		GFF2753	0.21	-1.2
2,780,245	-		GFF2753	0.21	-1.0
2,780,329	-		GFF2753	0.33	-2.0
2,780,343	+		GFF2753	0.36	-0.2
2,780,343	+		GFF2753	0.36	-1.7
2,780,351	-		GFF2753	0.37	+0.3
2,780,351	-		GFF2753	0.37	-0.8
2,780,351	-		GFF2753	0.37	+1.4
2,780,423	-		GFF2753	0.48	-0.5
2,780,447	+		GFF2753	0.51	+0.7
2,780,447	+		GFF2753	0.51	-1.0
2,780,455	-		GFF2753	0.52	-1.3
2,780,455	-		GFF2753	0.52	+0.3
2,780,455	-		GFF2753	0.52	-1.7
2,780,606	+		GFF2753	0.75	+1.0
2,780,665	-		GFF2753	0.84	-1.5
2,780,673	-		GFF2753	0.85	-1.4
2,780,676	+		GFF2753	0.85	-0.3
2,780,676	+		GFF2753	0.85	-1.6
2,780,686	+		GFF2753	0.87	-0.2
2,780,733	+				-0.7
2,780,739	+				-0.5
2,780,743	+				-1.0
2,780,743	+				-0.8
2,780,754	+				-0.5
2,780,794	-				-1.2
2,780,805	-				-1.5
2,780,832	-				-1.4
2,780,865	-				-2.1
2,781,009	+				-0.8
2,781,009	+				+0.4
2,781,098	+				-0.2
2,781,098	+				+0.7
2,781,098	+				-0.3
2,781,118	-		GFF2754	0.10	-1.6
2,781,187	-		GFF2754	0.12	+1.6
2,781,237	-		GFF2754	0.14	+0.6
2,781,237	-		GFF2754	0.14	-1.4
2,781,256	+		GFF2754	0.14	+0.4
2,781,256	+		GFF2754	0.14	-1.3
2,781,259	-		GFF2754	0.14	+1.4
2,781,264	-		GFF2754	0.14	-0.7
2,781,264	-		GFF2754	0.14	-0.3
2,781,264	-		GFF2754	0.14	+0.6
2,781,264	-		GFF2754	0.14	+1.3
2,781,269	-		GFF2754	0.14	-1.8
2,781,269	-		GFF2754	0.14	-1.0
2,781,347	-		GFF2754	0.17	-0.7
2,781,421	+		GFF2754	0.19	-1.7
2,781,421	+		GFF2754	0.19	+0.2
2,781,421	+		GFF2754	0.19	-0.9
2,781,429	-		GFF2754	0.19	-0.5
2,781,535	-		GFF2754	0.22	+0.3
2,781,634	+		GFF2754	0.25	-1.3
2,781,727	-		GFF2754	0.28	-1.8
2,781,749	-		GFF2754	0.28	+0.4
2,781,783	+		GFF2754	0.29	-0.2
2,781,787	+		GFF2754	0.30	-1.6
2,781,865	+		GFF2754	0.32	-0.5
2,781,882	-		GFF2754	0.32	-1.4
2,781,913	-		GFF2754	0.33	-1.2
2,781,913	-		GFF2754	0.33	-0.9
2,781,968	-		GFF2754	0.35	+0.5
2,781,968	-		GFF2754	0.35	+0.7
2,782,006	+		GFF2754	0.36	-0.0
2,782,079	+		GFF2754	0.38	+0.6
2,782,146	+		GFF2754	0.40	+1.7
2,782,191	-		GFF2754	0.41	+1.1
2,782,191	-		GFF2754	0.41	-0.4
2,782,336	+		GFF2754	0.45	-0.7
2,782,528	+		GFF2754	0.51	-1.2
2,782,528	+		GFF2754	0.51	-1.5
2,782,536	-		GFF2754	0.51	-0.8
2,782,544	+		GFF2754	0.52	+0.1
2,782,689	+		GFF2754	0.56	-1.2
2,782,703	-		GFF2754	0.56	+0.7
2,782,912	+		GFF2754	0.62	-0.3
2,782,923	+		GFF2754	0.63	+0.3
2,783,003	-		GFF2754	0.65	-1.4
2,783,043	-		GFF2754	0.66	-0.8
2,783,047	+		GFF2754	0.66	-1.3
2,783,079	+		GFF2754	0.67	-0.3
2,783,087	-		GFF2754	0.67	-1.4
2,783,140	-		GFF2754	0.69	+0.4
2,783,140	-		GFF2754	0.69	-1.3
2,783,157	+		GFF2754	0.69	+0.2
2,783,157	+		GFF2754	0.69	+0.6
2,783,165	-		GFF2754	0.70	+0.1
2,783,199	-		GFF2754	0.71	-0.3
2,783,250	+		GFF2754	0.72	+0.6
2,783,279	+		GFF2754	0.73	-0.3
2,783,284	+		GFF2754	0.73	-0.3
2,783,289	+		GFF2754	0.73	-0.6
2,783,316	+		GFF2754	0.74	-1.0
2,783,377	-		GFF2754	0.76	+0.3
2,783,525	-		GFF2754	0.80	+1.2
2,783,527	+		GFF2754	0.80	-0.2
2,783,535	-		GFF2754	0.80	+0.4
2,783,570	-		GFF2754	0.81	-0.6
2,783,611	+		GFF2754	0.82	-1.7
2,783,795	-		GFF2754	0.88	+0.3
2,783,821	-		GFF2754	0.89	+1.2
2,783,848	+		GFF2754	0.89	+0.2
2,783,858	+		GFF2754	0.90	-1.3
2,783,902	+				-1.0
2,783,948	+				-1.3
2,783,956	-				-0.3
2,783,956	-				+0.8
2,783,956	-				-1.1
2,784,090	+				+0.8
2,784,159	-				+0.8
2,784,159	-				-0.9
2,784,161	+				-0.2
2,784,179	+				-0.8
2,784,179	-				+0.6
2,784,193	+				-1.0
2,784,193	+				+0.7
2,784,198	+				-0.9
2,784,198	+				-0.9
2,784,201	-				-3.6
2,784,201	-				-0.3
2,784,203	+				-1.2
2,784,208	+				-0.6
2,784,220	-				-2.8
2,784,229	-				+0.8
2,784,231	+				-1.0
2,784,246	+				-2.6
2,784,246	+				-0.6
2,784,252	-				+0.4
2,784,257	+				+0.2
2,784,275	-				+0.1
2,784,288	+				-1.3
2,784,288	+				+0.4
2,784,288	+				-0.1
2,784,296	-				+0.1
2,784,296	-				-0.7
2,784,296	-				-0.9
2,784,296	-				-1.0
2,784,301	+				-0.2
2,784,301	+				+0.5
2,784,301	+				+0.2
2,784,301	+				-1.6
2,784,301	+				+0.0
2,784,303	-				-0.0
2,784,309	-				-3.7
2,784,309	-				-0.9
2,784,309	-				-0.3
2,784,310	+				+0.8
2,784,310	+				-0.2
2,784,318	-				-0.1
2,784,331	+				-0.2
2,784,331	+				-0.6
2,784,331	+				-0.8
2,784,334	+				-0.9
2,784,337	+				+0.1
2,784,339	-				-0.7
2,784,339	-				-0.2
2,784,339	-				-1.4
2,784,339	-				+0.5
2,784,339	-				-0.5
2,784,353	+				+0.8
2,784,358	-				-0.6
2,784,361	-				-0.4
2,784,372	+				-1.0
2,784,372	+				+0.0
2,784,372	+				-0.3
2,784,385	+				+0.0
2,784,397	-				-1.2
2,784,397	-				+1.1
2,784,399	+				-0.2
2,784,400	+				-0.5
2,784,408	-		GFF2755	0.10	-1.4
2,784,408	-		GFF2755	0.10	-1.5
2,784,418	+		GFF2755	0.11	-0.6
2,784,439	+		GFF2755	0.12	+0.5
2,784,447	-		GFF2755	0.13	-0.9
2,784,469	+		GFF2755	0.14	-0.6
2,784,507	-		GFF2755	0.17	+0.2
2,784,532	+		GFF2755	0.19	+0.3
2,784,548	+		GFF2755	0.20	+1.1
2,784,548	+		GFF2755	0.20	+0.1
2,784,556	-		GFF2755	0.20	-1.4
2,784,561	-		GFF2755	0.21	-1.6
2,784,565	-		GFF2755	0.21	-0.4
2,784,567	+		GFF2755	0.21	+0.5
2,784,567	+		GFF2755	0.21	-0.9
2,784,572	+		GFF2755	0.22	-0.3
2,784,575	-		GFF2755	0.22	-0.6
2,784,575	-		GFF2755	0.22	-2.1
2,784,577	+		GFF2755	0.22	+0.1
2,784,577	+		GFF2755	0.22	-1.5
2,784,621	+		GFF2755	0.25	+0.1
2,784,637	+		GFF2755	0.26	-0.3
2,784,665	-		GFF2755	0.28	+0.3
2,784,667	+		GFF2755	0.28	+0.3
2,784,669	-		GFF2755	0.28	-0.5
2,784,674	-		GFF2755	0.29	-1.6
2,784,675	-		GFF2755	0.29	+0.0
2,784,677	+		GFF2755	0.29	-2.0
2,784,696	+		GFF2755	0.30	+0.1
2,784,701	+		GFF2755	0.31	-0.5
2,784,703	-		GFF2755	0.31	-0.4
2,784,709	-		GFF2755	0.31	+0.7
2,784,712	+		GFF2755	0.31	+0.0
2,784,712	+		GFF2755	0.31	+0.1
2,784,747	+		GFF2755	0.34	+0.2
2,784,747	+		GFF2755	0.34	-0.3
2,784,748	+		GFF2755	0.34	+0.1
2,784,748	+		GFF2755	0.34	-1.6
2,784,748	+		GFF2755	0.34	-1.1
2,784,748	+		GFF2755	0.34	-0.5
2,784,748	+		GFF2755	0.34	-0.4
2,784,749	-		GFF2755	0.34	+0.9
2,784,756	-		GFF2755	0.35	-0.0
2,784,756	-		GFF2755	0.35	-0.8
2,784,756	-		GFF2755	0.35	+0.7
2,784,782	-		GFF2755	0.36	-1.5
2,784,799	+		GFF2755	0.38	+0.1
2,784,836	+		GFF2755	0.40	-1.0
2,784,839	-		GFF2755	0.40	-0.5
2,784,844	-		GFF2755	0.41	-0.4
2,784,849	-		GFF2755	0.41	+0.0
2,784,853	+		GFF2755	0.41	+0.3
2,784,859	-		GFF2755	0.42	-0.5
2,784,861	-		GFF2755	0.42	-0.4
2,784,861	-		GFF2755	0.42	-0.4
2,784,887	+		GFF2755	0.44	-0.4
2,784,921	-		GFF2755	0.46	+0.6
2,784,935	+		GFF2755	0.47	-0.5
2,784,944	+		GFF2755	0.48	+0.1
2,784,944	+		GFF2755	0.48	-1.4
2,784,944	+		GFF2755	0.48	-0.2
2,784,944	+		GFF2755	0.48	-0.8
2,784,949	+		GFF2755	0.48	-1.6
2,784,952	-		GFF2755	0.48	-0.1
2,784,952	-		GFF2755	0.48	-0.9
2,784,952	-		GFF2755	0.48	+0.1
2,784,967	+		GFF2755	0.49	+0.4
2,784,972	+		GFF2755	0.50	-1.7
2,784,996	+		GFF2755	0.51	-0.4
2,784,999	-		GFF2755	0.52	-0.8
2,785,001	+		GFF2755	0.52	+0.7
2,785,001	+		GFF2755	0.52	-0.5
2,785,004	-		GFF2755	0.52	+0.3
2,785,009	+		GFF2755	0.52	-1.8
2,785,009	+		GFF2755	0.52	+0.9
2,785,009	+		GFF2755	0.52	-1.0
2,785,014	-		GFF2755	0.53	+1.2
2,785,032	-		GFF2755	0.54	+0.2
2,785,043	-		GFF2755	0.55	-0.1
2,785,067	-		GFF2755	0.56	-1.0
2,785,067	-		GFF2755	0.56	+0.5
2,785,076	+		GFF2755	0.57	-0.3
2,785,078	-		GFF2755	0.57	-0.7
2,785,087	-		GFF2755	0.58	-0.1
2,785,100	+		GFF2755	0.59	-1.8
2,785,100	+		GFF2755	0.59	+1.2
2,785,108	-		GFF2755	0.59	-2.1
2,785,148	+		GFF2755	0.62	-1.4
2,785,156	-		GFF2755	0.63	-1.7
2,785,158	+		GFF2755	0.63	-1.2
2,785,161	-		GFF2755	0.63	-0.8
2,785,200	-		GFF2755	0.66	-2.2
2,785,203	+		GFF2755	0.66	+0.9
2,785,203	+		GFF2755	0.66	-1.2