Strain Fitness in Sphingobium sp. HT1-2 around GFF2735

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,760,201	+		GFF2734	0.20	+0.6
2,760,201	+		GFF2734	0.20	-0.7
2,760,204	-		GFF2734	0.20	-0.6
2,760,204	-		GFF2734	0.20	-2.2
2,760,204	-		GFF2734	0.20	+0.6
2,760,204	-		GFF2734	0.20	+0.5
2,760,204	-		GFF2734	0.20	+1.1
2,760,204	-		GFF2734	0.20	-2.9
2,760,209	-		GFF2734	0.21	+0.4
2,760,209	-		GFF2734	0.21	-0.7
2,760,234	+		GFF2734	0.23	+0.1
2,760,242	-		GFF2734	0.23	+0.7
2,760,251	+		GFF2734	0.24	-0.7
2,760,251	-		GFF2734	0.24	+0.3
2,760,261	-		GFF2734	0.25	+0.2
2,760,268	+		GFF2734	0.26	+0.3
2,760,278	-		GFF2734	0.26	+0.1
2,760,303	+		GFF2734	0.28	-0.6
2,760,314	+		GFF2734	0.29	+0.4
2,760,314	+		GFF2734	0.29	-2.5
2,760,314	+		GFF2734	0.29	-0.1
2,760,314	+		GFF2734	0.29	-0.3
2,760,314	+		GFF2734	0.29	+0.1
2,760,314	+		GFF2734	0.29	-1.2
2,760,314	+		GFF2734	0.29	-0.0
2,760,314	+		GFF2734	0.29	+1.4
2,760,314	+		GFF2734	0.29	-1.2
2,760,314	+		GFF2734	0.29	-0.8
2,760,321	-		GFF2734	0.30	+0.9
2,760,322	-		GFF2734	0.30	+0.3
2,760,322	-		GFF2734	0.30	+0.3
2,760,322	-		GFF2734	0.30	-0.8
2,760,322	-		GFF2734	0.30	-0.0
2,760,322	-		GFF2734	0.30	-1.8
2,760,322	-		GFF2734	0.30	-1.5
2,760,322	-		GFF2734	0.30	+1.5
2,760,349	-		GFF2734	0.32	-0.0
2,760,366	+		GFF2734	0.33	-1.7
2,760,376	+		GFF2734	0.34	-0.4
2,760,376	+		GFF2734	0.34	-1.3
2,760,376	+		GFF2734	0.34	+0.3
2,760,376	+		GFF2734	0.34	-0.4
2,760,376	+		GFF2734	0.34	-0.0
2,760,379	-		GFF2734	0.34	+1.0
2,760,384	-		GFF2734	0.35	+0.0
2,760,384	-		GFF2734	0.35	-0.4
2,760,384	-		GFF2734	0.35	+1.1
2,760,389	-		GFF2734	0.35	-1.3
2,760,423	+		GFF2734	0.38	-1.0
2,760,424	-		GFF2734	0.38	+0.3
2,760,474	+		GFF2734	0.42	+0.8
2,760,477	-		GFF2734	0.42	+0.1
2,760,482	-		GFF2734	0.43	-1.5
2,760,482	-		GFF2734	0.43	-1.0
2,760,482	-		GFF2734	0.43	-0.4
2,760,499	+		GFF2734	0.44	-0.6
2,760,507	+		GFF2734	0.45	-0.8
2,760,507	+		GFF2734	0.45	-0.5
2,760,515	-		GFF2734	0.45	-0.9
2,760,515	-		GFF2734	0.45	-0.5
2,760,517	+		GFF2734	0.45	+0.1
2,760,517	+		GFF2734	0.45	-1.0
2,760,520	-		GFF2734	0.46	+1.1
2,760,520	-		GFF2734	0.46	-0.5
2,760,525	-		GFF2734	0.46	-1.6
2,760,525	-		GFF2734	0.46	-0.6
2,760,530	-		GFF2734	0.46	-0.5
2,760,530	-		GFF2734	0.46	+0.0
2,760,585	+		GFF2734	0.51	-0.5
2,760,594	+		GFF2734	0.51	-1.3
2,760,594	+		GFF2734	0.51	-0.2
2,760,594	-		GFF2734	0.51	+1.0
2,760,595	+		GFF2734	0.52	-2.1
2,760,602	-		GFF2734	0.52	-0.4
2,760,602	-		GFF2734	0.52	-0.7
2,760,612	-		GFF2734	0.53	+1.6
2,760,612	-		GFF2734	0.53	-0.5
2,760,632	+		GFF2734	0.54	+0.5
2,760,691	+		GFF2734	0.59	+0.0
2,760,743	+		GFF2734	0.63	-1.2
2,760,743	+		GFF2734	0.63	-0.1
2,760,743	+		GFF2734	0.63	+0.8
2,760,743	+		GFF2734	0.63	+0.2
2,760,751	-		GFF2734	0.64	+1.3
2,760,751	-		GFF2734	0.64	-1.0
2,760,751	-		GFF2734	0.64	+0.3
2,760,751	-		GFF2734	0.64	+1.2
2,760,751	-		GFF2734	0.64	+0.5
2,760,773	-		GFF2734	0.66	+0.8
2,760,783	-		GFF2734	0.67	-0.9
2,760,803	+		GFF2734	0.68	-0.6
2,760,813	+		GFF2734	0.69	+0.3
2,760,813	+		GFF2734	0.69	-0.7
2,760,813	+		GFF2734	0.69	+0.2
2,760,827	-		GFF2734	0.70	+1.0
2,760,844	+		GFF2734	0.71	-1.4
2,760,871	+		GFF2734	0.74	-1.0
2,760,871	+		GFF2734	0.74	+0.0
2,760,881	+		GFF2734	0.74	+0.9
2,760,881	+		GFF2734	0.74	-0.3
2,760,881	+		GFF2734	0.74	+1.2
2,760,883	+		GFF2734	0.74	+0.1
2,760,883	+		GFF2734	0.74	+0.2
2,760,888	+		GFF2734	0.75	-1.2
2,760,889	-		GFF2734	0.75	-0.7
2,760,889	-		GFF2734	0.75	-0.3
2,760,889	-		GFF2734	0.75	-0.8
2,760,889	-		GFF2734	0.75	+0.2
2,760,891	-		GFF2734	0.75	-2.4
2,760,891	-		GFF2734	0.75	-0.5
2,760,891	-		GFF2734	0.75	-0.0
2,760,891	-		GFF2734	0.75	-0.8
2,760,891	-		GFF2734	0.75	-0.2
2,760,896	-		GFF2734	0.75	-2.0
2,760,945	+		GFF2734	0.79	+1.0
2,760,949	+		GFF2734	0.80	+1.0
2,760,968	+		GFF2734	0.81	+0.1
2,760,968	+		GFF2734	0.81	-0.2
2,760,976	-		GFF2734	0.82	+0.8
2,760,976	-		GFF2734	0.82	+0.4
2,760,976	-		GFF2734	0.82	-0.3
2,760,976	-		GFF2734	0.82	+0.3
2,760,976	-		GFF2734	0.82	+0.0
2,760,976	-		GFF2734	0.82	+1.5
2,760,976	-		GFF2734	0.82	+0.3
2,760,976	-		GFF2734	0.82	-0.8
2,760,976	-		GFF2734	0.82	+0.5
2,761,015	-		GFF2734	0.85	+0.4
2,761,051	+		GFF2734	0.88	-1.2
2,761,051	+		GFF2734	0.88	+0.1
2,761,051	+		GFF2734	0.88	-1.9
2,761,051	+		GFF2734	0.88	-0.4
2,761,051	+		GFF2734	0.88	-0.7
2,761,051	+		GFF2734	0.88	-0.5
2,761,051	+		GFF2734	0.88	-1.6
2,761,059	-		GFF2734	0.88	-1.1
2,761,059	-		GFF2734	0.88	-0.6
2,761,059	-		GFF2734	0.88	-0.1
2,761,059	-		GFF2734	0.88	+0.1
2,761,064	-		GFF2734	0.89	+0.2
2,761,064	-		GFF2734	0.89	-0.5
2,761,064	-		GFF2734	0.89	+1.9
2,761,068	+		GFF2734	0.89	-0.7
2,761,107	+				-0.0
2,761,156	+				-2.2
2,761,169	-				+1.4
2,761,184	+				+0.1
2,761,184	+				-0.8
2,761,184	+				-2.3
2,761,184	+				-0.3
2,761,184	+				-1.4
2,761,184	+				+0.2
2,761,184	+				-0.5
2,761,184	+				+0.6
2,761,184	+				-2.0
2,761,184	+				-3.2
2,761,184	+				+0.8
2,761,184	+				-0.3
2,761,184	+				-0.0
2,761,184	+				+0.8
2,761,184	+				-0.7
2,761,184	+				+1.1
2,761,184	+				-0.7
2,761,184	+				-2.0
2,761,184	+				-0.3
2,761,184	+				-0.8
2,761,184	+				-0.4
2,761,187	-				+0.0
2,761,192	-				+0.7
2,761,192	-				+0.0
2,761,192	-				+0.6
2,761,192	-				-0.0
2,761,192	-				+1.0
2,761,192	-				-0.2
2,761,192	-				+0.1
2,761,192	-				-0.6
2,761,192	-				+0.8
2,761,192	-				-0.7
2,761,192	-				+0.4
2,761,192	-				-0.2
2,761,192	-				-0.0
2,761,192	-				+0.6
2,761,192	-				-0.3
2,761,192	-				-1.4
2,761,192	-				+1.5
2,761,192	-				-0.7
2,761,192	-				-0.6
2,761,192	-				-0.1
2,761,192	-				-0.7
2,761,192	-				-1.4
2,761,192	-				-3.3
2,761,192	-				-2.4
2,761,215	-				-0.6
2,761,216	+				+0.7
2,761,230	+				-0.4
2,761,230	+				-0.4
2,761,230	+				-0.7
2,761,234	-				-0.1
2,761,244	+				-1.6
2,761,252	-				+1.0
2,761,267	-				-1.0
2,761,302	+				+0.9
2,761,305	+				-0.5
2,761,336	+		GFF2735	0.10	-0.7
2,761,353	+		GFF2735	0.11	+1.0
2,761,372	+		GFF2735	0.13	+0.1
2,761,372	-		GFF2735	0.13	+0.8
2,761,394	+		GFF2735	0.15	-1.5
2,761,394	+		GFF2735	0.15	-1.3
2,761,394	+		GFF2735	0.15	-0.5
2,761,394	+		GFF2735	0.15	+0.1
2,761,394	+		GFF2735	0.15	-0.6
2,761,394	+		GFF2735	0.15	-0.3
2,761,394	+		GFF2735	0.15	-1.0
2,761,402	-		GFF2735	0.15	+0.8
2,761,402	-		GFF2735	0.15	+1.0
2,761,402	-		GFF2735	0.15	+0.8
2,761,432	+		GFF2735	0.17	-0.2
2,761,440	-		GFF2735	0.18	+1.6
2,761,440	-		GFF2735	0.18	-0.3
2,761,440	-		GFF2735	0.18	-2.3
2,761,442	+		GFF2735	0.18	-0.4
2,761,480	+		GFF2735	0.21	-1.5
2,761,480	+		GFF2735	0.21	+0.7
2,761,480	+		GFF2735	0.21	-1.4
2,761,480	+		GFF2735	0.21	-0.5
2,761,488	-		GFF2735	0.22	+0.3
2,761,488	-		GFF2735	0.22	-1.8
2,761,488	-		GFF2735	0.22	-0.7
2,761,488	-		GFF2735	0.22	-1.1
2,761,488	-		GFF2735	0.22	-0.9
2,761,488	-		GFF2735	0.22	-1.5
2,761,488	-		GFF2735	0.22	+0.4
2,761,490	+		GFF2735	0.22	-0.5
2,761,493	-		GFF2735	0.22	-0.5
2,761,499	+		GFF2735	0.22	-0.4
2,761,499	+		GFF2735	0.22	-0.0
2,761,499	+		GFF2735	0.22	-0.5
2,761,502	-		GFF2735	0.23	+0.2
2,761,502	-		GFF2735	0.23	-0.7
2,761,506	+		GFF2735	0.23	-0.5
2,761,507	-		GFF2735	0.23	-1.3
2,761,521	+		GFF2735	0.24	+1.2
2,761,521	+		GFF2735	0.24	-0.4
2,761,529	-		GFF2735	0.25	-0.4
2,761,540	+		GFF2735	0.25	-2.4
2,761,542	+		GFF2735	0.26	-0.2
2,761,548	+		GFF2735	0.26	+0.8
2,761,548	-		GFF2735	0.26	+1.3
2,761,556	-		GFF2735	0.27	+0.7
2,761,566	+		GFF2735	0.27	+1.0
2,761,569	-		GFF2735	0.28	+0.1
2,761,644	-		GFF2735	0.33	+0.5
2,761,658	-		GFF2735	0.34	+1.1
2,761,686	-		GFF2735	0.36	-2.5
2,761,686	-		GFF2735	0.36	+0.6
2,761,690	+		GFF2735	0.37	+0.8
2,761,690	+		GFF2735	0.37	+1.0
2,761,698	-		GFF2735	0.37	+0.2
2,761,700	+		GFF2735	0.37	+0.8
2,761,708	-		GFF2735	0.38	+0.4
2,761,732	+		GFF2735	0.40	-0.8
2,761,732	+		GFF2735	0.40	+0.4
2,761,734	+		GFF2735	0.40	-0.6
2,761,735	-		GFF2735	0.40	+2.1
2,761,740	-		GFF2735	0.40	+0.3
2,761,750	-		GFF2735	0.41	+0.0
2,761,750	-		GFF2735	0.41	-1.0
2,761,750	-		GFF2735	0.41	-1.3
2,761,769	+		GFF2735	0.43	-1.6
2,761,773	-		GFF2735	0.43	+0.2
2,761,777	-		GFF2735	0.43	+0.4
2,761,777	-		GFF2735	0.43	-0.2
2,761,780	+		GFF2735	0.43	-1.3
2,761,780	+		GFF2735	0.43	-0.7
2,761,788	-		GFF2735	0.44	-1.2
2,761,793	-		GFF2735	0.44	-0.3
2,761,842	+		GFF2735	0.48	-1.0
2,761,850	-		GFF2735	0.49	-0.3
2,761,850	-		GFF2735	0.49	-0.8
2,761,865	+		GFF2735	0.50	+0.5
2,761,885	-		GFF2735	0.51	-2.2
2,761,908	-		GFF2735	0.53	-0.0
2,761,911	+		GFF2735	0.53	-0.1
2,761,919	-		GFF2735	0.54	-1.5
2,761,919	-		GFF2735	0.54	+0.1
2,761,919	-		GFF2735	0.54	-1.2
2,761,945	-		GFF2735	0.56	-0.6
2,761,946	+		GFF2735	0.56	+0.2
2,761,948	+		GFF2735	0.56	+0.4
2,761,948	+		GFF2735	0.56	-1.5
2,761,948	+		GFF2735	0.56	-0.7
2,761,948	+		GFF2735	0.56	-1.1
2,761,949	-		GFF2735	0.56	-1.1
2,761,956	-		GFF2735	0.57	+1.2
2,761,977	-		GFF2735	0.58	-2.6
2,761,977	-		GFF2735	0.58	-1.3
2,761,979	-		GFF2735	0.58	-0.2
2,761,990	+		GFF2735	0.59	-1.1
2,762,000	+		GFF2735	0.60	-0.1
2,762,003	-		GFF2735	0.60	-0.4
2,762,016	-		GFF2735	0.61	+0.8
2,762,017	+		GFF2735	0.61	-1.4
2,762,050	+		GFF2735	0.64	-1.2
2,762,075	+		GFF2735	0.66	-0.0
2,762,106	+		GFF2735	0.68	-1.3
2,762,114	-		GFF2735	0.68	+0.3
2,762,119	-		GFF2735	0.69	-1.1
2,762,120	-		GFF2735	0.69	+0.1
2,762,130	+		GFF2735	0.70	+0.6
2,762,130	+		GFF2735	0.70	-0.1
2,762,130	+		GFF2735	0.70	+0.5
2,762,130	+		GFF2735	0.70	-0.6
2,762,130	+		GFF2735	0.70	-1.7
2,762,130	+		GFF2735	0.70	+0.5
2,762,130	+		GFF2735	0.70	-0.7
2,762,130	+		GFF2735	0.70	-0.4
2,762,130	+		GFF2735	0.70	-0.5
2,762,130	+		GFF2735	0.70	-1.5
2,762,130	+		GFF2735	0.70	+0.4
2,762,130	+		GFF2735	0.70	-1.6
2,762,130	+		GFF2735	0.70	+0.6
2,762,130	+		GFF2735	0.70	+0.2
2,762,130	+		GFF2735	0.70	+0.1
2,762,138	-		GFF2735	0.70	-0.2
2,762,138	-		GFF2735	0.70	-2.5
2,762,138	-		GFF2735	0.70	-1.4
2,762,138	-		GFF2735	0.70	-0.5
2,762,138	-		GFF2735	0.70	-0.5
2,762,138	-		GFF2735	0.70	+0.4
2,762,138	-		GFF2735	0.70	-0.2
2,762,138	-		GFF2735	0.70	+1.0
2,762,138	-		GFF2735	0.70	+1.5
2,762,138	-		GFF2735	0.70	-1.5
2,762,138	-		GFF2735	0.70	-1.0
2,762,138	-		GFF2735	0.70	+0.5
2,762,138	-		GFF2735	0.70	+1.7
2,762,138	-		GFF2735	0.70	+1.0
2,762,138	-		GFF2735	0.70	-1.5
2,762,138	-		GFF2735	0.70	-0.7
2,762,138	-		GFF2735	0.70	+0.1
2,762,138	-		GFF2735	0.70	+0.9
2,762,138	-		GFF2735	0.70	-0.2
2,762,149	+		GFF2735	0.71	-0.7
2,762,157	-		GFF2735	0.72	-1.4
2,762,157	-		GFF2735	0.72	-0.6
2,762,157	-		GFF2735	0.72	-1.7
2,762,157	-		GFF2735	0.72	-0.7
2,762,159	+		GFF2735	0.72	-1.1
2,762,159	-		GFF2735	0.72	+0.4
2,762,178	-		GFF2735	0.73	-2.2
2,762,191	+		GFF2735	0.74	-0.1
2,762,239	-		GFF2735	0.78	-0.8
2,762,239	-		GFF2735	0.78	-1.0
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