Strain Fitness in Sphingobium sp. HT1-2 around GFF2647

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,665,830	+				-0.4
2,665,830	+				-2.3
2,665,830	+				-0.4
2,665,830	+				+0.3
2,665,831	+				-0.4
2,665,831	+				+0.3
2,665,831	+				+1.3
2,665,831	+				-1.4
2,665,831	+				-0.6
2,665,831	+				+0.5
2,665,831	+				-1.0
2,665,831	+				-0.2
2,665,833	-				-0.6
2,665,833	-				+0.4
2,665,833	-				+0.3
2,665,836	+				-0.5
2,665,836	+				-0.0
2,665,836	+				-0.1
2,665,836	+				+0.6
2,665,836	+				-0.8
2,665,839	-				-1.7
2,665,839	-				+0.4
2,665,839	-				+0.0
2,665,839	-				+2.0
2,665,839	-				-0.3
2,665,839	-				+1.0
2,665,839	-				-2.2
2,665,839	-				-1.0
2,665,844	-				-0.3
2,665,844	-				+0.7
2,665,844	-				+0.0
2,665,844	-				+0.6
2,665,844	-				-0.5
2,665,844	-				-0.9
2,665,844	-				+0.3
2,665,844	-				+0.7
2,665,847	+				+0.8
2,665,868	-				-1.5
2,665,868	-				-1.8
2,665,915	+				-1.3
2,665,915	+				+0.3
2,665,917	+				-1.7
2,665,917	+				-1.6
2,665,923	-				-1.0
2,665,923	-				-0.4
2,665,923	-				+0.6
2,665,937	+				-0.4
2,665,937	+				+1.1
2,665,937	+				-0.1
2,665,945	-		GFF2646	0.10	+0.7
2,665,945	-		GFF2646	0.10	-0.7
2,665,945	-		GFF2646	0.10	-0.8
2,665,951	-		GFF2646	0.11	+0.7
2,665,951	-		GFF2646	0.11	+0.5
2,665,951	-		GFF2646	0.11	-1.3
2,666,009	+		GFF2646	0.17	-0.1
2,666,037	+		GFF2646	0.19	-2.1
2,666,046	+		GFF2646	0.20	+0.1
2,666,082	-		GFF2646	0.24	-0.0
2,666,085	+		GFF2646	0.24	-0.5
2,666,090	+		GFF2646	0.25	-0.7
2,666,098	-		GFF2646	0.26	+0.3
2,666,114	+		GFF2646	0.27	-0.0
2,666,117	-		GFF2646	0.28	-1.6
2,666,148	-		GFF2646	0.31	+0.8
2,666,151	+		GFF2646	0.31	-1.6
2,666,160	-		GFF2646	0.32	-1.5
2,666,176	+		GFF2646	0.34	+0.9
2,666,200	-		GFF2646	0.36	-0.3
2,666,206	+		GFF2646	0.37	-1.4
2,666,209	-		GFF2646	0.37	+0.1
2,666,216	-		GFF2646	0.38	-1.9
2,666,224	+		GFF2646	0.38	-1.8
2,666,224	-		GFF2646	0.38	-0.3
2,666,225	-		GFF2646	0.38	-1.8
2,666,225	-		GFF2646	0.38	-0.3
2,666,225	-		GFF2646	0.38	+0.0
2,666,225	-		GFF2646	0.38	+0.8
2,666,226	+		GFF2646	0.39	-1.4
2,666,237	-		GFF2646	0.40	+0.2
2,666,242	-		GFF2646	0.40	-0.1
2,666,261	-		GFF2646	0.42	+0.3
2,666,263	-		GFF2646	0.42	-2.7
2,666,263	-		GFF2646	0.42	-0.2
2,666,292	+		GFF2646	0.45	+0.4
2,666,300	-		GFF2646	0.46	+0.2
2,666,300	-		GFF2646	0.46	-0.1
2,666,315	-		GFF2646	0.48	-0.1
2,666,317	+		GFF2646	0.48	+1.0
2,666,322	+		GFF2646	0.48	-1.0
2,666,322	+		GFF2646	0.48	-0.5
2,666,322	+		GFF2646	0.48	-0.7
2,666,322	+		GFF2646	0.48	-2.1
2,666,322	+		GFF2646	0.48	-0.4
2,666,322	+		GFF2646	0.48	-0.5
2,666,330	-		GFF2646	0.49	-1.3
2,666,349	+		GFF2646	0.51	-0.3
2,666,355	+		GFF2646	0.52	+0.7
2,666,365	-		GFF2646	0.53	+0.9
2,666,413	+		GFF2646	0.57	+0.1
2,666,416	-		GFF2646	0.58	-0.9
2,666,418	+		GFF2646	0.58	+0.1
2,666,418	+		GFF2646	0.58	+0.3
2,666,418	+		GFF2646	0.58	+1.4
2,666,418	+		GFF2646	0.58	+0.3
2,666,418	+		GFF2646	0.58	+0.3
2,666,418	+		GFF2646	0.58	-0.3
2,666,418	+		GFF2646	0.58	-1.4
2,666,421	-		GFF2646	0.58	+0.7
2,666,421	-		GFF2646	0.58	+1.4
2,666,421	-		GFF2646	0.58	-1.2
2,666,421	-		GFF2646	0.58	-0.2
2,666,426	-		GFF2646	0.59	-0.4
2,666,426	-		GFF2646	0.59	+0.8
2,666,426	-		GFF2646	0.59	+1.0
2,666,426	-		GFF2646	0.59	+0.0
2,666,426	-		GFF2646	0.59	+0.1
2,666,426	-		GFF2646	0.59	+0.4
2,666,427	-		GFF2646	0.59	-0.3
2,666,428	+		GFF2646	0.59	-0.7
2,666,429	+		GFF2646	0.59	-0.1
2,666,436	-		GFF2646	0.60	+0.5
2,666,436	-		GFF2646	0.60	+0.7
2,666,447	-		GFF2646	0.61	-1.0
2,666,449	+		GFF2646	0.61	+0.6
2,666,490	-		GFF2646	0.65	+0.7
2,666,513	+		GFF2646	0.68	-1.5
2,666,548	-		GFF2646	0.71	-0.3
2,666,553	+		GFF2646	0.72	+0.1
2,666,553	+		GFF2646	0.72	-0.7
2,666,553	+		GFF2646	0.72	+0.3
2,666,555	-		GFF2646	0.72	+0.7
2,666,561	-		GFF2646	0.72	-1.7
2,666,561	-		GFF2646	0.72	-1.2
2,666,573	-		GFF2646	0.74	+0.8
2,666,600	+		GFF2646	0.76	+1.9
2,666,665	+		GFF2646	0.83	+1.2
2,666,689	+		GFF2646	0.85	+0.5
2,666,692	-		GFF2646	0.86	+0.8
2,666,697	-		GFF2646	0.86	-2.3
2,666,712	-		GFF2646	0.88	-0.3
2,666,712	-		GFF2646	0.88	-0.4
2,666,718	+		GFF2646	0.88	+0.4
2,666,736	+				-0.6
2,666,744	-				-0.7
2,666,755	+				+0.4
2,666,758	-				+0.6
2,666,759	+				+1.0
2,666,759	+				-1.2
2,666,759	+				-1.0
2,666,759	+				-0.1
2,666,763	-				+0.3
2,666,767	-				-1.1
2,666,767	-				+0.3
2,666,767	-				+0.7
2,666,769	+				+0.6
2,666,782	-				+0.3
2,666,791	+				-1.1
2,666,801	+				+0.1
2,666,801	+				-0.4
2,666,801	+				-1.0
2,666,808	+				+0.5
2,666,808	+				+0.4
2,666,808	+				-1.8
2,666,808	+				-2.3
2,666,808	+				-0.5
2,666,809	-				+0.8
2,666,816	-				-0.2
2,666,816	-				-1.1
2,666,816	-				-0.7
2,666,816	-				+0.8
2,666,816	-				+0.5
2,666,831	+				-0.2
2,666,831	+				-0.6
2,666,831	+				-1.3
2,666,851	+				+0.2
2,666,854	+				-0.1
2,666,860	-				+0.8
2,666,860	-				-1.3
2,666,860	-				-0.3
2,666,882	-				-2.7
2,666,923	+		GFF2647	0.11	+0.3
2,666,936	+		GFF2647	0.12	-1.5
2,666,945	+		GFF2647	0.13	-0.1
2,666,945	+		GFF2647	0.13	-0.3
2,666,953	-		GFF2647	0.14	-0.2
2,666,953	-		GFF2647	0.14	+0.6
2,666,953	-		GFF2647	0.14	+0.3
2,666,960	+		GFF2647	0.15	-0.4
2,666,975	+		GFF2647	0.17	-0.3
2,666,980	+		GFF2647	0.17	-0.5
2,666,980	+		GFF2647	0.17	-0.1
2,666,988	-		GFF2647	0.18	+0.4
2,666,989	+		GFF2647	0.18	+1.1
2,666,995	+		GFF2647	0.19	-0.5
2,666,997	+		GFF2647	0.19	+0.1
2,667,000	+		GFF2647	0.20	+0.5
2,667,003	-		GFF2647	0.20	-0.0
2,667,008	-		GFF2647	0.21	+1.2
2,667,087	-		GFF2647	0.30	-0.5
2,667,119	+		GFF2647	0.33	-0.9
2,667,126	-		GFF2647	0.34	-0.5
2,667,133	-		GFF2647	0.35	-2.1
2,667,137	+		GFF2647	0.36	-0.4
2,667,145	-		GFF2647	0.36	+1.0
2,667,149	+		GFF2647	0.37	+0.3
2,667,172	-		GFF2647	0.40	+0.8
2,667,172	-		GFF2647	0.40	+0.9
2,667,194	+		GFF2647	0.42	-0.2
2,667,199	+		GFF2647	0.43	+1.0
2,667,226	+		GFF2647	0.46	+1.2
2,667,231	+		GFF2647	0.46	-0.2
2,667,234	-		GFF2647	0.47	-2.6
2,667,234	-		GFF2647	0.47	+0.4
2,667,234	-		GFF2647	0.47	+0.3
2,667,234	-		GFF2647	0.47	-0.8
2,667,234	-		GFF2647	0.47	+0.7
2,667,239	+		GFF2647	0.47	-0.5
2,667,248	+		GFF2647	0.48	-2.3
2,667,256	-		GFF2647	0.49	+0.3
2,667,258	+		GFF2647	0.50	+0.2
2,667,266	-		GFF2647	0.50	-0.5
2,667,266	-		GFF2647	0.50	+0.4
2,667,276	+		GFF2647	0.52	-1.2
2,667,287	-		GFF2647	0.53	+1.6
2,667,351	+		GFF2647	0.60	-0.6
2,667,366	+		GFF2647	0.62	+0.2
2,667,385	+		GFF2647	0.64	+0.1
2,667,393	-		GFF2647	0.65	-1.2
2,667,401	+		GFF2647	0.66	-0.6
2,667,414	-		GFF2647	0.68	-0.8
2,667,423	+		GFF2647	0.69	-0.3
2,667,431	-		GFF2647	0.70	-0.3
2,667,452	+		GFF2647	0.72	-1.6
2,667,460	-		GFF2647	0.73	-1.2
2,667,464	-		GFF2647	0.73	-0.7
2,667,466	+		GFF2647	0.74	-0.1
2,667,474	-		GFF2647	0.75	+1.4
2,667,486	+		GFF2647	0.76	+0.3
2,667,486	+		GFF2647	0.76	+0.8
2,667,486	+		GFF2647	0.76	+1.0
2,667,486	+		GFF2647	0.76	+0.7
2,667,489	-		GFF2647	0.76	-0.7
2,667,489	-		GFF2647	0.76	-0.3
2,667,489	-		GFF2647	0.76	-0.8
2,667,494	-		GFF2647	0.77	-1.4
2,667,494	-		GFF2647	0.77	+0.4
2,667,516	+		GFF2647	0.79	+0.2
2,667,524	-		GFF2647	0.80	-0.3
2,667,524	-		GFF2647	0.80	-0.1
2,667,524	-		GFF2647	0.80	+0.6
2,667,524	-		GFF2647	0.80	-0.8
2,667,524	-		GFF2647	0.80	-0.4
2,667,524	-		GFF2647	0.80	+0.0
2,667,526	+		GFF2647	0.81	+0.1
2,667,526	+		GFF2647	0.81	+1.2
2,667,526	+		GFF2647	0.81	+1.7
2,667,531	+		GFF2647	0.81	+0.3
2,667,534	-		GFF2647	0.81	-0.2
2,667,534	-		GFF2647	0.81	+0.8
2,667,534	-		GFF2647	0.81	+0.3
2,667,534	-		GFF2647	0.81	-1.4
2,667,534	-		GFF2647	0.81	-0.2
2,667,534	-		GFF2647	0.81	+0.1
2,667,534	-		GFF2647	0.81	-2.1
2,667,536	+		GFF2647	0.82	-0.2
2,667,539	-		GFF2647	0.82	+1.3
2,667,539	-		GFF2647	0.82	+0.1
2,667,539	-		GFF2647	0.82	-0.1
2,667,539	-		GFF2647	0.82	-0.7
2,667,539	-		GFF2647	0.82	+1.3
2,667,539	-		GFF2647	0.82	+0.3
2,667,544	-		GFF2647	0.83	-0.6
2,667,544	-		GFF2647	0.83	-1.6
2,667,544	-		GFF2647	0.83	-0.7
2,667,549	-		GFF2647	0.83	+0.5
2,667,607	-				-1.7
2,667,608	+				+0.1
2,667,608	+				-0.4
2,667,616	-				+0.2
2,667,618	-				-0.7
2,667,628	-				-0.9
2,667,636	+				+0.3
2,667,637	+				-0.1
2,667,637	+				+0.8
2,667,670	+				+0.9
2,667,675	+				+1.1
2,667,675	+				-0.5
2,667,675	+				+0.1
2,667,675	+				+0.8
2,667,675	+				-0.6
2,667,675	+				-0.2
2,667,675	+				-1.2
2,667,675	+				-0.3
2,667,675	+				+1.3
2,667,681	+				+1.6
2,667,682	+				-0.3
2,667,682	+				+1.0
2,667,683	-				-0.5
2,667,683	-				-0.4
2,667,683	-				-0.7
2,667,683	-				-0.5
2,667,683	-				+0.8
2,667,683	-				+0.7
2,667,683	-				-0.5
2,667,683	-				-0.1
2,667,683	-				-0.6
2,667,683	-				+1.0
2,667,683	-				-0.2
2,667,683	-				-0.6
2,667,683	-				-1.8
2,667,683	-				-2.0
2,667,685	+				+0.0
2,667,687	+				+0.8
2,667,688	-				-0.3
2,667,705	-				-0.1
2,667,706	+				-1.3
2,667,706	+				+0.6
2,667,706	+				-0.6
2,667,714	-				-0.4
2,667,716	+				-0.4
2,667,724	-		GFF2648	0.12	-0.4
2,667,765	+		GFF2648	0.26	-0.8
2,667,772	+		GFF2648	0.29	-0.1
2,667,772	+		GFF2648	0.29	-1.5
2,667,772	+		GFF2648	0.29	-1.5
2,667,777	+		GFF2648	0.31	+0.4
2,667,777	+		GFF2648	0.31	+0.2
2,667,780	-		GFF2648	0.32	+0.8
2,667,780	-		GFF2648	0.32	+1.1
2,667,780	-		GFF2648	0.32	-0.7
2,667,780	-		GFF2648	0.32	+0.4
2,667,785	-		GFF2648	0.33	+0.0
2,667,790	-		GFF2648	0.35	-0.5
2,667,795	+		GFF2648	0.37	+0.4
2,667,813	+		GFF2648	0.43	-0.6
2,667,846	+		GFF2648	0.55	-0.3
2,667,854	-		GFF2648	0.58	-2.9
2,667,854	-		GFF2648	0.58	-1.4
2,667,854	-		GFF2648	0.58	+0.1
2,667,856	+		GFF2648	0.58	-0.3
2,667,856	+		GFF2648	0.58	+0.6
2,667,856	+		GFF2648	0.58	+0.3
2,667,866	+		GFF2648	0.62	-0.3
2,667,866	+		GFF2648	0.62	-0.4
2,667,873	+		GFF2648	0.64	+0.6
2,667,873	+		GFF2648	0.64	+1.3
2,667,873	+		GFF2648	0.64	+1.3
2,667,873	+		GFF2648	0.64	+0.0
2,667,873	+		GFF2648	0.64	-0.7
2,667,873	+		GFF2648	0.64	+1.2
2,667,873	+		GFF2648	0.64	+0.2
2,667,873	+		GFF2648	0.64	+1.4
2,667,873	+		GFF2648	0.64	-0.7
2,667,874	-		GFF2648	0.65	-1.9
2,667,874	-		GFF2648	0.65	-0.4
2,667,874	-		GFF2648	0.65	-0.3
2,667,881	-		GFF2648	0.67	-0.5
2,667,881	-		GFF2648	0.67	+0.4
2,667,881	-		GFF2648	0.67	-0.1
2,667,881	-		GFF2648	0.67	-0.9
2,667,881	-		GFF2648	0.67	+0.6
2,667,886	-		GFF2648	0.69	-0.0
2,667,887	+		GFF2648	0.69	+0.4
2,667,887	+		GFF2648	0.69	-0.7
2,667,887	+		GFF2648	0.69	+1.5
2,667,887	+		GFF2648	0.69	-0.3
2,667,892	+		GFF2648	0.71	-0.6
2,667,895	-		GFF2648	0.72	-0.7
2,667,902	+		GFF2648	0.74	-0.4
2,667,905	-		GFF2648	0.75	+0.4
2,667,915	-		GFF2648	0.79	-1.7
2,667,915	-		GFF2648	0.79	-0.2
2,667,928	-		GFF2648	0.84	-0.3
2,667,935	+		GFF2648	0.86	+0.9
2,667,935	+		GFF2648	0.86	+0.1
2,667,944	+		GFF2648	0.89	-2.1
2,667,947	-				+0.3
2,667,967	-				-0.1
2,667,967	-				+0.8
2,667,986	+				-1.4
2,667,988	+				+0.4
2,668,006	-				+0.3
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