Strain Fitness in Sphingobium sp. HT1-2 around GFF2628

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,646,026	-		GFF2625	0.18	-0.6
2,646,069	+		GFF2625	0.31	-1.1
2,646,074	+		GFF2625	0.32	+0.4
2,646,181	-		GFF2625	0.65	-1.3
2,646,247	-		GFF2625	0.84	-1.2
2,646,288	+				-1.5
2,646,315	-				+0.7
2,646,315	-				-0.5
2,646,315	-				-2.0
2,646,315	-				-0.5
2,646,342	+				-0.1
2,646,366	+				-0.1
2,646,376	+				+0.2
2,646,386	+				-1.4
2,646,386	+				-0.1
2,646,386	+				-0.7
2,646,394	+		GFF2626	0.13	+0.1
2,646,394	-		GFF2626	0.13	+0.5
2,646,402	-		GFF2626	0.17	+0.7
2,646,402	-		GFF2626	0.17	+0.2
2,646,408	+		GFF2626	0.19	+0.1
2,646,414	-		GFF2626	0.22	-0.5
2,646,420	+		GFF2626	0.24	-0.0
2,646,420	+		GFF2626	0.24	-1.1
2,646,423	-		GFF2626	0.26	+0.8
2,646,428	-		GFF2626	0.28	-2.4
2,646,444	+		GFF2626	0.35	-1.8
2,646,444	+		GFF2626	0.35	+0.6
2,646,444	+		GFF2626	0.35	+0.5
2,646,452	-		GFF2626	0.38	+0.1
2,646,454	+		GFF2626	0.39	+0.2
2,646,454	+		GFF2626	0.39	-0.2
2,646,458	+		GFF2626	0.41	+0.7
2,646,459	+		GFF2626	0.41	+0.6
2,646,462	-		GFF2626	0.42	-0.2
2,646,481	+		GFF2626	0.50	-1.1
2,646,529	+		GFF2626	0.71	+0.1
2,646,537	-		GFF2626	0.74	+0.3
2,646,547	-		GFF2626	0.79	-1.6
2,646,556	+		GFF2626	0.82	-0.8
2,646,556	+		GFF2626	0.82	+0.7
2,646,558	+		GFF2626	0.83	+0.0
2,646,564	-		GFF2626	0.86	+0.3
2,646,564	-		GFF2626	0.86	+0.4
2,646,577	-				-1.0
2,646,586	+				+0.2
2,646,594	-				+0.6
2,646,601	+				+1.2
2,646,615	-				+0.7
2,646,615	-				-0.8
2,646,615	-				-0.0
2,646,615	-				+0.5
2,646,620	-				-1.0
2,646,675	-		GFF2627	0.20	+1.1
2,646,684	-		GFF2627	0.23	-0.6
2,646,702	+		GFF2627	0.28	+1.0
2,646,710	-		GFF2627	0.31	-0.1
2,646,710	-		GFF2627	0.31	-0.3
2,646,712	+		GFF2627	0.31	+0.4
2,646,715	-		GFF2627	0.32	-1.2
2,646,720	-		GFF2627	0.34	-0.7
2,646,728	-		GFF2627	0.36	-0.5
2,646,773	+		GFF2627	0.50	-1.5
2,646,773	-		GFF2627	0.50	-1.0
2,646,773	-		GFF2627	0.50	+1.7
2,646,781	-		GFF2627	0.53	+0.1
2,646,784	+		GFF2627	0.54	+0.0
2,646,792	-		GFF2627	0.56	+0.3
2,646,795	+		GFF2627	0.57	-0.5
2,646,802	+		GFF2627	0.59	-0.1
2,646,803	-		GFF2627	0.60	+0.8
2,646,810	-		GFF2627	0.62	-1.4
2,646,810	-		GFF2627	0.62	-1.5
2,646,810	-		GFF2627	0.62	-0.8
2,646,810	-		GFF2627	0.62	-1.2
2,646,810	-		GFF2627	0.62	-1.2
2,646,882	-		GFF2627	0.84	+1.2
2,646,926	-				+1.2
2,646,926	-				-2.1
2,646,934	-				-0.8
2,646,944	-				-0.9
2,646,946	+				+0.3
2,646,954	-				+1.4
2,646,954	-				-1.6
2,646,978	-				-1.3
2,646,989	-				+1.5
2,646,996	-				-0.1
2,647,005	+				+0.7
2,647,008	-				-0.6
2,647,025	+				-1.2
2,647,033	-				+1.0
2,647,038	+				-1.2
2,647,051	+		GFF2628	0.10	-2.5
2,647,056	+		GFF2628	0.11	-3.1
2,647,059	-		GFF2628	0.11	+1.8
2,647,064	-		GFF2628	0.12	-2.8
2,647,064	-		GFF2628	0.12	-1.2
2,647,064	-		GFF2628	0.12	-1.4
2,647,065	+		GFF2628	0.12	-2.3
2,647,071	+		GFF2628	0.13	+0.1
2,647,071	+		GFF2628	0.13	-1.7
2,647,071	+		GFF2628	0.13	-1.7
2,647,072	+		GFF2628	0.14	-0.8
2,647,079	-		GFF2628	0.15	-2.1
2,647,079	-		GFF2628	0.15	-1.9
2,647,079	-		GFF2628	0.15	-1.6
2,647,079	-		GFF2628	0.15	-1.9
2,647,080	-		GFF2628	0.15	-2.2
2,647,094	-		GFF2628	0.17	-1.9
2,647,094	-		GFF2628	0.17	-2.5
2,647,094	-		GFF2628	0.17	-1.2
2,647,094	-		GFF2628	0.17	-1.9
2,647,101	+		GFF2628	0.19	-2.5
2,647,102	-		GFF2628	0.19	-1.9
2,647,104	+		GFF2628	0.19	+0.2
2,647,112	-		GFF2628	0.20	-2.4
2,647,112	-		GFF2628	0.20	-2.0
2,647,135	+		GFF2628	0.24	-2.9
2,647,152	-		GFF2628	0.27	-0.6
2,647,199	+		GFF2628	0.35	-2.1
2,647,202	-		GFF2628	0.36	-2.6
2,647,208	+		GFF2628	0.37	-1.5
2,647,212	+		GFF2628	0.37	-2.8
2,647,226	+		GFF2628	0.40	-1.7
2,647,243	+		GFF2628	0.42	-2.0
2,647,252	+		GFF2628	0.44	-2.3
2,647,272	-		GFF2628	0.47	-2.3
2,647,300	-		GFF2628	0.52	-1.8
2,647,307	+		GFF2628	0.53	-3.2
2,647,342	+		GFF2628	0.59	-3.1
2,647,358	-		GFF2628	0.62	-0.9
2,647,358	-		GFF2628	0.62	-2.3
2,647,358	-		GFF2628	0.62	-1.6
2,647,358	-		GFF2628	0.62	+0.3
2,647,358	-		GFF2628	0.62	-2.4
2,647,392	+		GFF2628	0.68	-2.6
2,647,400	-		GFF2628	0.69	-2.0
2,647,400	-		GFF2628	0.69	-1.2
2,647,420	+		GFF2628	0.72	-1.3
2,647,432	+		GFF2628	0.74	-2.8
2,647,439	+		GFF2628	0.75	-1.0
2,647,439	+		GFF2628	0.75	-2.8
2,647,439	+		GFF2628	0.75	-2.1
2,647,440	-		GFF2628	0.76	-1.7
2,647,440	-		GFF2628	0.76	-0.4
2,647,460	-		GFF2628	0.79	-3.3
2,647,460	-		GFF2628	0.79	-1.9
2,647,463	+		GFF2628	0.79	-1.7
2,647,465	-		GFF2628	0.80	-2.8
2,647,468	+		GFF2628	0.80	-1.3
2,647,468	+		GFF2628	0.80	-2.2
2,647,471	-		GFF2628	0.81	-1.8
2,647,475	-		GFF2628	0.81	-1.2
2,647,489	-		GFF2628	0.84	-1.8
2,647,516	-		GFF2628	0.88	-1.1
2,647,529	+				-2.5
2,647,547	+				-2.0
2,647,547	+				-0.2
2,647,547	+				-1.8
2,647,554	-				+0.2
2,647,555	-				-1.6
2,647,566	-				-1.5
2,647,574	+				+0.1
2,647,579	+				-0.5
2,647,579	+				-0.9
2,647,579	+				-0.4
2,647,587	-				+0.5
2,647,587	-				+1.2
2,647,587	-				-1.8
2,647,602	-		GFF2629	0.16	-0.2
2,647,607	+		GFF2629	0.20	-2.3
2,647,607	+		GFF2629	0.20	-0.1
2,647,607	+		GFF2629	0.20	-0.9
2,647,607	+		GFF2629	0.20	-3.6
2,647,607	+		GFF2629	0.20	-0.1
2,647,612	+		GFF2629	0.25	-0.6
2,647,615	-		GFF2629	0.27	-0.7
2,647,615	-		GFF2629	0.27	-0.3
2,647,615	-		GFF2629	0.27	+1.8
2,647,615	-		GFF2629	0.27	-1.2
2,647,619	+		GFF2629	0.31	-1.8
2,647,619	+		GFF2629	0.31	-2.4
2,647,620	-		GFF2629	0.32	-0.8
2,647,622	-		GFF2629	0.33	-0.7
2,647,642	-		GFF2629	0.51	+0.7
2,647,646	+		GFF2629	0.54	+0.1
2,647,651	+		GFF2629	0.59	-1.8
2,647,654	-		GFF2629	0.61	-0.3
2,647,656	+		GFF2629	0.63	-1.8
2,647,659	-		GFF2629	0.66	+0.9
2,647,659	-		GFF2629	0.66	-0.1
2,647,659	-		GFF2629	0.66	+0.4
2,647,659	-		GFF2629	0.66	-0.1
2,647,659	-		GFF2629	0.66	-0.6
2,647,664	-		GFF2629	0.70	-0.4
2,647,679	-		GFF2629	0.83	-2.7
2,647,784	+				-0.5
2,647,784	+				-1.7
2,647,792	-				-3.5
2,647,792	-				-3.0
2,647,792	-				-3.2
2,647,792	-				-0.5
2,647,792	-				-2.7
2,647,792	-				-1.8
2,647,803	+				-1.8
2,647,809	-				+1.0
2,647,867	-		GFF2630	0.12	-1.7
2,647,867	-		GFF2630	0.12	-1.2
2,647,870	+		GFF2630	0.12	-2.5
2,647,871	+		GFF2630	0.12	-1.9
2,647,879	-		GFF2630	0.13	-1.0
2,647,885	-		GFF2630	0.13	-1.8
2,647,890	-		GFF2630	0.13	-2.3
2,647,894	+		GFF2630	0.14	-2.5
2,647,899	-		GFF2630	0.14	-1.7
2,647,905	+		GFF2630	0.15	-1.3
2,647,923	-		GFF2630	0.16	-0.0
2,647,942	+		GFF2630	0.17	-2.1
2,647,943	+		GFF2630	0.17	-2.3
2,647,943	+		GFF2630	0.17	-1.1
2,647,951	-		GFF2630	0.18	-2.1
2,647,951	-		GFF2630	0.18	-2.1
2,647,964	-		GFF2630	0.19	-1.2
2,647,968	+		GFF2630	0.19	-1.1
2,647,970	-		GFF2630	0.19	-0.7
2,647,975	-		GFF2630	0.19	-1.8
2,647,976	-		GFF2630	0.19	-2.2
2,647,976	-		GFF2630	0.19	-2.2
2,647,976	-		GFF2630	0.19	-1.4
2,647,978	+		GFF2630	0.20	-2.6
2,647,978	+		GFF2630	0.20	-3.1
2,647,981	-		GFF2630	0.20	-1.3
2,647,986	-		GFF2630	0.20	-2.1
2,647,986	-		GFF2630	0.20	-0.8
2,647,986	-		GFF2630	0.20	-1.9
2,648,003	-		GFF2630	0.21	-1.1
2,648,003	-		GFF2630	0.21	-2.7
2,648,007	-		GFF2630	0.22	-1.6
2,648,031	+		GFF2630	0.23	-0.4
2,648,031	+		GFF2630	0.23	-2.1
2,648,031	+		GFF2630	0.23	-1.6
2,648,031	+		GFF2630	0.23	-2.8
2,648,032	-		GFF2630	0.23	-1.2
2,648,033	+		GFF2630	0.23	-2.6
2,648,039	-		GFF2630	0.24	-3.6
2,648,039	-		GFF2630	0.24	-2.4
2,648,039	-		GFF2630	0.24	-2.2
2,648,061	+		GFF2630	0.25	-1.6
2,648,062	-		GFF2630	0.25	-2.1
2,648,123	+		GFF2630	0.30	-3.3
2,648,140	+		GFF2630	0.31	-2.1
2,648,140	+		GFF2630	0.31	-2.0
2,648,140	+		GFF2630	0.31	-1.5
2,648,140	+		GFF2630	0.31	-1.3
2,648,140	+		GFF2630	0.31	-1.9
2,648,140	+		GFF2630	0.31	-2.6
2,648,140	+		GFF2630	0.31	-3.1
2,648,148	-		GFF2630	0.31	-2.0
2,648,148	-		GFF2630	0.31	-1.8
2,648,148	-		GFF2630	0.31	-1.0
2,648,148	-		GFF2630	0.31	-2.3
2,648,148	-		GFF2630	0.31	-1.9
2,648,148	-		GFF2630	0.31	-1.9
2,648,148	-		GFF2630	0.31	-1.6
2,648,196	-		GFF2630	0.35	+0.3
2,648,236	+		GFF2630	0.37	-1.5
2,648,244	-		GFF2630	0.38	-2.3
2,648,244	-		GFF2630	0.38	-2.2
2,648,258	-		GFF2630	0.39	-3.4
2,648,278	-		GFF2630	0.40	-0.7
2,648,285	+		GFF2630	0.41	-2.3
2,648,285	+		GFF2630	0.41	-0.2
2,648,293	-		GFF2630	0.41	-0.9
2,648,293	-		GFF2630	0.41	-1.8
2,648,308	-		GFF2630	0.42	-1.7
2,648,308	-		GFF2630	0.42	-2.0
2,648,308	-		GFF2630	0.42	-1.3
2,648,319	+		GFF2630	0.43	-3.5
2,648,319	+		GFF2630	0.43	-1.2
2,648,331	+		GFF2630	0.44	-2.1
2,648,332	+		GFF2630	0.44	+1.9
2,648,332	-		GFF2630	0.44	-2.0
2,648,360	-		GFF2630	0.46	-2.3
2,648,367	+		GFF2630	0.46	-3.4
2,648,369	+		GFF2630	0.46	-1.1
2,648,387	+		GFF2630	0.48	-2.5
2,648,395	-		GFF2630	0.48	-1.3
2,648,399	+		GFF2630	0.49	-2.1
2,648,408	+		GFF2630	0.49	-1.3
2,648,414	-		GFF2630	0.50	-1.9
2,648,416	-		GFF2630	0.50	-1.8
2,648,418	+		GFF2630	0.50	-2.9
2,648,423	+		GFF2630	0.50	-2.6
2,648,426	-		GFF2630	0.50	-0.5
2,648,428	+		GFF2630	0.51	-1.3
2,648,428	+		GFF2630	0.51	-0.2
2,648,436	-		GFF2630	0.51	-1.8
2,648,477	+		GFF2630	0.54	-2.1
2,648,484	+		GFF2630	0.54	-1.9
2,648,503	-		GFF2630	0.56	-1.6
2,648,524	-		GFF2630	0.57	+1.0
2,648,532	+		GFF2630	0.58	-1.3
2,648,544	+		GFF2630	0.59	-0.8
2,648,544	+		GFF2630	0.59	-2.1
2,648,544	+		GFF2630	0.59	+0.2
2,648,578	+		GFF2630	0.61	-1.9
2,648,578	+		GFF2630	0.61	-1.1