Strain Fitness in Sphingobium sp. HT1-2 around GFF2622

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,641,392	+		GFF2620	0.63	-0.7
2,641,394	+		GFF2620	0.63	-0.1
2,641,400	-		GFF2620	0.64	+2.0
2,641,405	-		GFF2620	0.64	-0.3
2,641,417	+		GFF2620	0.66	+0.3
2,641,417	+		GFF2620	0.66	-0.1
2,641,417	-		GFF2620	0.66	+0.7
2,641,425	-		GFF2620	0.67	+0.9
2,641,425	-		GFF2620	0.67	+0.1
2,641,427	+		GFF2620	0.67	-2.0
2,641,427	+		GFF2620	0.67	+0.8
2,641,435	-		GFF2620	0.68	+0.3
2,641,442	+		GFF2620	0.69	-0.9
2,641,458	+		GFF2620	0.71	+0.5
2,641,458	+		GFF2620	0.71	+1.0
2,641,458	+		GFF2620	0.71	-2.0
2,641,460	+		GFF2620	0.72	-2.0
2,641,461	-		GFF2620	0.72	+0.1
2,641,466	-		GFF2620	0.72	-1.5
2,641,468	+		GFF2620	0.73	+0.2
2,641,468	+		GFF2620	0.73	-1.9
2,641,468	+		GFF2620	0.73	-0.9
2,641,468	+		GFF2620	0.73	+1.5
2,641,468	+		GFF2620	0.73	-1.3
2,641,468	+		GFF2620	0.73	-0.1
2,641,468	+		GFF2620	0.73	+0.2
2,641,468	+		GFF2620	0.73	+0.5
2,641,468	+		GFF2620	0.73	-0.5
2,641,468	+		GFF2620	0.73	+1.1
2,641,473	+		GFF2620	0.73	-0.9
2,641,473	+		GFF2620	0.73	+1.2
2,641,473	+		GFF2620	0.73	+0.2
2,641,473	+		GFF2620	0.73	-0.3
2,641,473	+		GFF2620	0.73	-0.0
2,641,473	+		GFF2620	0.73	+0.6
2,641,476	-		GFF2620	0.74	+0.2
2,641,476	-		GFF2620	0.74	+0.3
2,641,476	-		GFF2620	0.74	-0.9
2,641,476	-		GFF2620	0.74	-0.5
2,641,476	-		GFF2620	0.74	-0.0
2,641,476	-		GFF2620	0.74	-0.6
2,641,476	-		GFF2620	0.74	-1.6
2,641,476	-		GFF2620	0.74	-1.3
2,641,476	-		GFF2620	0.74	-2.8
2,641,476	-		GFF2620	0.74	-1.0
2,641,481	-		GFF2620	0.74	+0.9
2,641,481	-		GFF2620	0.74	+0.4
2,641,481	-		GFF2620	0.74	+0.0
2,641,481	-		GFF2620	0.74	+1.0
2,641,481	-		GFF2620	0.74	-0.4
2,641,481	-		GFF2620	0.74	+0.1
2,641,481	-		GFF2620	0.74	-0.4
2,641,511	+		GFF2620	0.78	-0.3
2,641,519	+		GFF2620	0.79	-0.4
2,641,527	-		GFF2620	0.80	+0.4
2,641,527	-		GFF2620	0.80	+0.1
2,641,527	-		GFF2620	0.80	-0.3
2,641,565	-		GFF2620	0.85	-1.2
2,641,593	+		GFF2620	0.89	-1.0
2,641,602	-				-1.4
2,641,617	-				+0.2
2,641,636	-				-1.0
2,641,645	+				+0.0
2,641,653	-				+0.7
2,641,653	-				+0.2
2,641,660	-				-0.6
2,641,660	-				+0.2
2,641,696	-				-0.5
2,641,733	-				-0.4
2,641,745	+				+0.9
2,641,752	+				-0.2
2,641,752	-				+1.5
2,641,752	-				+0.1
2,641,754	+				-1.2
2,641,754	+				+0.0
2,641,762	-				-0.3
2,641,762	-				-2.0
2,641,762	-				-1.5
2,641,762	-				+0.8
2,641,762	-				-0.0
2,641,767	-				+0.5
2,641,791	+				+0.3
2,641,798	+				+1.3
2,641,798	+				-0.7
2,641,799	-				+1.4
2,641,800	-				+0.1
2,641,806	-				+1.3
2,641,853	+		GFF2621	0.17	-1.9
2,641,853	+		GFF2621	0.17	-2.7
2,641,853	+		GFF2621	0.17	-0.1
2,641,853	+		GFF2621	0.17	+1.2
2,641,853	+		GFF2621	0.17	+0.9
2,641,861	-		GFF2621	0.18	-2.6
2,641,861	-		GFF2621	0.18	+0.2
2,641,861	-		GFF2621	0.18	-0.5
2,641,861	-		GFF2621	0.18	-0.0
2,641,863	+		GFF2621	0.19	-1.2
2,641,876	-		GFF2621	0.21	+0.4
2,641,878	+		GFF2621	0.21	+0.2
2,641,878	+		GFF2621	0.21	-0.6
2,641,897	+		GFF2621	0.24	+0.1
2,641,899	+		GFF2621	0.25	-1.4
2,641,902	+		GFF2621	0.25	-1.1
2,641,902	+		GFF2621	0.25	-0.8
2,641,905	-		GFF2621	0.26	-0.1
2,641,907	-		GFF2621	0.26	-0.7
2,641,928	-		GFF2621	0.30	-0.1
2,641,952	-		GFF2621	0.34	+0.2
2,641,952	-		GFF2621	0.34	-0.8
2,641,971	-		GFF2621	0.37	-1.2
2,641,986	-		GFF2621	0.40	-1.0
2,641,994	+		GFF2621	0.41	-1.6
2,642,002	-		GFF2621	0.43	+0.4
2,642,014	+		GFF2621	0.45	-2.0
2,642,020	+		GFF2621	0.46	-0.9
2,642,026	+		GFF2621	0.47	+0.1
2,642,028	-		GFF2621	0.47	-0.3
2,642,030	+		GFF2621	0.48	+0.4
2,642,094	+		GFF2621	0.59	+1.0
2,642,097	-		GFF2621	0.59	-0.8
2,642,098	+		GFF2621	0.59	+0.4
2,642,106	-		GFF2621	0.61	+1.0
2,642,150	+		GFF2621	0.68	+1.0
2,642,150	+		GFF2621	0.68	-0.7
2,642,150	+		GFF2621	0.68	-0.1
2,642,150	+		GFF2621	0.68	+0.6
2,642,150	+		GFF2621	0.68	-2.1
2,642,150	+		GFF2621	0.68	+0.6
2,642,150	+		GFF2621	0.68	-0.0
2,642,150	+		GFF2621	0.68	+1.4
2,642,150	+		GFF2621	0.68	-1.3
2,642,150	+		GFF2621	0.68	+0.6
2,642,158	-		GFF2621	0.70	-1.1
2,642,158	-		GFF2621	0.70	-0.2
2,642,158	-		GFF2621	0.70	-1.9
2,642,158	-		GFF2621	0.70	-0.0
2,642,158	-		GFF2621	0.70	+0.1
2,642,158	-		GFF2621	0.70	-2.8
2,642,158	-		GFF2621	0.70	-0.9
2,642,158	-		GFF2621	0.70	-0.4
2,642,158	-		GFF2621	0.70	+0.5
2,642,158	-		GFF2621	0.70	-0.9
2,642,158	-		GFF2621	0.70	-0.5
2,642,158	-		GFF2621	0.70	-0.6
2,642,158	-		GFF2621	0.70	-0.6
2,642,158	-		GFF2621	0.70	+1.0
2,642,158	-		GFF2621	0.70	-0.2
2,642,165	+		GFF2621	0.71	-0.1
2,642,165	+		GFF2621	0.71	-2.6
2,642,168	-		GFF2621	0.72	-0.8
2,642,179	-		GFF2621	0.73	-0.3
2,642,197	-		GFF2621	0.77	-2.0
2,642,203	+		GFF2621	0.78	+0.0
2,642,203	+		GFF2621	0.78	-0.6
2,642,215	+		GFF2621	0.80	+0.1
2,642,218	-		GFF2621	0.80	-1.4
2,642,220	+		GFF2621	0.81	+0.0
2,642,223	-		GFF2621	0.81	-0.6
2,642,228	-		GFF2621	0.82	-2.0
2,642,268	+		GFF2621	0.89	-1.3
2,642,278	+				-0.7
2,642,306	+				+0.3
2,642,334	+				-1.5
2,642,334	+				-0.4
2,642,339	+				+1.4
2,642,342	-				-0.4
2,642,342	-				-2.8
2,642,342	-				+0.1
2,642,342	-				-1.3
2,642,362	-				-0.3
2,642,390	+				+0.0
2,642,412	-				-0.9
2,642,414	+				-1.8
2,642,426	+				+0.4
2,642,427	+				+0.6
2,642,433	+				-1.0
2,642,435	-				-0.9
2,642,441	-				+1.5
2,642,480	+				+0.2
2,642,506	+		GFF2622	0.10	+0.0
2,642,506	+		GFF2622	0.10	+0.9
2,642,511	+		GFF2622	0.11	+0.1
2,642,527	-		GFF2622	0.12	-0.1
2,642,534	-		GFF2622	0.13	+0.4
2,642,539	+		GFF2622	0.13	+0.1
2,642,545	-		GFF2622	0.14	-0.8
2,642,559	-		GFF2622	0.15	-0.6
2,642,584	+		GFF2622	0.17	+0.3
2,642,589	-		GFF2622	0.17	-0.7
2,642,666	+		GFF2622	0.24	+0.7
2,642,666	+		GFF2622	0.24	+0.2
2,642,674	-		GFF2622	0.25	-0.1
2,642,697	+		GFF2622	0.27	+0.6
2,642,699	+		GFF2622	0.27	-2.1
2,642,705	-		GFF2622	0.27	-1.8
2,642,705	-		GFF2622	0.27	-1.5
2,642,710	+		GFF2622	0.28	+0.4
2,642,716	-		GFF2622	0.28	-0.3
2,642,758	+		GFF2622	0.32	-0.7
2,642,778	+		GFF2622	0.34	+0.4
2,642,786	-		GFF2622	0.34	+0.9
2,642,786	-		GFF2622	0.34	-0.8
2,642,802	-		GFF2622	0.36	-0.5
2,642,806	+		GFF2622	0.36	-1.4
2,642,809	-		GFF2622	0.36	-0.1
2,642,812	+		GFF2622	0.36	-1.2
2,642,818	-		GFF2622	0.37	-0.7
2,642,823	+		GFF2622	0.37	-0.0
2,642,834	+		GFF2622	0.38	-0.5
2,642,835	+		GFF2622	0.38	-0.3
2,642,839	-		GFF2622	0.39	+0.1
2,642,840	+		GFF2622	0.39	-0.8
2,642,848	-		GFF2622	0.39	+1.2
2,642,881	+		GFF2622	0.42	-0.0
2,642,886	+		GFF2622	0.43	-1.3
2,642,886	+		GFF2622	0.43	-0.5
2,642,886	+		GFF2622	0.43	+1.0
2,642,889	-		GFF2622	0.43	-0.8
2,642,889	-		GFF2622	0.43	-1.4
2,642,889	-		GFF2622	0.43	-1.4
2,642,894	-		GFF2622	0.43	-1.5
2,642,894	-		GFF2622	0.43	-0.1
2,642,896	+		GFF2622	0.44	+1.2
2,642,915	-		GFF2622	0.45	-1.3
2,642,920	-		GFF2622	0.46	-1.0
2,642,934	-		GFF2622	0.47	+0.1
2,642,947	-		GFF2622	0.48	+0.7
2,642,951	+		GFF2622	0.48	-1.3
2,642,962	-		GFF2622	0.49	+1.9
2,642,977	+		GFF2622	0.50	+0.0
2,642,983	-		GFF2622	0.51	+0.4
2,642,989	+		GFF2622	0.51	-1.4
2,642,997	-		GFF2622	0.52	+0.2
2,642,997	-		GFF2622	0.52	-0.6
2,643,019	-		GFF2622	0.54	-0.1
2,643,029	+		GFF2622	0.55	-0.4
2,643,033	-		GFF2622	0.55	+0.0
2,643,034	+		GFF2622	0.55	+0.0
2,643,034	+		GFF2622	0.55	-1.3
2,643,034	+		GFF2622	0.55	-0.4
2,643,034	+		GFF2622	0.55	+1.5
2,643,039	+		GFF2622	0.56	-0.5
2,643,039	+		GFF2622	0.56	-0.5
2,643,042	-		GFF2622	0.56	+1.0
2,643,042	-		GFF2622	0.56	-1.8
2,643,042	-		GFF2622	0.56	-0.7
2,643,042	-		GFF2622	0.56	+0.3
2,643,042	-		GFF2622	0.56	-0.1
2,643,042	-		GFF2622	0.56	-0.8
2,643,042	-		GFF2622	0.56	-1.2
2,643,042	-		GFF2622	0.56	-0.6
2,643,047	-		GFF2622	0.56	+0.2
2,643,054	+		GFF2622	0.57	+0.6
2,643,054	+		GFF2622	0.57	-1.0
2,643,054	+		GFF2622	0.57	-1.4
2,643,062	-		GFF2622	0.58	-0.5
2,643,074	-		GFF2622	0.59	-0.3
2,643,088	-		GFF2622	0.60	+0.7
2,643,093	-		GFF2622	0.60	-0.4
2,643,099	-		GFF2622	0.61	-0.1
2,643,106	+		GFF2622	0.61	-0.7
2,643,117	-		GFF2622	0.62	-0.1
2,643,128	-		GFF2622	0.63	-0.4
2,643,146	-		GFF2622	0.65	-0.6
2,643,167	+		GFF2622	0.67	+0.2
2,643,170	-		GFF2622	0.67	+1.0
2,643,196	+		GFF2622	0.69	+0.7
2,643,233	+		GFF2622	0.72	-0.3
2,643,281	+		GFF2622	0.76	-1.2
2,643,300	+		GFF2622	0.78	-1.7
2,643,302	-		GFF2622	0.78	-0.3
2,643,352	+		GFF2622	0.82	-0.1
2,643,360	-		GFF2622	0.83	+1.1
2,643,368	-		GFF2622	0.84	+1.0
2,643,368	-		GFF2622	0.84	-0.3
2,643,368	-		GFF2622	0.84	-2.5
2,643,368	-		GFF2622	0.84	-0.2
2,643,370	+		GFF2622	0.84	+0.4
2,643,378	+		GFF2622	0.85	-0.3
2,643,378	-		GFF2622	0.85	-1.1
2,643,386	-		GFF2622	0.85	-1.0
2,643,409	-		GFF2622	0.87	-0.5
2,643,413	-		GFF2622	0.88	+2.4
2,643,461	+				-0.3
2,643,462	+				-1.0
2,643,472	+				-0.1
2,643,480	-				+0.9
2,643,494	+				+0.7
2,643,494	+				-1.1
2,643,497	-				-0.2
2,643,528	+				-0.2
2,643,528	+				+0.4
2,643,536	-				-0.8
2,643,536	-				-1.7
2,643,545	-				+0.3
2,643,564	+				+0.9
2,643,595	+				-0.3
2,643,598	-				-0.1
2,643,598	-				-1.7
2,643,611	+				+1.2
2,643,611	+				+1.3
2,643,618	+				+0.7
2,643,618	+				+0.5
2,643,626	-				+0.8
2,643,626	-				-2.1
2,643,626	-				-0.8
2,643,656	+				-1.4
2,643,674	+				+0.2
2,643,674	+				+0.4
2,643,682	-				-1.6
2,643,693	+				-0.9
2,643,693	+				-0.3
2,643,693	+				-1.9
2,643,701	-				+0.7
2,643,709	+				+0.3
2,643,725	+				-0.8
2,643,771	-		GFF2623	0.13	-2.0
2,643,779	-		GFF2623	0.13	-1.3
2,643,779	-		GFF2623	0.13	+0.0
2,643,863	-		GFF2623	0.19	-0.6
2,643,871	-		GFF2623	0.19	+1.8
2,643,886	-		GFF2623	0.20	+0.7
2,643,897	-		GFF2623	0.21	-0.0
2,643,905	+		GFF2623	0.21	-1.6
2,643,950	-		GFF2623	0.24	+0.3
2,643,972	-		GFF2623	0.25	+0.5
2,644,005	-		GFF2623	0.27	-3.2
2,644,022	-		GFF2623	0.29	-0.3
2,644,057	-		GFF2623	0.31	+0.4
2,644,105	+		GFF2623	0.34	-0.8
2,644,110	+		GFF2623	0.34	-0.5
2,644,113	-		GFF2623	0.34	-0.2
2,644,157	+		GFF2623	0.37	-0.8
2,644,160	-		GFF2623	0.37	-1.2
2,644,176	+		GFF2623	0.38	+0.5
2,644,184	-		GFF2623	0.39	+0.5
2,644,194	+		GFF2623	0.39	-1.3
2,644,194	+		GFF2623	0.39	-0.3
2,644,207	-		GFF2623	0.40	-0.3
2,644,221	+		GFF2623	0.41	+0.8
2,644,222	+		GFF2623	0.41	-2.1
2,644,230	-		GFF2623	0.42	-0.3
2,644,250	+		GFF2623	0.43	-0.7
2,644,250	+		GFF2623	0.43	+0.6
2,644,271	-		GFF2623	0.44	-1.3
2,644,283	+		GFF2623	0.45	-0.8
2,644,291	-		GFF2623	0.45	+0.2
2,644,317	+		GFF2623	0.47	+0.5
2,644,330	-		GFF2623	0.48	-0.5
2,644,330	-		GFF2623	0.48	-1.7
2,644,376	+		GFF2623	0.51	-1.9
2,644,376	+		GFF2623	0.51	+1.0
2,644,377	+		GFF2623	0.51	-0.8
2,644,384	-		GFF2623	0.51	+0.4
2,644,384	-		GFF2623	0.51	+2.0
2,644,385	-		GFF2623	0.51	-0.6
2,644,392	+		GFF2623	0.52	-0.3
2,644,437	+		GFF2623	0.54	+0.1
2,644,437	+		GFF2623	0.54	-0.2
2,644,454	+		GFF2623	0.56	+1.1
2,644,461	+		GFF2623	0.56	+0.0
2,644,462	-		GFF2623	0.56	+0.9
2,644,462	-		GFF2623	0.56	-0.8
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