Strain Fitness in Sphingobium sp. HT1-2 around GFF2537

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,552,487	-		GFF2536	0.45	-1.7
2,552,528	-		GFF2536	0.48	-0.1
2,552,532	+		GFF2536	0.48	+0.1
2,552,549	+		GFF2536	0.49	-0.5
2,552,593	+		GFF2536	0.52	-1.3
2,552,595	-		GFF2536	0.52	-0.6
2,552,616	+		GFF2536	0.53	-0.1
2,552,620	+		GFF2536	0.53	+0.4
2,552,620	+		GFF2536	0.53	-0.6
2,552,620	+		GFF2536	0.53	+0.4
2,552,620	+		GFF2536	0.53	+1.4
2,552,620	+		GFF2536	0.53	-0.4
2,552,624	-		GFF2536	0.54	+0.2
2,552,624	-		GFF2536	0.54	-2.1
2,552,652	-		GFF2536	0.55	-0.2
2,552,662	+		GFF2536	0.56	-0.3
2,552,662	+		GFF2536	0.56	-1.6
2,552,665	-		GFF2536	0.56	+1.0
2,552,665	-		GFF2536	0.56	-0.4
2,552,665	-		GFF2536	0.56	-2.1
2,552,665	-		GFF2536	0.56	-0.5
2,552,670	-		GFF2536	0.57	-0.8
2,552,684	-		GFF2536	0.57	-1.7
2,552,692	+		GFF2536	0.58	+0.8
2,552,714	+		GFF2536	0.59	+0.3
2,552,722	-		GFF2536	0.60	-0.0
2,552,735	-		GFF2536	0.61	+1.0
2,552,735	-		GFF2536	0.61	-1.3
2,552,743	+		GFF2536	0.61	-0.3
2,552,747	+		GFF2536	0.61	-2.3
2,552,756	-		GFF2536	0.62	-0.4
2,552,776	-		GFF2536	0.63	+0.0
2,552,783	-		GFF2536	0.64	+0.5
2,552,783	-		GFF2536	0.64	-0.8
2,552,783	-		GFF2536	0.64	+0.7
2,552,790	+		GFF2536	0.64	-1.4
2,552,805	+		GFF2536	0.65	+0.9
2,552,840	+		GFF2536	0.67	-0.7
2,552,840	+		GFF2536	0.67	-0.4
2,552,841	+		GFF2536	0.67	-0.4
2,552,843	-		GFF2536	0.67	-0.7
2,552,845	+		GFF2536	0.68	+0.3
2,552,848	-		GFF2536	0.68	+0.2
2,552,848	-		GFF2536	0.68	-2.1
2,552,848	-		GFF2536	0.68	-0.5
2,552,848	-		GFF2536	0.68	+0.4
2,552,848	-		GFF2536	0.68	-0.2
2,552,853	-		GFF2536	0.68	-0.8
2,552,891	+		GFF2536	0.71	-1.9
2,552,891	+		GFF2536	0.71	+0.3
2,552,894	-		GFF2536	0.71	+0.7
2,552,899	-		GFF2536	0.71	+0.9
2,552,899	-		GFF2536	0.71	-2.3
2,552,910	+		GFF2536	0.72	+0.7
2,552,910	+		GFF2536	0.72	-1.3
2,552,910	+		GFF2536	0.72	+0.4
2,552,913	-		GFF2536	0.72	-0.8
2,552,915	+		GFF2536	0.72	+0.3
2,552,915	+		GFF2536	0.72	+0.1
2,552,923	-		GFF2536	0.73	-1.2
2,552,923	-		GFF2536	0.73	+0.7
2,552,923	-		GFF2536	0.73	+0.1
2,552,923	-		GFF2536	0.73	-1.8
2,552,929	+		GFF2536	0.73	-0.8
2,552,979	-		GFF2536	0.76	+1.1
2,553,041	-		GFF2536	0.80	-0.3
2,553,043	+		GFF2536	0.80	+0.4
2,553,048	+		GFF2536	0.80	+0.5
2,553,048	+		GFF2536	0.80	+0.3
2,553,048	+		GFF2536	0.80	-1.5
2,553,048	+		GFF2536	0.80	+1.0
2,553,048	+		GFF2536	0.80	-0.9
2,553,051	-		GFF2536	0.81	-0.8
2,553,056	-		GFF2536	0.81	+1.0
2,553,056	-		GFF2536	0.81	+1.3
2,553,056	-		GFF2536	0.81	+0.2
2,553,056	-		GFF2536	0.81	+0.2
2,553,056	-		GFF2536	0.81	-1.3
2,553,056	-		GFF2536	0.81	-0.9
2,553,056	-		GFF2536	0.81	-0.4
2,553,061	-		GFF2536	0.81	-1.2
2,553,127	+		GFF2536	0.85	-0.6
2,553,127	+		GFF2536	0.85	+0.5
2,553,161	-		GFF2536	0.88	+1.1
2,553,185	+		GFF2536	0.89	+0.3
2,553,186	+		GFF2536	0.89	-2.2
2,553,186	+		GFF2536	0.89	-0.3
2,553,186	+		GFF2536	0.89	-2.1
2,553,186	+		GFF2536	0.89	-1.3
2,553,193	-		GFF2536	0.90	-1.6
2,553,194	-		GFF2536	0.90	-1.1
2,553,201	+				-1.1
2,553,201	+				+0.3
2,553,204	-				-1.8
2,553,211	-				-1.8
2,553,218	-				-1.3
2,553,222	+				-1.5
2,553,222	+				-0.1
2,553,260	-				-0.6
2,553,282	+				-1.6
2,553,282	+				-0.3
2,553,282	+				-1.3
2,553,286	+				+0.7
2,553,294	+				-0.0
2,553,294	-				+0.0
2,553,300	-				-1.2
2,553,358	-				-1.5
2,553,388	+				-0.7
2,553,388	+				-1.2
2,553,396	-				-0.3
2,553,396	-				-1.0
2,553,400	+				-0.8
2,553,408	-				-1.7
2,553,408	-				-2.3
2,553,408	-				-1.7
2,553,408	-				-0.5
2,553,418	-				-0.4
2,553,418	-				-0.4
2,553,438	+				-0.3
2,553,439	+				-1.3
2,553,461	-				-0.4
2,553,470	+				-0.7
2,553,478	-				+0.5
2,553,483	+				-1.3
2,553,486	-				+0.1
2,553,488	+				+1.2
2,553,493	+				+0.4
2,553,493	+				-0.7
2,553,493	+				-0.8
2,553,493	+				-1.0
2,553,493	+				+0.3
2,553,493	+				-0.9
2,553,493	+				-1.3
2,553,493	+				-0.3
2,553,493	+				+1.4
2,553,501	-				-0.6
2,553,501	-				-0.4
2,553,501	-				-0.4
2,553,501	-				-1.0
2,553,501	-				+0.1
2,553,501	-				-3.1
2,553,501	-				-1.4
2,553,501	-				+0.0
2,553,501	-				-2.4
2,553,501	-				-0.2
2,553,505	+				-0.6
2,553,505	+				-0.5
2,553,505	+				-0.1
2,553,505	+				-0.4
2,553,505	+				-2.1
2,553,505	+				-0.9
2,553,505	+				-0.5
2,553,505	+				-0.1
2,553,505	+				-0.2
2,553,512	+				-1.9
2,553,513	-				-0.3
2,553,513	-				-1.3
2,553,513	-				-0.8
2,553,513	-				-0.5
2,553,513	-				+1.8
2,553,513	-				-2.1
2,553,513	-				+0.3
2,553,513	-				-0.7
2,553,513	-				+1.0
2,553,517	+				-0.5
2,553,530	+				+0.5
2,553,530	+				+0.1
2,553,531	+				-0.9
2,553,531	-				-0.7
2,553,536	+				-0.3
2,553,536	+				-1.3
2,553,536	+				-0.7
2,553,536	+				+1.0
2,553,539	-				-1.3
2,553,539	-				-0.2
2,553,541	+				-1.8
2,553,544	-				-0.3
2,553,544	-				-0.5
2,553,544	-				-0.4
2,553,554	+				+0.1
2,553,565	-				-0.7
2,553,597	+		GFF2537	0.12	-0.5
2,553,598	+		GFF2537	0.12	-0.5
2,553,598	+		GFF2537	0.12	-2.0
2,553,606	-		GFF2537	0.13	+0.2
2,553,606	-		GFF2537	0.13	-1.4
2,553,606	-		GFF2537	0.13	+0.2
2,553,611	-		GFF2537	0.14	-0.2
2,553,623	+		GFF2537	0.15	+0.3
2,553,628	+		GFF2537	0.15	-1.5
2,553,629	-		GFF2537	0.15	-0.6
2,553,666	-		GFF2537	0.19	+2.1
2,553,678	+		GFF2537	0.21	-0.9
2,553,681	+		GFF2537	0.21	+0.8
2,553,686	-		GFF2537	0.22	-0.1
2,553,740	-		GFF2537	0.27	-0.7
2,553,786	-		GFF2537	0.32	-1.0
2,553,786	-		GFF2537	0.32	-1.7
2,553,791	-		GFF2537	0.33	-0.3
2,553,800	+		GFF2537	0.34	+0.3
2,553,806	-		GFF2537	0.35	-1.9
2,553,808	-		GFF2537	0.35	+0.6
2,553,808	-		GFF2537	0.35	-1.2
2,553,813	-		GFF2537	0.35	+0.0
2,553,813	-		GFF2537	0.35	-0.6
2,553,813	-		GFF2537	0.35	-1.2
2,553,815	+		GFF2537	0.35	-0.2
2,553,815	+		GFF2537	0.35	-1.4
2,553,821	-		GFF2537	0.36	-0.1
2,553,860	+		GFF2537	0.40	-0.1
2,553,867	+		GFF2537	0.41	-0.9
2,553,867	+		GFF2537	0.41	-0.2
2,553,867	+		GFF2537	0.41	+0.2
2,553,871	+		GFF2537	0.42	+0.1
2,553,880	-		GFF2537	0.42	-0.4
2,553,880	-		GFF2537	0.42	-0.3
2,553,887	-		GFF2537	0.43	-0.0
2,553,892	-		GFF2537	0.44	-1.6
2,553,925	+		GFF2537	0.47	+0.6
2,553,930	+		GFF2537	0.48	-0.1
2,553,930	+		GFF2537	0.48	+0.0
2,553,932	-		GFF2537	0.48	+0.1
2,553,932	-		GFF2537	0.48	-0.5
2,553,933	-		GFF2537	0.48	+1.5
2,553,936	+		GFF2537	0.48	+0.1
2,553,938	-		GFF2537	0.49	-1.5
2,553,962	+		GFF2537	0.51	-1.1
2,553,985	+		GFF2537	0.54	+0.9
2,553,985	+		GFF2537	0.54	+0.5
2,553,993	-		GFF2537	0.55	+1.1
2,553,994	-		GFF2537	0.55	-1.4
2,554,017	+		GFF2537	0.57	-0.1
2,554,017	+		GFF2537	0.57	-1.2
2,554,017	+		GFF2537	0.57	-1.9
2,554,024	-		GFF2537	0.58	+0.9
2,554,025	-		GFF2537	0.58	+0.5
2,554,037	+		GFF2537	0.59	+1.0
2,554,038	+		GFF2537	0.59	-0.3
2,554,103	+		GFF2537	0.66	-0.3
2,554,108	+		GFF2537	0.67	-0.6
2,554,122	+		GFF2537	0.68	+0.6
2,554,187	+		GFF2537	0.75	+0.7
2,554,187	+		GFF2537	0.75	-0.6
2,554,187	+		GFF2537	0.75	-0.1
2,554,187	+		GFF2537	0.75	-1.6
2,554,187	+		GFF2537	0.75	-0.2
2,554,187	+		GFF2537	0.75	-2.0
2,554,187	+		GFF2537	0.75	-0.5
2,554,187	+		GFF2537	0.75	-0.4
2,554,187	+		GFF2537	0.75	+0.3
2,554,188	-		GFF2537	0.76	+0.6
2,554,195	-		GFF2537	0.76	-1.9
2,554,195	-		GFF2537	0.76	-1.3
2,554,195	-		GFF2537	0.76	+0.7
2,554,195	-		GFF2537	0.76	+0.1
2,554,195	-		GFF2537	0.76	+0.5
2,554,195	-		GFF2537	0.76	+0.3
2,554,195	-		GFF2537	0.76	-0.7
2,554,231	+		GFF2537	0.80	+0.4
2,554,239	+		GFF2537	0.81	-1.6
2,554,240	+		GFF2537	0.81	-0.6
2,554,265	+		GFF2537	0.84	-1.6
2,554,271	-		GFF2537	0.85	+0.1
2,554,285	+		GFF2537	0.86	-1.4
2,554,293	-		GFF2537	0.87	-2.1
2,554,297	-		GFF2537	0.87	+0.3
2,554,332	-				-0.6
2,554,346	+				-0.1
2,554,346	+				-0.8
2,554,365	+				-1.9
2,554,365	+				+0.8
2,554,365	+				-2.7
2,554,365	+				+0.9
2,554,365	+				-1.5
2,554,365	+				-0.3
2,554,365	+				+0.0
2,554,365	+				+0.9
2,554,373	-				-0.3
2,554,373	-				-1.5
2,554,373	-				-2.6
2,554,373	-				+0.7
2,554,375	+				-0.9
2,554,380	+				+1.0
2,554,383	-				-0.1
2,554,383	-				+0.1
2,554,385	+				-1.3
2,554,385	+				-0.6
2,554,388	-				-1.7
2,554,388	-				+0.4
2,554,410	-				-1.1
2,554,412	+				+1.4
2,554,412	+				+0.4
2,554,412	+				-1.9
2,554,419	-				-0.2
2,554,431	-				+0.6
2,554,447	+				-1.0
2,554,447	+				+0.2
2,554,447	+				-1.5
2,554,447	+				-0.9
2,554,447	+				-0.4
2,554,447	+				+1.0
2,554,447	+				-0.1
2,554,447	+				-0.2
2,554,447	+				+0.2
2,554,447	+				+2.0
2,554,447	+				+0.0
2,554,447	+				-0.1
2,554,447	+				+0.5
2,554,447	+				+0.0
2,554,447	+				+0.0
2,554,447	+				-1.5
2,554,447	+				+0.5
2,554,447	+				-0.5
2,554,447	+				-0.3
2,554,447	+				+1.7
2,554,447	+				-1.1
2,554,447	+				+0.9
2,554,447	+				+2.1
2,554,455	-				-0.7
2,554,455	-				+0.2
2,554,455	-				-1.6
2,554,455	-				-0.5
2,554,455	-				+0.4
2,554,455	-				-1.7
2,554,455	-				+1.4
2,554,455	-				+0.5
2,554,455	-				-1.0
2,554,455	-				-0.8
2,554,455	-				-0.5
2,554,455	-				-0.3
2,554,455	-				+1.4
2,554,455	-				-0.1
2,554,455	-				-0.2
2,554,455	-				-1.2
2,554,455	-				-0.4
2,554,455	-				-1.6
2,554,455	-				-0.9
2,554,455	-				-1.0
2,554,455	-				-0.1
2,554,455	-				-1.9
2,554,455	-				+0.9
2,554,455	-				-0.4
2,554,455	-				+1.1
2,554,455	-				+0.4
2,554,455	-				-0.5
2,554,455	-				-2.3
2,554,466	+				-0.2
2,554,474	-				+2.5
2,554,489	+				-1.4
2,554,577	+				-0.1
2,554,583	+				+1.2
2,554,595	+				-1.0
2,554,600	+		GFF2538	0.10	-1.8
2,554,640	-		GFF2538	0.15	-0.1
2,554,645	-		GFF2538	0.15	+0.4
2,554,687	-		GFF2538	0.20	-2.6
2,554,723	+		GFF2538	0.24	-0.8
2,554,723	+		GFF2538	0.24	+0.1
2,554,731	-		GFF2538	0.25	+1.4
2,554,741	-		GFF2538	0.26	-1.0
2,554,741	-		GFF2538	0.26	+0.1
2,554,749	+		GFF2538	0.27	-2.9
2,554,769	-		GFF2538	0.29	+0.9
2,554,812	+		GFF2538	0.34	+1.1
2,554,817	+		GFF2538	0.35	-0.5
2,554,817	+		GFF2538	0.35	+1.0
2,554,818	+		GFF2538	0.35	-0.6
2,554,825	-		GFF2538	0.36	-0.1
2,554,825	-		GFF2538	0.36	-0.3
2,554,825	-		GFF2538	0.36	-2.3
2,554,825	-		GFF2538	0.36	+0.1
2,554,825	-		GFF2538	0.36	+0.5
2,554,825	-		GFF2538	0.36	+0.5
2,554,843	-		GFF2538	0.38	+0.4
2,554,843	-		GFF2538	0.38	-1.0
2,554,883	-		GFF2538	0.42	-0.2
2,554,883	-		GFF2538	0.42	-0.4
2,554,883	-		GFF2538	0.42	-0.7
2,554,885	+		GFF2538	0.43	+0.4
2,554,893	-		GFF2538	0.44	+0.2
2,554,895	+		GFF2538	0.44	-1.1
2,554,917	+		GFF2538	0.46	-0.8
2,554,925	-		GFF2538	0.47	+0.9
2,554,933	-		GFF2538	0.48	+0.3
2,554,956	+		GFF2538	0.51	-1.9
2,554,976	+		GFF2538	0.53	+0.5
2,554,993	-		GFF2538	0.55	+0.5
2,554,995	+		GFF2538	0.55	+0.1
2,554,995	+		GFF2538	0.55	-0.1
2,554,995	+		GFF2538	0.55	-0.2
2,554,995	+		GFF2538	0.55	-0.1
2,555,003	-		GFF2538	0.56	+1.1
2,555,003	-		GFF2538	0.56	+0.4
2,555,003	-		GFF2538	0.56	-0.0
2,555,030	-		GFF2538	0.59	-0.0
2,555,032	+		GFF2538	0.59	-0.2
2,555,041	-		GFF2538	0.61	+1.0
2,555,041	-		GFF2538	0.61	-1.2
2,555,053	+		GFF2538	0.62	-0.3
2,555,058	+		GFF2538	0.62	-0.8
2,555,058	+		GFF2538	0.62	-0.6
2,555,066	-		GFF2538	0.63	+0.1
2,555,081	+		GFF2538	0.65	-0.9
2,555,083	+		GFF2538	0.65	-0.9
2,555,089	+		GFF2538	0.66	+0.4
2,555,114	+		GFF2538	0.69	+0.7
2,555,117	-		GFF2538	0.69	-0.3
2,555,124	+		GFF2538	0.70	+0.1
2,555,129	+		GFF2538	0.71	+0.8
2,555,129	+		GFF2538	0.71	+0.1
2,555,129	+		GFF2538	0.71	-0.3
2,555,129	+		GFF2538	0.71	-0.1
2,555,129	+		GFF2538	0.71	-0.2
2,555,129	+		GFF2538	0.71	+1.3
2,555,129	+		GFF2538	0.71	-1.8
2,555,132	-		GFF2538	0.71	-0.1
2,555,137	-		GFF2538	0.71	+0.4
2,555,137	-		GFF2538	0.71	+0.4
2,555,137	-		GFF2538	0.71	-0.2
2,555,137	-		GFF2538	0.71	+1.1
2,555,137	-		GFF2538	0.71	-1.2
2,555,137	-		GFF2538	0.71	-0.4
2,555,137	-		GFF2538	0.71	+0.8
2,555,137	-		GFF2538	0.71	+0.1
2,555,137	-		GFF2538	0.71	+0.5
2,555,137	-		GFF2538	0.71	+0.5
2,555,137	-		GFF2538	0.71	-1.6
2,555,137	-		GFF2538	0.71	-1.6
2,555,169	+		GFF2538	0.75	+1.0
2,555,200	+		GFF2538	0.79	-0.0
2,555,200	+		GFF2538	0.79	+1.5
2,555,210	+		GFF2538	0.80	+0.0
2,555,210	+		GFF2538	0.80	+1.4
2,555,218	-		GFF2538	0.81	-2.7
2,555,218	-		GFF2538	0.81	-0.7
2,555,218	-		GFF2538	0.81	+0.6
2,555,218	-		GFF2538	0.81	-0.5
2,555,247	+		GFF2538	0.84	-1.9
2,555,252	+		GFF2538	0.85	+1.4
2,555,252	+		GFF2538	0.85	-1.4
2,555,252	+		GFF2538	0.85	-0.4
2,555,252	+		GFF2538	0.85	+1.7
2,555,252	+		GFF2538	0.85	-0.1
2,555,252	+		GFF2538	0.85	+0.0
2,555,252	+		GFF2538	0.85	+1.3
2,555,252	+		GFF2538	0.85	+0.8
2,555,252	+		GFF2538	0.85	-0.2
2,555,260	-		GFF2538	0.86	+1.1
2,555,260	-		GFF2538	0.86	+0.4
2,555,260	-		GFF2538	0.86	+1.1
2,555,260	-		GFF2538	0.86	-1.3
2,555,371	+				-0.3
2,555,371	+				-1.3
2,555,372	-				+0.5
2,555,379	-				-1.6
2,555,398	+				-0.3
2,555,398	+				-0.7
2,555,398	+				-0.0
2,555,398	+				-0.7
2,555,398	+				-1.3
2,555,398	+				-1.5
2,555,398	+				-3.0
2,555,398	+				+0.2
2,555,398	+				+0.7
2,555,398	+				+0.6
2,555,398	-				-1.3
2,555,404	-				+0.9
2,555,404	-				-0.3
2,555,404	-				-2.5
2,555,404	-				+1.4
2,555,406	-				+0.1
2,555,406	-				+0.3
2,555,406	-				-0.5
2,555,406	-				-1.2
2,555,406	-				+0.2
2,555,406	-				-1.1
2,555,406	-				-0.1
2,555,406	-				+0.1
2,555,406	-				+0.6
2,555,406	-				-0.0
2,555,406	-				+0.1
2,555,406	-				-0.7
2,555,406	-				+0.5
2,555,406	-				-0.2
2,555,406	-				+0.6
2,555,406	-				-2.0
2,555,406	-				-1.4
2,555,406	-				-0.1
2,555,406	-				+0.2
2,555,406	-				-0.1