Strain Fitness in Sphingobium sp. HT1-2 around GFF2523

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,539,945	+		GFF2519	0.71	+0.2
2,539,949	+		GFF2519	0.72	+0.2
2,539,950	+		GFF2519	0.72	+0.3
2,539,950	+		GFF2519	0.72	-2.3
2,539,950	+		GFF2519	0.72	+0.6
2,539,950	+		GFF2519	0.72	+0.7
2,539,950	+		GFF2519	0.72	+0.6
2,539,950	+		GFF2519	0.72	-1.6
2,539,950	+		GFF2519	0.72	+0.8
2,539,950	+		GFF2519	0.72	+1.2
2,539,957	-		GFF2519	0.73	+0.1
2,539,958	-		GFF2519	0.74	-0.6
2,539,958	-		GFF2519	0.74	-0.5
2,539,958	-		GFF2519	0.74	-0.8
2,539,958	-		GFF2519	0.74	+0.1
2,539,958	-		GFF2519	0.74	-1.7
2,539,958	-		GFF2519	0.74	-1.3
2,539,963	-		GFF2519	0.74	-1.8
2,539,984	+		GFF2519	0.78	-0.0
2,540,022	+		GFF2519	0.84	-0.8
2,540,022	+		GFF2519	0.84	+1.0
2,540,030	-		GFF2519	0.86	+0.2
2,540,080	-				-2.0
2,540,165	+		GFF2520	0.23	-0.5
2,540,170	+		GFF2520	0.26	-0.4
2,540,173	-		GFF2520	0.28	+2.0
2,540,173	-		GFF2520	0.28	+0.5
2,540,175	+		GFF2520	0.29	+0.1
2,540,175	+		GFF2520	0.29	+1.1
2,540,175	+		GFF2520	0.29	+0.4
2,540,175	+		GFF2520	0.29	+1.0
2,540,175	+		GFF2520	0.29	+0.0
2,540,180	+		GFF2520	0.32	+0.6
2,540,180	+		GFF2520	0.32	-1.0
2,540,180	+		GFF2520	0.32	+0.8
2,540,180	+		GFF2520	0.32	-0.7
2,540,183	-		GFF2520	0.34	+1.1
2,540,183	-		GFF2520	0.34	-1.2
2,540,183	-		GFF2520	0.34	-1.0
2,540,183	-		GFF2520	0.34	+1.1
2,540,183	-		GFF2520	0.34	-1.0
2,540,188	-		GFF2520	0.37	-1.1
2,540,193	-		GFF2520	0.40	+0.5
2,540,196	+		GFF2520	0.42	-1.2
2,540,212	+		GFF2520	0.52	+0.7
2,540,220	-		GFF2520	0.57	+0.1
2,540,220	-		GFF2520	0.57	+0.9
2,540,257	+		GFF2520	0.80	+0.8
2,540,301	-				+0.1
2,540,303	+				+1.0
2,540,303	+				-0.1
2,540,311	-				+0.2
2,540,311	-				+0.4
2,540,311	-				-2.4
2,540,311	-				+0.2
2,540,316	+				-2.0
2,540,319	-				-0.9
2,540,319	-				-1.8
2,540,319	-				+0.1
2,540,319	-				-2.1
2,540,334	+				-1.7
2,540,334	+				+0.4
2,540,334	+				-0.3
2,540,336	+		GFF2521	0.11	-1.0
2,540,336	+		GFF2521	0.11	-0.5
2,540,336	+		GFF2521	0.11	-0.4
2,540,336	+		GFF2521	0.11	+0.3
2,540,339	-		GFF2521	0.12	-0.4
2,540,344	+		GFF2521	0.14	-0.8
2,540,344	+		GFF2521	0.14	-1.1
2,540,344	-		GFF2521	0.14	+0.1
2,540,344	-		GFF2521	0.14	+0.0
2,540,344	-		GFF2521	0.14	+1.1
2,540,344	-		GFF2521	0.14	+0.3
2,540,344	-		GFF2521	0.14	-0.4
2,540,344	-		GFF2521	0.14	-0.2
2,540,352	-		GFF2521	0.18	-0.6
2,540,357	+		GFF2521	0.20	+0.2
2,540,364	-		GFF2521	0.24	+0.0
2,540,373	-		GFF2521	0.28	-1.3
2,540,380	-		GFF2521	0.31	-0.4
2,540,381	-		GFF2521	0.31	-2.2
2,540,398	+		GFF2521	0.39	-0.5
2,540,400	+		GFF2521	0.40	-1.5
2,540,406	-		GFF2521	0.43	-0.1
2,540,406	-		GFF2521	0.43	-2.2
2,540,408	+		GFF2521	0.44	-1.0
2,540,411	-		GFF2521	0.45	+0.7
2,540,416	-		GFF2521	0.48	-0.2
2,540,418	+		GFF2521	0.49	+1.1
2,540,421	-		GFF2521	0.50	-0.2
2,540,421	-		GFF2521	0.50	-2.7
2,540,421	-		GFF2521	0.50	+0.1
2,540,434	-		GFF2521	0.56	-1.2
2,540,434	-		GFF2521	0.56	-0.7
2,540,473	+		GFF2521	0.74	-0.3
2,540,473	+		GFF2521	0.74	-1.2
2,540,481	-		GFF2521	0.78	-0.5
2,540,481	-		GFF2521	0.78	+0.8
2,540,481	-		GFF2521	0.78	-1.4
2,540,485	-		GFF2521	0.80	-0.3
2,540,487	+		GFF2521	0.81	-0.9
2,540,492	+		GFF2521	0.83	+0.3
2,540,493	-		GFF2521	0.83	+0.3
2,540,493	-		GFF2521	0.83	+1.4
2,540,497	+		GFF2521	0.85	-0.0
2,540,497	+		GFF2521	0.85	+2.1
2,540,497	+		GFF2521	0.85	+0.8
2,540,500	-		GFF2521	0.87	-0.5
2,540,500	-		GFF2521	0.87	-1.7
2,540,500	-		GFF2521	0.87	-0.5
2,540,503	+		GFF2521	0.88	-0.0
2,540,505	-		GFF2521	0.89	-0.5
2,540,505	-		GFF2521	0.89	-0.6
2,540,506	-		GFF2521	0.89	+0.1
2,540,508	+				-1.2
2,540,508	+				+0.2
2,540,508	+				+1.2
2,540,508	+				-0.3
2,540,508	+				-0.0
2,540,508	+				-1.5
2,540,508	+				-0.3
2,540,508	+				-1.5
2,540,508	+				-0.5
2,540,516	-				-0.6
2,540,516	-				-1.2
2,540,523	-				-1.3
2,540,531	-				+0.1
2,540,531	-				-0.2
2,540,553	+				-0.7
2,540,560	+				+0.4
2,540,560	+				-0.5
2,540,560	+				+0.8
2,540,560	+				-1.3
2,540,560	+				-0.4
2,540,560	+				+0.1
2,540,561	-				-0.2
2,540,561	-				-0.4
2,540,561	-				+0.6
2,540,561	-				+1.4
2,540,563	+		GFF2522	0.10	-0.4
2,540,568	-		GFF2522	0.13	+0.8
2,540,568	-		GFF2522	0.13	-0.8
2,540,570	-		GFF2522	0.14	-1.4
2,540,573	+		GFF2522	0.16	-0.5
2,540,578	+		GFF2522	0.18	+0.4
2,540,579	+		GFF2522	0.19	-2.0
2,540,579	+		GFF2522	0.19	-0.2
2,540,586	+		GFF2522	0.23	-0.2
2,540,586	+		GFF2522	0.23	-1.0
2,540,586	-		GFF2522	0.23	+0.6
2,540,586	-		GFF2522	0.23	+0.3
2,540,586	-		GFF2522	0.23	+0.1
2,540,594	-		GFF2522	0.27	-0.4
2,540,634	+		GFF2522	0.48	-0.5
2,540,634	+		GFF2522	0.48	+1.7
2,540,642	-		GFF2522	0.53	+1.2
2,540,642	-		GFF2522	0.53	-1.2
2,540,669	+		GFF2522	0.67	+0.4
2,540,677	-		GFF2522	0.72	-1.7
2,540,677	-		GFF2522	0.72	+0.8
2,540,688	+		GFF2522	0.77	+0.8
2,540,714	-				-0.2
2,540,735	+				+0.4
2,540,743	-				+0.0
2,540,743	-				+0.4
2,540,750	+				+1.1
2,540,860	+				-3.0
2,540,866	+				+0.7
2,540,895	-				+0.2
2,540,928	+				-0.4
2,540,939	-				-1.0
2,540,939	-				-1.2
2,540,969	-				-1.5
2,540,969	-				+0.4
2,540,973	-				-2.6
2,540,975	+				+0.0
2,540,977	+				+0.3
2,540,985	+				+0.3
2,540,985	-				-0.2
2,540,985	-				-1.7
2,540,993	-				+0.3
2,540,995	+				-0.5
2,540,995	+				-1.3
2,540,995	+				-0.8
2,540,995	+				+2.3
2,541,003	-		GFF2523	0.10	+0.3
2,541,014	-		GFF2523	0.11	+0.7
2,541,041	+		GFF2523	0.14	-0.7
2,541,041	+		GFF2523	0.14	-1.5
2,541,041	+		GFF2523	0.14	-0.2
2,541,041	+		GFF2523	0.14	-0.3
2,541,041	+		GFF2523	0.14	-0.7
2,541,049	-		GFF2523	0.15	-1.5
2,541,049	-		GFF2523	0.15	+0.8
2,541,049	-		GFF2523	0.15	+1.1
2,541,049	-		GFF2523	0.15	+0.9
2,541,049	-		GFF2523	0.15	-0.9
2,541,049	-		GFF2523	0.15	+1.0
2,541,049	-		GFF2523	0.15	+0.2
2,541,071	-		GFF2523	0.17	+0.2
2,541,073	+		GFF2523	0.17	+1.2
2,541,127	+		GFF2523	0.22	-0.4
2,541,129	+		GFF2523	0.22	-0.7
2,541,131	+		GFF2523	0.23	+0.7
2,541,139	-		GFF2523	0.23	-0.4
2,541,182	-		GFF2523	0.27	-1.5
2,541,209	-		GFF2523	0.30	-1.3
2,541,462	+		GFF2523	0.54	-0.3
2,541,462	+		GFF2523	0.54	+0.6
2,541,462	+		GFF2523	0.54	-1.4
2,541,470	-		GFF2523	0.55	-0.5
2,541,470	-		GFF2523	0.55	-1.2
2,541,470	-		GFF2523	0.55	-0.7
2,541,504	+		GFF2523	0.58	-1.5
2,541,505	+		GFF2523	0.58	-0.5
2,541,513	-		GFF2523	0.59	-0.7
2,541,513	-		GFF2523	0.59	-0.9
2,541,513	-		GFF2523	0.59	-1.9
2,541,517	-		GFF2523	0.59	-1.9
2,541,518	-		GFF2523	0.60	-0.8
2,541,569	+		GFF2523	0.64	-0.2
2,541,572	-		GFF2523	0.65	-2.0
2,541,574	+		GFF2523	0.65	+0.5
2,541,574	+		GFF2523	0.65	-0.3
2,541,576	-		GFF2523	0.65	-1.0
2,541,577	-		GFF2523	0.65	-1.5
2,541,582	+		GFF2523	0.66	-1.3
2,541,582	-		GFF2523	0.66	-1.2
2,541,582	-		GFF2523	0.66	+0.1
2,541,582	-		GFF2523	0.66	-0.4
2,541,582	-		GFF2523	0.66	-1.1
2,541,600	-		GFF2523	0.67	+0.6
2,541,600	-		GFF2523	0.67	+0.7
2,541,610	-		GFF2523	0.68	+1.4
2,541,613	+		GFF2523	0.69	+0.5
2,541,613	+		GFF2523	0.69	-0.2
2,541,614	+		GFF2523	0.69	-1.5
2,541,621	-		GFF2523	0.69	+0.8
2,541,648	-		GFF2523	0.72	+1.0
2,541,650	+		GFF2523	0.72	-1.1
2,541,655	+		GFF2523	0.73	+1.2
2,541,663	-		GFF2523	0.73	+0.6
2,541,663	-		GFF2523	0.73	-0.1
2,541,663	-		GFF2523	0.73	+0.3
2,541,663	-		GFF2523	0.73	-1.5
2,541,679	+		GFF2523	0.75	+0.1
2,541,681	+		GFF2523	0.75	-0.6
2,541,689	-		GFF2523	0.76	+0.4
2,541,712	+		GFF2523	0.78	-1.5
2,541,712	+		GFF2523	0.78	+0.3
2,541,712	+		GFF2523	0.78	+0.9
2,541,720	-		GFF2523	0.79	+0.4
2,541,720	-		GFF2523	0.79	-0.5
2,541,720	-		GFF2523	0.79	-1.0
2,541,724	+		GFF2523	0.79	-0.1
2,541,730	+		GFF2523	0.80	+0.9
2,541,740	+		GFF2523	0.81	-1.5
2,541,743	+		GFF2523	0.81	-1.7
2,541,748	-		GFF2523	0.81	-1.3
2,541,756	+		GFF2523	0.82	+0.4
2,541,756	+		GFF2523	0.82	-0.3
2,541,764	+		GFF2523	0.83	-2.0
2,541,767	-		GFF2523	0.83	-0.4
2,541,772	-		GFF2523	0.84	+1.0
2,541,791	+		GFF2523	0.86	+0.0
2,541,791	+		GFF2523	0.86	-0.3
2,541,799	-		GFF2523	0.86	-0.4
2,541,799	-		GFF2523	0.86	-0.3
2,541,799	-		GFF2523	0.86	-0.1
2,541,828	+		GFF2523	0.89	+0.1
2,541,836	+		GFF2523	0.90	+0.7
2,541,836	-		GFF2523	0.90	-0.8
2,541,836	-		GFF2523	0.90	-1.3
2,541,836	-		GFF2523	0.90	+0.8
2,541,836	-		GFF2523	0.90	-2.6
2,541,836	-		GFF2523	0.90	-0.1
2,541,848	-				-1.2
2,541,858	-				+0.4
2,541,869	+				-0.0
2,541,874	-				+1.7
2,541,876	+				+1.6
2,541,884	-				-0.0
2,541,901	+				-0.7
2,541,901	+				-0.5
2,541,901	+				+0.4
2,541,901	+				-1.0
2,541,901	+				-1.6
2,541,909	-				-0.4
2,541,909	-				+0.3
2,541,909	-				-1.4
2,541,926	-				+0.7
2,541,936	+				-0.6
2,541,936	+				-0.5
2,541,948	-				-0.3
2,541,965	+				+0.4
2,541,965	+				-0.5
2,541,965	+				-2.2
2,541,965	+				+0.2
2,541,965	+				-0.9
2,541,965	+				+0.0
2,541,965	+				-1.0
2,541,965	+				-1.7
2,541,965	+				+0.3
2,541,965	+				+0.6
2,541,965	+				-0.1
2,541,965	+				-0.5
2,541,965	+				-1.4
2,541,965	+				-0.7
2,541,965	+				-0.1
2,541,965	+				-1.2
2,541,965	+				+1.4
2,541,965	+				+0.4
2,541,965	+				-1.2
2,541,965	+				+0.2
2,541,965	+				-1.1
2,541,973	-				+0.3
2,541,973	-				-0.2
2,541,973	-				-1.2
2,541,973	-				+0.1
2,541,973	-				-1.3
2,541,973	-				+1.5
2,541,973	-				-1.6
2,541,973	-				-0.5
2,541,973	-				-1.5
2,541,977	+				-1.0
2,541,977	+				-0.9
2,541,977	+				+0.9
2,541,977	+				+0.7
2,541,977	+				-0.5
2,541,977	+				-0.8
2,541,985	-				-1.2
2,541,985	-				-0.7
2,541,985	-				-1.3
2,541,985	-				+0.3
2,541,985	-				+0.4
2,541,987	+				-1.0
2,542,007	+		GFF2524	0.15	+0.3
2,542,008	+		GFF2524	0.16	-0.9
2,542,013	+		GFF2524	0.18	-2.7
2,542,013	+		GFF2524	0.18	+0.8
2,542,013	+		GFF2524	0.18	-2.0
2,542,013	+		GFF2524	0.18	-1.2
2,542,021	-		GFF2524	0.21	-0.0
2,542,023	+		GFF2524	0.22	+0.3
2,542,031	-		GFF2524	0.25	-0.2
2,542,048	-		GFF2524	0.32	+0.3
2,542,062	+		GFF2524	0.37	+0.9
2,542,062	+		GFF2524	0.37	-0.4
2,542,067	+		GFF2524	0.39	+1.6
2,542,067	+		GFF2524	0.39	+0.9
2,542,070	-		GFF2524	0.40	-1.3
2,542,075	-		GFF2524	0.42	-0.6
2,542,077	+		GFF2524	0.43	+0.7
2,542,077	+		GFF2524	0.43	-0.8
2,542,077	+		GFF2524	0.43	-0.1
2,542,077	+		GFF2524	0.43	+0.3
2,542,077	+		GFF2524	0.43	+0.3
2,542,081	+		GFF2524	0.45	-1.0
2,542,083	-		GFF2524	0.46	-0.5
2,542,083	-		GFF2524	0.46	+0.1
2,542,085	+		GFF2524	0.46	+0.5
2,542,085	+		GFF2524	0.46	-1.7
2,542,085	+		GFF2524	0.46	-0.0
2,542,085	+		GFF2524	0.46	+0.5
2,542,085	+		GFF2524	0.46	-1.2
2,542,085	+		GFF2524	0.46	-0.4
2,542,085	-		GFF2524	0.46	-1.2
2,542,085	-		GFF2524	0.46	-1.2
2,542,085	-		GFF2524	0.46	-0.6
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