Strain Fitness in Sphingobium sp. HT1-2 around GFF2515

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,535,961	-		GFF2513	0.68	+0.6
2,535,966	-		GFF2513	0.68	+0.2
2,535,966	-		GFF2513	0.68	+1.1
2,535,970	+		GFF2513	0.69	+0.8
2,535,973	+		GFF2513	0.69	+0.4
2,535,973	+		GFF2513	0.69	-0.2
2,535,981	-		GFF2513	0.70	-0.6
2,535,981	-		GFF2513	0.70	-0.4
2,535,981	-		GFF2513	0.70	+0.7
2,536,004	-		GFF2513	0.72	-0.6
2,536,009	-		GFF2513	0.72	-2.3
2,536,014	-		GFF2513	0.73	+0.4
2,536,014	-		GFF2513	0.73	-0.6
2,536,015	-		GFF2513	0.73	-0.4
2,536,017	+		GFF2513	0.73	-0.5
2,536,022	-		GFF2513	0.73	+0.7
2,536,077	+		GFF2513	0.78	-1.4
2,536,077	+		GFF2513	0.78	-0.6
2,536,086	+		GFF2513	0.79	-0.6
2,536,099	-		GFF2513	0.80	+0.7
2,536,131	+		GFF2513	0.82	-0.9
2,536,131	+		GFF2513	0.82	-1.2
2,536,131	+		GFF2513	0.82	+0.3
2,536,131	+		GFF2513	0.82	-0.6
2,536,131	+		GFF2513	0.82	+0.4
2,536,131	+		GFF2513	0.82	-0.9
2,536,131	+		GFF2513	0.82	-0.4
2,536,131	+		GFF2513	0.82	-0.1
2,536,131	+		GFF2513	0.82	+1.2
2,536,131	+		GFF2513	0.82	-0.9
2,536,131	+		GFF2513	0.82	-1.3
2,536,131	+		GFF2513	0.82	-0.9
2,536,131	+		GFF2513	0.82	-1.2
2,536,131	+		GFF2513	0.82	+0.1
2,536,131	+		GFF2513	0.82	-0.5
2,536,131	+		GFF2513	0.82	+0.9
2,536,131	+		GFF2513	0.82	+0.4
2,536,131	+		GFF2513	0.82	-1.3
2,536,131	+		GFF2513	0.82	-0.4
2,536,131	+		GFF2513	0.82	+0.3
2,536,131	+		GFF2513	0.82	+0.1
2,536,131	+		GFF2513	0.82	-1.4
2,536,131	+		GFF2513	0.82	-1.5
2,536,131	+		GFF2513	0.82	-0.4
2,536,131	+		GFF2513	0.82	-0.3
2,536,131	+		GFF2513	0.82	-0.7
2,536,131	+		GFF2513	0.82	+0.0
2,536,131	+		GFF2513	0.82	-0.0
2,536,131	+		GFF2513	0.82	+0.2
2,536,131	+		GFF2513	0.82	-0.7
2,536,131	+		GFF2513	0.82	-0.2
2,536,131	+		GFF2513	0.82	+0.6
2,536,136	+		GFF2513	0.83	+0.6
2,536,139	-		GFF2513	0.83	+1.1
2,536,139	-		GFF2513	0.83	-0.9
2,536,139	-		GFF2513	0.83	-1.0
2,536,139	-		GFF2513	0.83	+0.7
2,536,139	-		GFF2513	0.83	-1.4
2,536,139	-		GFF2513	0.83	+0.9
2,536,139	-		GFF2513	0.83	-0.3
2,536,139	-		GFF2513	0.83	-0.9
2,536,139	-		GFF2513	0.83	-0.4
2,536,139	-		GFF2513	0.83	-0.1
2,536,139	-		GFF2513	0.83	-2.1
2,536,139	-		GFF2513	0.83	-0.8
2,536,139	-		GFF2513	0.83	-0.8
2,536,139	-		GFF2513	0.83	+0.8
2,536,139	-		GFF2513	0.83	-0.7
2,536,139	-		GFF2513	0.83	-0.6
2,536,139	-		GFF2513	0.83	+0.2
2,536,139	-		GFF2513	0.83	+0.4
2,536,139	-		GFF2513	0.83	+0.8
2,536,139	-		GFF2513	0.83	+0.2
2,536,139	-		GFF2513	0.83	+0.4
2,536,139	-		GFF2513	0.83	+0.8
2,536,139	-		GFF2513	0.83	-0.2
2,536,139	-		GFF2513	0.83	+0.3
2,536,139	-		GFF2513	0.83	-0.2
2,536,139	-		GFF2513	0.83	+0.0
2,536,139	-		GFF2513	0.83	+0.4
2,536,139	-		GFF2513	0.83	+0.6
2,536,139	-		GFF2513	0.83	-0.3
2,536,139	-		GFF2513	0.83	-2.0
2,536,139	-		GFF2513	0.83	-0.2
2,536,139	-		GFF2513	0.83	-1.1
2,536,144	-		GFF2513	0.84	-1.4
2,536,154	+		GFF2513	0.84	-0.4
2,536,154	+		GFF2513	0.84	-1.4
2,536,172	+		GFF2513	0.86	-1.6
2,536,197	+		GFF2513	0.88	-0.7
2,536,197	+		GFF2513	0.88	+0.2
2,536,200	-		GFF2513	0.88	-1.5
2,536,200	-		GFF2513	0.88	+1.0
2,536,200	-		GFF2513	0.88	+1.1
2,536,205	-		GFF2513	0.89	+0.5
2,536,218	+		GFF2513	0.90	+1.3
2,536,218	+		GFF2513	0.90	-0.5
2,536,218	+		GFF2513	0.90	-1.2
2,536,218	+		GFF2513	0.90	+0.2
2,536,225	+				+2.2
2,536,225	+				+0.3
2,536,226	-				-0.8
2,536,226	-				-0.1
2,536,251	+				-1.0
2,536,251	+				-1.1
2,536,259	-				-0.6
2,536,259	-				+0.0
2,536,261	+				+0.0
2,536,268	-				+0.7
2,536,269	-				+0.5
2,536,273	+				-1.5
2,536,292	-				-0.3
2,536,346	+				-0.7
2,536,349	-				+0.3
2,536,350	+				-1.4
2,536,351	+				+0.2
2,536,359	-				-0.0
2,536,367	+				-0.0
2,536,373	+				-0.7
2,536,378	+				+0.3
2,536,382	+				-2.0
2,536,398	+				-1.3
2,536,398	+				+0.1
2,536,398	+				+0.0
2,536,409	+				-0.5
2,536,427	+				+1.5
2,536,427	+				+1.1
2,536,431	+				-1.9
2,536,435	-				-2.0
2,536,439	-				+1.1
2,536,449	-				-1.4
2,536,457	+				-1.0
2,536,470	-				+0.9
2,536,473	+				-1.2
2,536,476	-				-2.0
2,536,481	-				-0.9
2,536,489	-				-1.3
2,536,500	+				-2.0
2,536,500	+				-0.9
2,536,500	+				+0.1
2,536,505	+				+1.4
2,536,508	-				-0.6
2,536,508	-				+0.2
2,536,513	-				+1.8
2,536,608	-				-0.2
2,536,615	+				+0.5
2,536,641	+		GFF2514	0.11	-0.7
2,536,668	+		GFF2514	0.19	+0.5
2,536,671	+		GFF2514	0.20	+0.8
2,536,673	+		GFF2514	0.21	-2.5
2,536,673	+		GFF2514	0.21	-1.8
2,536,673	+		GFF2514	0.21	-1.2
2,536,673	+		GFF2514	0.21	+0.3
2,536,673	+		GFF2514	0.21	+0.6
2,536,673	+		GFF2514	0.21	-0.7
2,536,673	+		GFF2514	0.21	-1.8
2,536,673	+		GFF2514	0.21	-0.4
2,536,673	+		GFF2514	0.21	-0.1
2,536,673	+		GFF2514	0.21	+0.2
2,536,673	+		GFF2514	0.21	-0.4
2,536,673	+		GFF2514	0.21	-2.0
2,536,673	+		GFF2514	0.21	+1.3
2,536,673	+		GFF2514	0.21	-0.3
2,536,673	+		GFF2514	0.21	-0.2
2,536,676	-		GFF2514	0.21	-2.5
2,536,681	-		GFF2514	0.23	+0.2
2,536,681	-		GFF2514	0.23	-1.2
2,536,681	-		GFF2514	0.23	-0.8
2,536,681	-		GFF2514	0.23	-0.9
2,536,681	-		GFF2514	0.23	+0.3
2,536,681	-		GFF2514	0.23	-0.4
2,536,681	-		GFF2514	0.23	+0.2
2,536,681	-		GFF2514	0.23	+0.1
2,536,687	+		GFF2514	0.25	+0.4
2,536,689	+		GFF2514	0.25	+0.3
2,536,689	+		GFF2514	0.25	+0.6
2,536,694	+		GFF2514	0.27	-1.3
2,536,694	+		GFF2514	0.27	-1.3
2,536,694	+		GFF2514	0.27	+0.3
2,536,694	+		GFF2514	0.27	+0.6
2,536,695	-		GFF2514	0.27	+1.0
2,536,697	-		GFF2514	0.28	+0.1
2,536,697	-		GFF2514	0.28	+0.1
2,536,702	-		GFF2514	0.29	-1.6
2,536,707	-		GFF2514	0.31	-2.1
2,536,707	-		GFF2514	0.31	-1.4
2,536,730	-		GFF2514	0.38	+1.0
2,536,733	+		GFF2514	0.38	-0.3
2,536,741	-		GFF2514	0.41	-1.2
2,536,749	+		GFF2514	0.43	-0.7
2,536,749	+		GFF2514	0.43	-0.4
2,536,755	+		GFF2514	0.45	+0.3
2,536,757	-		GFF2514	0.46	+0.4
2,536,757	-		GFF2514	0.46	-1.1
2,536,757	-		GFF2514	0.46	-1.2
2,536,763	-		GFF2514	0.47	-1.3
2,536,763	-		GFF2514	0.47	-0.2
2,536,763	-		GFF2514	0.47	+0.6
2,536,767	+		GFF2514	0.49	-0.3
2,536,768	-		GFF2514	0.49	-2.9
2,536,803	-		GFF2514	0.59	-0.0
2,536,805	+		GFF2514	0.60	+1.1
2,536,811	+		GFF2514	0.62	+0.4
2,536,846	+		GFF2514	0.72	+1.6
2,536,854	-		GFF2514	0.74	+0.1
2,536,864	-		GFF2514	0.77	-2.4
2,536,892	-		GFF2514	0.86	+0.6
2,536,900	+		GFF2514	0.88	+0.4
2,536,916	-				-1.5
2,536,918	+				-1.4
2,536,918	+				-0.8
2,536,925	-				+1.0
2,536,928	+				-1.9
2,536,933	+				+0.3
2,536,933	+				+0.4
2,536,933	+				-0.2
2,536,936	-				-0.1
2,536,936	-				-0.3
2,536,941	-				-2.5
2,536,952	+				-0.2
2,536,956	+				-0.1
2,536,956	+				+1.2
2,536,956	+				+0.1
2,536,956	+				+0.6
2,536,970	-				-0.8
2,536,977	-				+0.8
2,536,979	+				+1.2
2,536,979	+				-0.1
2,536,979	+				+0.2
2,536,979	+				-1.3
2,536,987	-				-0.7
2,536,987	-				+0.6
2,536,987	-				-0.2
2,536,987	-				+0.4
2,536,987	-				+1.0
2,536,987	-				-0.2
2,537,009	+				-0.5
2,537,013	-				+0.5
2,537,017	-				-0.8
2,537,017	-				-1.7
2,537,018	-				-0.9
2,537,018	-				-0.8
2,537,024	-				-0.6
2,537,040	+				+0.7
2,537,045	+				-1.4
2,537,045	+				+0.8
2,537,045	+				-0.8
2,537,045	+				-1.6
2,537,053	-				-1.9
2,537,053	-				-0.6
2,537,053	-				-0.3
2,537,070	+				+0.1
2,537,070	+				-1.6
2,537,070	-				-1.5
2,537,071	-				+1.2
2,537,078	-				+2.0
2,537,093	-		GFF2515	0.10	+1.4
2,537,096	+		GFF2515	0.11	+1.1
2,537,119	+		GFF2515	0.12	+0.9
2,537,119	+		GFF2515	0.12	-0.2
2,537,125	+		GFF2515	0.13	-1.2
2,537,125	+		GFF2515	0.13	-0.7
2,537,125	+		GFF2515	0.13	+0.5
2,537,125	+		GFF2515	0.13	-0.9
2,537,127	-		GFF2515	0.13	+0.2
2,537,130	+		GFF2515	0.13	-0.2
2,537,133	-		GFF2515	0.14	-0.7
2,537,133	-		GFF2515	0.14	-0.4
2,537,133	-		GFF2515	0.14	+1.3
2,537,135	+		GFF2515	0.14	+0.8
2,537,135	+		GFF2515	0.14	-0.7
2,537,135	+		GFF2515	0.14	+0.8
2,537,143	-		GFF2515	0.14	+1.1
2,537,143	-		GFF2515	0.14	-0.0
2,537,143	-		GFF2515	0.14	+0.1
2,537,174	+		GFF2515	0.17	-0.9
2,537,195	+		GFF2515	0.18	-0.0
2,537,195	+		GFF2515	0.18	-1.4
2,537,210	+		GFF2515	0.20	+1.0
2,537,216	+		GFF2515	0.20	+0.4
2,537,222	-		GFF2515	0.20	-0.4
2,537,222	-		GFF2515	0.20	-0.8
2,537,222	-		GFF2515	0.20	-0.2
2,537,237	-		GFF2515	0.22	-0.1
2,537,264	-		GFF2515	0.24	+1.5
2,537,266	+		GFF2515	0.24	+0.1
2,537,281	+		GFF2515	0.25	-0.1
2,537,306	+		GFF2515	0.27	-1.3
2,537,349	-		GFF2515	0.30	+0.4
2,537,350	-		GFF2515	0.30	-1.5
2,537,350	-		GFF2515	0.30	+0.0
2,537,358	+		GFF2515	0.31	+0.8
2,537,385	+		GFF2515	0.33	-1.8
2,537,405	-		GFF2515	0.35	-1.5
2,537,441	+		GFF2515	0.37	+0.0
2,537,449	-		GFF2515	0.38	+0.0
2,537,512	+		GFF2515	0.43	-0.2
2,537,514	-		GFF2515	0.43	-0.0
2,537,518	+		GFF2515	0.43	-1.1
2,537,520	-		GFF2515	0.44	-1.7
2,537,520	-		GFF2515	0.44	+0.1
2,537,520	-		GFF2515	0.44	-1.4
2,537,525	-		GFF2515	0.44	+0.9
2,537,526	-		GFF2515	0.44	-2.4
2,537,528	+		GFF2515	0.44	-0.6
2,537,528	-		GFF2515	0.44	-0.0
2,537,530	+		GFF2515	0.44	-1.7
2,537,530	+		GFF2515	0.44	-0.4
2,537,530	+		GFF2515	0.44	-1.8
2,537,531	-		GFF2515	0.44	-0.2
2,537,545	-		GFF2515	0.46	+1.1
2,537,545	-		GFF2515	0.46	-0.4
2,537,545	-		GFF2515	0.46	+1.1
2,537,560	-		GFF2515	0.47	-0.5
2,537,562	+		GFF2515	0.47	+0.2
2,537,562	+		GFF2515	0.47	+0.1
2,537,570	-		GFF2515	0.47	+0.2
2,537,570	-		GFF2515	0.47	+0.2
2,537,570	-		GFF2515	0.47	-1.1
2,537,581	+		GFF2515	0.48	+1.7
2,537,582	+		GFF2515	0.48	-0.9
2,537,586	+		GFF2515	0.49	-1.0
2,537,586	+		GFF2515	0.49	+0.9
2,537,600	-		GFF2515	0.50	+0.2
2,537,609	-		GFF2515	0.51	+0.3
2,537,623	+		GFF2515	0.52	-1.1
2,537,636	+		GFF2515	0.53	+0.4
2,537,660	+		GFF2515	0.54	-0.3
2,537,660	+		GFF2515	0.54	+0.3
2,537,660	+		GFF2515	0.54	-1.8
2,537,665	+		GFF2515	0.55	-0.2
2,537,666	+		GFF2515	0.55	-1.1
2,537,668	-		GFF2515	0.55	+1.1
2,537,668	-		GFF2515	0.55	-0.2
2,537,668	-		GFF2515	0.55	+0.6
2,537,668	-		GFF2515	0.55	-0.2
2,537,668	-		GFF2515	0.55	-0.8
2,537,668	-		GFF2515	0.55	-0.2
2,537,668	-		GFF2515	0.55	+0.2
2,537,721	+		GFF2515	0.59	-0.3
2,537,730	-		GFF2515	0.60	-0.9
2,537,741	+		GFF2515	0.61	+0.6
2,537,749	-		GFF2515	0.61	-1.4
2,537,755	+		GFF2515	0.62	-0.5
2,537,758	-		GFF2515	0.62	-0.6
2,537,763	-		GFF2515	0.62	-1.0
2,537,763	-		GFF2515	0.62	-0.0
2,537,763	-		GFF2515	0.62	-0.9
2,537,765	+		GFF2515	0.63	+1.9
2,537,768	-		GFF2515	0.63	-0.5
2,537,773	-		GFF2515	0.63	-0.9
2,537,793	+		GFF2515	0.65	-1.1
2,537,794	+		GFF2515	0.65	-1.2
2,537,813	+		GFF2515	0.66	+0.3
2,537,834	+		GFF2515	0.68	-0.2
2,537,836	+		GFF2515	0.68	+0.1
2,537,836	+		GFF2515	0.68	+1.1
2,537,836	+		GFF2515	0.68	-1.6
2,537,844	-		GFF2515	0.69	-1.5
2,537,844	-		GFF2515	0.69	-3.3
2,537,844	-		GFF2515	0.69	-0.3
2,537,844	-		GFF2515	0.69	-2.4
2,537,869	-		GFF2515	0.71	+0.7
2,537,887	+		GFF2515	0.72	-1.7
2,537,887	+		GFF2515	0.72	-0.6
2,537,887	+		GFF2515	0.72	-1.7
2,537,895	-		GFF2515	0.73	+1.6
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