Strain Fitness in Sphingobium sp. HT1-2 around GFF2496

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,516,948	+		GFF2495	0.70	+0.2
2,516,948	+		GFF2495	0.70	-1.4
2,516,948	+		GFF2495	0.70	-0.4
2,516,948	+		GFF2495	0.70	+0.4
2,516,948	+		GFF2495	0.70	-0.1
2,516,948	+		GFF2495	0.70	+0.6
2,516,948	+		GFF2495	0.70	-0.3
2,516,949	-		GFF2495	0.70	-0.9
2,516,949	-		GFF2495	0.70	+0.6
2,516,949	-		GFF2495	0.70	-1.5
2,516,953	+		GFF2495	0.70	-0.0
2,516,956	-		GFF2495	0.70	+0.1
2,516,956	-		GFF2495	0.70	-0.5
2,516,956	-		GFF2495	0.70	-1.4
2,516,956	-		GFF2495	0.70	+0.2
2,516,956	-		GFF2495	0.70	-0.3
2,516,956	-		GFF2495	0.70	+0.7
2,516,956	-		GFF2495	0.70	+0.2
2,516,972	+		GFF2495	0.70	+0.2
2,516,972	+		GFF2495	0.70	-0.5
2,516,972	-		GFF2495	0.70	-2.2
2,516,980	-		GFF2495	0.71	-0.1
2,516,980	-		GFF2495	0.71	+0.8
2,516,984	+		GFF2495	0.71	-0.0
2,516,984	+		GFF2495	0.71	+0.7
2,516,984	+		GFF2495	0.71	+0.3
2,516,992	-		GFF2495	0.71	-1.4
2,517,035	-		GFF2495	0.72	-0.3
2,517,060	+		GFF2495	0.73	-0.1
2,517,060	+		GFF2495	0.73	+0.1
2,517,060	+		GFF2495	0.73	-0.3
2,517,068	-		GFF2495	0.74	-0.9
2,517,068	-		GFF2495	0.74	+0.8
2,517,068	-		GFF2495	0.74	+1.0
2,517,076	+		GFF2495	0.74	+0.0
2,517,084	-		GFF2495	0.74	-0.1
2,517,085	+		GFF2495	0.74	-1.5
2,517,098	+		GFF2495	0.75	+1.2
2,517,113	+		GFF2495	0.75	-0.1
2,517,121	-		GFF2495	0.75	+1.7
2,517,131	-		GFF2495	0.76	-1.6
2,517,131	-		GFF2495	0.76	+1.1
2,517,141	-		GFF2495	0.76	-0.2
2,517,155	+		GFF2495	0.76	+1.1
2,517,170	+		GFF2495	0.77	+0.0
2,517,174	+		GFF2495	0.77	-0.4
2,517,174	+		GFF2495	0.77	+0.4
2,517,182	-		GFF2495	0.77	+0.8
2,517,182	-		GFF2495	0.77	-0.2
2,517,190	+		GFF2495	0.77	-1.6
2,517,190	+		GFF2495	0.77	-0.2
2,517,192	-		GFF2495	0.78	-1.2
2,517,192	-		GFF2495	0.78	-0.1
2,517,193	-		GFF2495	0.78	-0.3
2,517,214	+		GFF2495	0.78	-0.4
2,517,217	-		GFF2495	0.78	-0.2
2,517,217	-		GFF2495	0.78	-0.2
2,517,273	-		GFF2495	0.80	-2.2
2,517,291	+		GFF2495	0.81	-0.6
2,517,291	+		GFF2495	0.81	-0.0
2,517,295	-		GFF2495	0.81	-0.8
2,517,295	-		GFF2495	0.81	-0.4
2,517,297	+		GFF2495	0.81	-0.2
2,517,299	-		GFF2495	0.81	-0.2
2,517,300	-		GFF2495	0.81	+0.6
2,517,305	-		GFF2495	0.81	+1.1
2,517,331	+		GFF2495	0.82	-0.2
2,517,356	+		GFF2495	0.83	+0.9
2,517,402	+		GFF2495	0.84	-0.2
2,517,402	+		GFF2495	0.84	+0.1
2,517,408	-		GFF2495	0.85	+1.0
2,517,430	+		GFF2495	0.85	+0.8
2,517,438	-		GFF2495	0.85	-0.3
2,517,464	+		GFF2495	0.86	-0.3
2,517,464	+		GFF2495	0.86	+0.2
2,517,472	-		GFF2495	0.87	+0.5
2,517,472	-		GFF2495	0.87	-0.7
2,517,508	+		GFF2495	0.88	-1.2
2,517,509	+		GFF2495	0.88	+0.3
2,517,542	-		GFF2495	0.89	-0.4
2,517,543	+		GFF2495	0.89	+0.4
2,517,543	+		GFF2495	0.89	-1.5
2,517,557	+		GFF2495	0.89	-1.3
2,517,557	-		GFF2495	0.89	-0.7
2,517,590	-				-0.7
2,517,599	+				+0.8
2,517,619	-				-1.4
2,517,641	+				-0.6
2,517,645	+				+0.2
2,517,652	+				-0.2
2,517,652	+				-0.0
2,517,652	+				-2.3
2,517,661	+				+0.2
2,517,664	+				+0.0
2,517,709	+				-0.5
2,517,733	+				-2.3
2,517,733	+				+0.3
2,517,733	+				+0.0
2,517,733	+				-0.3
2,517,733	+				-1.2
2,517,740	-				+0.6
2,517,741	-				-0.3
2,517,741	-				+0.3
2,517,741	-				+0.7
2,517,741	-				-0.4
2,517,742	-				+1.4
2,517,742	-				-0.4
2,517,750	-				-2.0
2,517,795	+				-0.3
2,517,795	+				+0.5
2,517,803	-				+0.3
2,517,818	+				-1.2
2,517,826	+				-2.2
2,517,826	+				-0.3
2,517,826	+				+0.8
2,517,829	-				-1.8
2,517,834	-				-0.2
2,517,834	-				+1.6
2,517,834	-				-2.9
2,517,834	-				-1.1
2,517,834	-				+0.1
2,517,843	+				-1.4
2,517,843	+				+1.0
2,517,873	+				+1.1
2,517,880	+				-0.4
2,517,890	+				+1.8
2,517,912	+				-0.0
2,517,914	+				-0.2
2,517,928	-				+0.5
2,517,934	-				+0.9
2,517,969	+				-1.1
2,517,977	-				+1.1
2,517,991	-				+0.6
2,517,996	+				-1.1
2,517,998	-				-1.2
2,518,004	+		GFF2496	0.10	-1.9
2,518,025	+		GFF2496	0.12	+0.2
2,518,032	+		GFF2496	0.13	-1.5
2,518,032	+		GFF2496	0.13	+0.9
2,518,062	+		GFF2496	0.16	-0.5
2,518,073	+		GFF2496	0.17	-1.0
2,518,076	-		GFF2496	0.17	+0.6
2,518,076	-		GFF2496	0.17	-1.3
2,518,084	-		GFF2496	0.18	+1.0
2,518,094	-		GFF2496	0.19	-0.5
2,518,099	+		GFF2496	0.19	-0.1
2,518,114	-		GFF2496	0.21	+0.5
2,518,114	-		GFF2496	0.21	+0.9
2,518,141	+		GFF2496	0.23	-0.7
2,518,149	-		GFF2496	0.24	+1.1
2,518,149	-		GFF2496	0.24	-0.1
2,518,149	-		GFF2496	0.24	+0.2
2,518,149	-		GFF2496	0.24	+0.8
2,518,174	+		GFF2496	0.26	-1.9
2,518,182	-		GFF2496	0.27	-1.3
2,518,197	+		GFF2496	0.29	+1.4
2,518,217	+		GFF2496	0.30	-1.3
2,518,226	+		GFF2496	0.31	-0.3
2,518,229	-		GFF2496	0.32	-1.4
2,518,234	-		GFF2496	0.32	-0.0
2,518,241	+		GFF2496	0.33	+1.5
2,518,241	+		GFF2496	0.33	-1.9
2,518,241	+		GFF2496	0.33	-1.6
2,518,241	+		GFF2496	0.33	-1.0
2,518,249	-		GFF2496	0.33	-0.8
2,518,249	-		GFF2496	0.33	-1.0
2,518,332	+		GFF2496	0.41	-0.3
2,518,332	+		GFF2496	0.41	+0.4
2,518,332	+		GFF2496	0.41	+1.8
2,518,332	+		GFF2496	0.41	+0.4
2,518,340	-		GFF2496	0.42	-0.2
2,518,340	-		GFF2496	0.42	-0.1
2,518,381	+		GFF2496	0.46	+0.1
2,518,383	+		GFF2496	0.46	-0.2
2,518,383	+		GFF2496	0.46	-1.8
2,518,383	+		GFF2496	0.46	-1.1
2,518,391	-		GFF2496	0.47	-0.8
2,518,396	-		GFF2496	0.47	-0.5
2,518,435	+		GFF2496	0.51	+0.2
2,518,439	+		GFF2496	0.51	+0.6
2,518,454	+		GFF2496	0.53	-0.3
2,518,454	+		GFF2496	0.53	-0.2
2,518,461	+		GFF2496	0.53	+0.7
2,518,469	-		GFF2496	0.54	-3.0
2,518,479	-		GFF2496	0.55	-1.0
2,518,479	-		GFF2496	0.55	-2.5
2,518,530	+		GFF2496	0.60	+1.3
2,518,536	+		GFF2496	0.60	+0.2
2,518,538	-		GFF2496	0.61	+0.7
2,518,544	-		GFF2496	0.61	-1.2
2,518,544	-		GFF2496	0.61	-0.3
2,518,544	-		GFF2496	0.61	+0.9
2,518,544	-		GFF2496	0.61	-1.5
2,518,551	+		GFF2496	0.62	-0.9
2,518,559	-		GFF2496	0.63	+1.6
2,518,559	-		GFF2496	0.63	-0.3
2,518,559	-		GFF2496	0.63	-0.0
2,518,559	-		GFF2496	0.63	+0.1
2,518,559	-		GFF2496	0.63	+0.1
2,518,559	-		GFF2496	0.63	+0.4
2,518,591	+		GFF2496	0.66	+0.2
2,518,614	+		GFF2496	0.68	-0.9
2,518,636	+		GFF2496	0.70	-0.2
2,518,670	-		GFF2496	0.73	+1.0
2,518,671	+		GFF2496	0.73	-1.8
2,518,677	+		GFF2496	0.74	+0.7
2,518,682	+		GFF2496	0.74	-0.0
2,518,685	-		GFF2496	0.74	+0.3
2,518,685	-		GFF2496	0.74	-0.2
2,518,688	+		GFF2496	0.75	-0.2
2,518,709	+		GFF2496	0.77	+0.4
2,518,717	-		GFF2496	0.77	+0.3
2,518,717	-		GFF2496	0.77	-1.1
2,518,745	+		GFF2496	0.80	-2.0
2,518,781	+		GFF2496	0.83	+1.5
2,518,781	+		GFF2496	0.83	-0.0
2,518,790	-		GFF2496	0.84	-1.2
2,518,790	-		GFF2496	0.84	-1.3
2,518,790	-		GFF2496	0.84	-0.6
2,518,812	-		GFF2496	0.86	+0.4
2,518,817	-		GFF2496	0.87	+0.5
2,518,817	-		GFF2496	0.87	-1.1
2,518,817	-		GFF2496	0.87	-1.9
2,518,819	+		GFF2496	0.87	+0.3
2,518,827	-		GFF2496	0.88	-0.5
2,518,860	+				+1.2
2,518,860	+				+0.1
2,518,860	+				+0.4
2,518,860	+				-1.2
2,518,868	-				-1.4
2,518,868	-				+0.1
2,518,868	-				-2.0
2,518,868	-				-0.4
2,518,868	-				-0.7
2,518,919	+				-0.3
2,518,953	-				-1.1
2,518,961	-				+0.9
2,518,963	-				+0.2
2,518,964	+				+0.4
2,518,985	+				+0.1
2,518,985	+				+0.5
2,518,988	-				+0.3
2,518,990	+				-1.2
2,519,014	-				-0.2
2,519,026	+				+0.1
2,519,034	-				+0.4
2,519,050	+				-0.7
2,519,058	-				-1.1
2,519,109	+				+0.2
2,519,126	+		GFF2497	0.11	-0.2
2,519,126	+		GFF2497	0.11	-0.8
2,519,126	+		GFF2497	0.11	-2.6
2,519,128	+		GFF2497	0.11	+0.5
2,519,134	-		GFF2497	0.12	-0.1
2,519,134	-		GFF2497	0.12	+0.6
2,519,134	-		GFF2497	0.12	-0.5
2,519,136	-		GFF2497	0.12	+0.1
2,519,136	-		GFF2497	0.12	-0.8
2,519,136	-		GFF2497	0.12	-0.1
2,519,136	-		GFF2497	0.12	-0.4
2,519,136	-		GFF2497	0.12	-0.9
2,519,136	-		GFF2497	0.12	-0.4
2,519,136	-		GFF2497	0.12	+0.2
2,519,145	+		GFF2497	0.13	+0.7
2,519,153	-		GFF2497	0.14	-0.1
2,519,153	-		GFF2497	0.14	-2.3
2,519,167	-		GFF2497	0.16	+0.3
2,519,170	-		GFF2497	0.17	+0.3
2,519,175	+		GFF2497	0.17	-1.1
2,519,200	+		GFF2497	0.21	-0.6
2,519,200	+		GFF2497	0.21	-0.3
2,519,200	+		GFF2497	0.21	+0.1
2,519,206	+		GFF2497	0.22	-1.2
2,519,206	-		GFF2497	0.22	-0.1
2,519,208	-		GFF2497	0.22	-1.6
2,519,208	-		GFF2497	0.22	-2.1
2,519,213	-		GFF2497	0.23	+1.1
2,519,216	+		GFF2497	0.23	-2.1
2,519,216	+		GFF2497	0.23	-1.4
2,519,230	+		GFF2497	0.25	-0.1
2,519,230	+		GFF2497	0.25	+0.0
2,519,230	+		GFF2497	0.25	-2.1
2,519,230	+		GFF2497	0.25	-1.5
2,519,230	+		GFF2497	0.25	+0.6
2,519,230	+		GFF2497	0.25	-0.6
2,519,238	-		GFF2497	0.26	-1.2
2,519,238	-		GFF2497	0.26	-1.8
2,519,238	-		GFF2497	0.26	-0.5
2,519,242	+		GFF2497	0.27	+0.8
2,519,242	+		GFF2497	0.27	-1.0
2,519,250	-		GFF2497	0.28	-0.3
2,519,250	-		GFF2497	0.28	-1.8
2,519,250	-		GFF2497	0.28	+0.2
2,519,250	-		GFF2497	0.28	+1.0
2,519,264	-		GFF2497	0.30	-0.5
2,519,266	+		GFF2497	0.30	+0.1
2,519,284	-		GFF2497	0.32	-1.6
2,519,302	+		GFF2497	0.35	+0.2
2,519,302	+		GFF2497	0.35	-0.7
2,519,310	-		GFF2497	0.36	-0.1
2,519,310	-		GFF2497	0.36	+0.0
2,519,344	-		GFF2497	0.40	+0.7
2,519,344	-		GFF2497	0.40	+0.3
2,519,348	-		GFF2497	0.41	-0.4
2,519,349	-		GFF2497	0.41	+0.3
2,519,353	-		GFF2497	0.42	-0.1
2,519,388	+		GFF2497	0.46	-1.5
2,519,388	+		GFF2497	0.46	+0.3
2,519,388	+		GFF2497	0.46	-1.8
2,519,396	-		GFF2497	0.47	-1.5
2,519,396	-		GFF2497	0.47	+0.6
2,519,401	-		GFF2497	0.48	-2.2
2,519,424	-		GFF2497	0.51	-1.5
2,519,434	-		GFF2497	0.53	+0.2
2,519,441	+		GFF2497	0.54	-0.7
2,519,449	-		GFF2497	0.55	-0.1
2,519,461	+		GFF2497	0.56	-0.4
2,519,461	+		GFF2497	0.56	+0.1
2,519,461	+		GFF2497	0.56	-0.5
2,519,461	+		GFF2497	0.56	-0.2
2,519,461	+		GFF2497	0.56	-0.8
2,519,461	+		GFF2497	0.56	-2.1
2,519,461	+		GFF2497	0.56	+0.4
2,519,461	+		GFF2497	0.56	-1.2
2,519,461	+		GFF2497	0.56	+0.3
2,519,461	+		GFF2497	0.56	-0.5
2,519,469	-		GFF2497	0.57	-0.8
2,519,469	-		GFF2497	0.57	-0.5
2,519,469	-		GFF2497	0.57	-2.1
2,519,469	-		GFF2497	0.57	-1.3
2,519,469	-		GFF2497	0.57	-1.3
2,519,469	-		GFF2497	0.57	-0.0
2,519,469	-		GFF2497	0.57	+0.1
2,519,469	-		GFF2497	0.57	+0.3
2,519,469	-		GFF2497	0.57	-0.2
2,519,469	-		GFF2497	0.57	-0.5
2,519,469	-		GFF2497	0.57	-0.7
2,519,474	-		GFF2497	0.58	+0.9
2,519,476	-		GFF2497	0.58	+0.2
2,519,479	+		GFF2497	0.59	-2.1
2,519,479	+		GFF2497	0.59	-1.3
2,519,479	+		GFF2497	0.59	-0.3
2,519,479	+		GFF2497	0.59	+0.2
2,519,487	-		GFF2497	0.60	-1.1
2,519,487	-		GFF2497	0.60	-0.4
2,519,487	-		GFF2497	0.60	+0.3
2,519,492	-		GFF2497	0.60	+1.4
2,519,506	-		GFF2497	0.62	-0.6
2,519,577	+		GFF2497	0.72	-0.5
2,519,582	+		GFF2497	0.73	+0.6
2,519,582	+		GFF2497	0.73	-1.3
2,519,590	-		GFF2497	0.74	-2.1
2,519,595	+		GFF2497	0.74	-1.3
2,519,601	+		GFF2497	0.75	-1.4
2,519,602	+		GFF2497	0.75	-0.5
2,519,602	+		GFF2497	0.75	+0.0
2,519,602	+		GFF2497	0.75	+0.4
2,519,612	+		GFF2497	0.77	-0.5
2,519,612	+		GFF2497	0.77	-1.0
2,519,627	+		GFF2497	0.79	+0.1
2,519,686	+		GFF2497	0.87	+0.3
2,519,701	+		GFF2497	0.89	-0.8
2,519,703	+		GFF2497	0.89	-2.0
2,519,714	-				-1.2
2,519,793	+				-0.9
2,519,803	+				-2.8
2,519,803	+				-0.1
2,519,806	-				-0.1
2,519,811	-				-0.2
2,519,811	-				-0.2
2,519,811	-				-0.3
2,519,819	-				-2.2
2,519,822	-				-2.0