Strain Fitness in Sphingobium sp. HT1-2 around GFF2494

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,513,300	-				+0.0
2,513,308	+				-0.1
2,513,829	+				-0.3
2,513,837	-				+0.4
2,513,837	-				+0.7
2,513,881	+				-0.6
2,513,883	-				+0.6
2,513,887	-				+2.1
2,513,893	+				+0.2
2,513,893	+				+0.5
2,513,917	+		GFF2493	0.17	+0.1
2,513,917	+		GFF2493	0.17	+0.6
2,513,917	+		GFF2493	0.17	+1.1
2,513,917	+		GFF2493	0.17	-0.3
2,513,925	-		GFF2493	0.19	-0.1
2,513,925	-		GFF2493	0.19	-1.1
2,513,925	-		GFF2493	0.19	-0.0
2,513,925	-		GFF2493	0.19	+0.9
2,513,925	-		GFF2493	0.19	-0.2
2,513,925	-		GFF2493	0.19	+0.0
2,513,925	-		GFF2493	0.19	-0.6
2,513,964	+		GFF2493	0.32	-1.0
2,513,965	+		GFF2493	0.32	+0.2
2,513,965	+		GFF2493	0.32	-0.7
2,513,973	-		GFF2493	0.35	+0.3
2,513,973	-		GFF2493	0.35	+0.2
2,513,973	-		GFF2493	0.35	-0.9
2,513,973	-		GFF2493	0.35	-0.7
2,514,234	-				-0.4
2,514,243	+				-0.9
2,514,251	-				-0.2
2,514,251	-				+0.5
2,514,279	+		GFF2494	0.11	+0.1
2,514,285	+		GFF2494	0.12	-0.4
2,514,291	+		GFF2494	0.13	-1.4
2,514,308	+		GFF2494	0.17	-2.2
2,514,316	-		GFF2494	0.18	+1.0
2,514,316	-		GFF2494	0.18	-0.3
2,514,317	+		GFF2494	0.18	+0.7
2,514,317	+		GFF2494	0.18	-0.4
2,514,317	+		GFF2494	0.18	+1.5
2,514,317	+		GFF2494	0.18	+1.1
2,514,325	-		GFF2494	0.20	-1.2
2,514,330	-		GFF2494	0.21	-0.5
2,514,336	-		GFF2494	0.22	-0.7
2,514,356	+		GFF2494	0.25	-1.5
2,514,356	+		GFF2494	0.25	+0.3
2,514,356	+		GFF2494	0.25	+0.7
2,514,356	+		GFF2494	0.25	+0.5
2,514,356	+		GFF2494	0.25	-0.3
2,514,356	+		GFF2494	0.25	-0.3
2,514,356	+		GFF2494	0.25	-2.1
2,514,361	+		GFF2494	0.26	-1.5
2,514,364	-		GFF2494	0.27	-1.3
2,514,364	-		GFF2494	0.27	-0.5
2,514,364	-		GFF2494	0.27	+0.3
2,514,364	-		GFF2494	0.27	+0.3
2,514,366	+		GFF2494	0.27	-0.0
2,514,366	+		GFF2494	0.27	+0.7
2,514,366	+		GFF2494	0.27	-0.3
2,514,374	-		GFF2494	0.29	+0.3
2,514,374	-		GFF2494	0.29	-1.7
2,514,374	-		GFF2494	0.29	-0.5
2,514,374	-		GFF2494	0.29	-0.2
2,514,374	-		GFF2494	0.29	+1.2
2,514,379	-		GFF2494	0.30	+0.9
2,514,419	+		GFF2494	0.37	+0.8
2,514,422	-		GFF2494	0.37	+0.5
2,514,422	-		GFF2494	0.37	+0.8
2,514,422	-		GFF2494	0.37	+1.1
2,514,424	+		GFF2494	0.38	-1.0
2,514,424	+		GFF2494	0.38	+0.8
2,514,424	+		GFF2494	0.38	-0.6
2,514,424	+		GFF2494	0.38	+0.1
2,514,427	-		GFF2494	0.38	+0.6
2,514,432	-		GFF2494	0.39	+0.2
2,514,432	-		GFF2494	0.39	-0.2
2,514,432	-		GFF2494	0.39	-0.7
2,514,432	-		GFF2494	0.39	-1.3
2,514,432	-		GFF2494	0.39	-0.5
2,514,461	+		GFF2494	0.44	-1.4
2,514,464	-		GFF2494	0.45	+0.6
2,514,479	+		GFF2494	0.48	+0.2
2,514,479	+		GFF2494	0.48	+0.1
2,514,479	+		GFF2494	0.48	+2.0
2,514,479	+		GFF2494	0.48	-0.7
2,514,479	+		GFF2494	0.48	+1.0
2,514,479	+		GFF2494	0.48	-1.2
2,514,479	+		GFF2494	0.48	-0.5
2,514,479	+		GFF2494	0.48	+0.6
2,514,484	+		GFF2494	0.49	-0.7
2,514,485	-		GFF2494	0.49	-0.9
2,514,487	-		GFF2494	0.49	+0.2
2,514,487	-		GFF2494	0.49	-1.0
2,514,487	-		GFF2494	0.49	+0.4
2,514,487	-		GFF2494	0.49	-1.2
2,514,487	-		GFF2494	0.49	-0.3
2,514,487	-		GFF2494	0.49	-0.1
2,514,495	-		GFF2494	0.51	-0.0
2,514,510	+		GFF2494	0.53	+0.6
2,514,518	-		GFF2494	0.55	+0.8
2,514,537	-		GFF2494	0.58	-2.0
2,514,544	+		GFF2494	0.60	+0.3
2,514,544	+		GFF2494	0.60	+0.5
2,514,552	-		GFF2494	0.61	+1.0
2,514,552	-		GFF2494	0.61	+0.6
2,514,552	-		GFF2494	0.61	-0.1
2,514,552	-		GFF2494	0.61	-1.6
2,514,558	+		GFF2494	0.62	+2.0
2,514,560	+		GFF2494	0.62	+0.1
2,514,566	-		GFF2494	0.64	-0.7
2,514,566	-		GFF2494	0.64	-0.5
2,514,566	-		GFF2494	0.64	+0.4
2,514,572	+		GFF2494	0.65	-0.1
2,514,575	-		GFF2494	0.65	-0.6
2,514,589	+		GFF2494	0.68	-0.6
2,514,597	-		GFF2494	0.69	-0.5
2,514,618	+		GFF2494	0.73	-0.4
2,514,618	+		GFF2494	0.73	-0.7
2,514,626	-		GFF2494	0.74	+0.4
2,514,626	-		GFF2494	0.74	-1.3
2,514,626	-		GFF2494	0.74	-1.6
2,514,635	-		GFF2494	0.76	-1.3
2,514,640	-		GFF2494	0.77	-0.5
2,514,657	+		GFF2494	0.80	+0.6
2,514,657	+		GFF2494	0.80	-1.5
2,514,675	-		GFF2494	0.83	-2.2
2,514,702	+		GFF2494	0.88	+0.6
2,514,702	+		GFF2494	0.88	-0.8
2,514,736	+				-0.1
2,514,736	+				+0.5
2,514,736	+				-0.4
2,514,744	-				+0.6
2,514,774	-				+0.1
2,514,779	-				-0.0
2,514,784	-				-1.5
2,514,784	-				+0.5
2,514,784	-				-1.0
2,514,784	-				+1.8
2,514,815	+				-1.2
2,514,895	-				-1.2
2,514,904	-				-0.2
2,514,906	+				-0.2
2,514,909	+				+1.3
2,514,915	+				+1.0
2,514,915	+				-2.9
2,514,917	-				-0.3
2,514,917	-				-0.7
2,514,923	-				-1.2
2,514,923	-				-0.6
2,514,981	+				+0.1
2,515,005	-				-1.5
2,515,005	-				-0.9
2,515,005	-				+1.0
2,515,021	+				-0.2
2,515,042	+				-0.8
2,515,055	-				-1.5
2,515,065	+				-0.2
2,515,075	+				-0.3
2,515,082	-				+0.3
2,515,138	-		GFF2495	0.11	+1.8
2,515,165	-		GFF2495	0.12	-0.6
2,515,174	-		GFF2495	0.13	+0.2
2,515,184	-		GFF2495	0.13	-1.4
2,515,212	-		GFF2495	0.14	-0.5
2,515,212	-		GFF2495	0.14	-0.1
2,515,268	-		GFF2495	0.16	+0.8
2,515,288	-		GFF2495	0.16	-0.3
2,515,312	-		GFF2495	0.17	+1.2
2,515,313	-		GFF2495	0.17	+0.8
2,515,314	+		GFF2495	0.17	+0.4
2,515,314	+		GFF2495	0.17	-2.6
2,515,317	-		GFF2495	0.17	+0.4
2,515,325	+		GFF2495	0.17	+1.4
2,515,325	+		GFF2495	0.17	+0.7
2,515,343	+		GFF2495	0.18	+2.0
2,515,343	+		GFF2495	0.18	+1.2
2,515,421	-		GFF2495	0.21	-0.6
2,515,423	+		GFF2495	0.21	+1.3
2,515,423	+		GFF2495	0.21	-0.4
2,515,423	+		GFF2495	0.21	-0.8
2,515,431	-		GFF2495	0.21	+0.5
2,515,431	-		GFF2495	0.21	-1.4
2,515,431	-		GFF2495	0.21	+0.7
2,515,437	-		GFF2495	0.21	+0.1
2,515,438	-		GFF2495	0.21	-0.9
2,515,445	-		GFF2495	0.21	-1.6
2,515,465	+		GFF2495	0.22	-0.5
2,515,470	+		GFF2495	0.22	-0.5
2,515,470	+		GFF2495	0.22	-1.2
2,515,470	+		GFF2495	0.22	-2.3
2,515,470	+		GFF2495	0.22	-1.0
2,515,478	-		GFF2495	0.22	-0.2
2,515,478	-		GFF2495	0.22	-0.2
2,515,478	-		GFF2495	0.22	+0.3
2,515,478	-		GFF2495	0.22	+0.0
2,515,478	-		GFF2495	0.22	-0.0
2,515,478	-		GFF2495	0.22	+0.4
2,515,485	+		GFF2495	0.23	-1.2
2,515,491	-		GFF2495	0.23	+1.0
2,515,493	-		GFF2495	0.23	+0.2
2,515,531	+		GFF2495	0.24	-0.3
2,515,532	+		GFF2495	0.24	-0.0
2,515,540	-		GFF2495	0.24	-0.0
2,515,546	+		GFF2495	0.25	+0.1
2,515,578	+		GFF2495	0.26	+0.5
2,515,578	+		GFF2495	0.26	+1.0
2,515,578	+		GFF2495	0.26	-0.8
2,515,586	-		GFF2495	0.26	+0.6
2,515,586	-		GFF2495	0.26	-0.6
2,515,586	-		GFF2495	0.26	-0.4
2,515,586	-		GFF2495	0.26	+1.0
2,515,588	+		GFF2495	0.26	+0.7
2,515,588	+		GFF2495	0.26	+0.2
2,515,625	+		GFF2495	0.27	-1.6
2,515,625	+		GFF2495	0.27	-1.3
2,515,627	-		GFF2495	0.27	+1.2
2,515,633	-		GFF2495	0.27	+0.5
2,515,633	-		GFF2495	0.27	-2.2
2,515,659	+		GFF2495	0.28	-0.6
2,515,667	-		GFF2495	0.28	-0.9
2,515,669	-		GFF2495	0.29	+0.3
2,515,675	-		GFF2495	0.29	+0.4
2,515,687	+		GFF2495	0.29	-0.8
2,515,691	-		GFF2495	0.29	+0.2
2,515,693	+		GFF2495	0.29	+0.4
2,515,707	+		GFF2495	0.30	+0.3
2,515,715	-		GFF2495	0.30	-0.1
2,515,715	-		GFF2495	0.30	-1.4
2,515,752	+		GFF2495	0.31	-0.3
2,515,755	-		GFF2495	0.31	-0.2
2,515,765	-		GFF2495	0.32	+0.8