Strain Fitness in Sphingobium sp. HT1-2 around GFF2471

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,493,865	+		GFF2469	0.78	-0.1
2,493,865	+		GFF2469	0.78	+0.2
2,493,873	-		GFF2469	0.79	-0.2
2,493,982	+		GFF2469	0.87	+1.7
2,494,000	+		GFF2469	0.88	+0.5
2,494,005	+		GFF2469	0.89	-0.2
2,494,021	+				+1.3
2,494,026	+				-0.1
2,494,046	+				-1.3
2,494,079	+				+0.1
2,494,098	+				+1.8
2,494,133	+				-1.0
2,494,138	+				-0.3
2,494,138	+				+0.6
2,494,138	+				+0.8
2,494,143	+				-1.3
2,494,711	-		GFF2470	0.89	+0.9
2,494,711	-		GFF2470	0.89	+0.4
2,494,738	+				-1.4
2,494,746	-				-1.5
2,494,759	+				-3.0
2,494,858	+				-2.2
2,494,909	-				+0.9
2,494,916	+				+0.4
2,494,973	+				-0.4
2,494,977	-				+0.3
2,494,979	+				-1.3
2,494,979	+				-1.9
2,494,979	+				+1.2
2,494,979	+				-0.6
2,494,979	+				-1.5
2,494,979	+				-0.6
2,494,986	+				-1.5
2,494,987	-				-0.4
2,494,987	-				+0.3
2,494,987	-				-0.3
2,494,994	-				+0.4
2,495,010	-		GFF2471	0.11	-0.8
2,495,012	+		GFF2471	0.11	-2.1
2,495,019	+		GFF2471	0.11	-2.2
2,495,020	-		GFF2471	0.11	+0.9
2,495,025	+		GFF2471	0.11	+1.0
2,495,030	+		GFF2471	0.12	-2.1
2,495,030	+		GFF2471	0.12	-1.4
2,495,033	-		GFF2471	0.12	-0.5
2,495,033	-		GFF2471	0.12	+0.8
2,495,033	-		GFF2471	0.12	-1.0
2,495,090	+		GFF2471	0.14	+0.1
2,495,090	+		GFF2471	0.14	-2.3
2,495,096	+		GFF2471	0.15	+0.0
2,495,096	+		GFF2471	0.15	+0.3
2,495,096	+		GFF2471	0.15	-1.3
2,495,096	+		GFF2471	0.15	-0.5
2,495,096	+		GFF2471	0.15	-0.7
2,495,096	+		GFF2471	0.15	+0.3
2,495,096	+		GFF2471	0.15	-0.2
2,495,096	+		GFF2471	0.15	-1.8
2,495,096	+		GFF2471	0.15	+0.2
2,495,101	+		GFF2471	0.15	+0.5
2,495,104	-		GFF2471	0.15	-1.3
2,495,104	-		GFF2471	0.15	-0.4
2,495,104	-		GFF2471	0.15	-0.7
2,495,104	-		GFF2471	0.15	-1.5
2,495,104	-		GFF2471	0.15	+1.0
2,495,104	-		GFF2471	0.15	-0.2
2,495,104	-		GFF2471	0.15	+0.5
2,495,104	-		GFF2471	0.15	-0.1
2,495,114	-		GFF2471	0.16	-1.0
2,495,121	+		GFF2471	0.16	+0.2
2,495,129	+		GFF2471	0.16	-1.4
2,495,129	+		GFF2471	0.16	+0.0
2,495,129	+		GFF2471	0.16	+0.1
2,495,134	+		GFF2471	0.16	-0.7
2,495,137	-		GFF2471	0.17	-0.2
2,495,142	-		GFF2471	0.17	-1.6
2,495,142	-		GFF2471	0.17	-1.6
2,495,174	-		GFF2471	0.18	-0.3
2,495,181	+		GFF2471	0.19	-0.5
2,495,181	+		GFF2471	0.19	+0.8
2,495,198	+		GFF2471	0.19	-2.0
2,495,206	+		GFF2471	0.20	-0.6
2,495,235	+		GFF2471	0.21	-1.4
2,495,235	+		GFF2471	0.21	+1.6
2,495,243	-		GFF2471	0.22	-0.1
2,495,248	-		GFF2471	0.22	+2.3
2,495,266	+		GFF2471	0.23	-0.4
2,495,266	+		GFF2471	0.23	+0.8
2,495,268	-		GFF2471	0.23	-0.4
2,495,274	-		GFF2471	0.23	-1.6
2,495,274	-		GFF2471	0.23	+0.2
2,495,274	-		GFF2471	0.23	-1.8
2,495,339	+		GFF2471	0.26	-0.1
2,495,342	-		GFF2471	0.26	-1.8
2,495,365	-		GFF2471	0.27	-0.7
2,495,365	-		GFF2471	0.27	+0.1
2,495,395	+		GFF2471	0.29	-0.2
2,495,395	+		GFF2471	0.29	+0.7
2,495,454	-		GFF2471	0.31	-1.8
2,495,471	+		GFF2471	0.32	-1.8
2,495,471	+		GFF2471	0.32	+0.4
2,495,481	+		GFF2471	0.33	+0.8
2,495,489	-		GFF2471	0.33	+0.6
2,495,544	+		GFF2471	0.36	-1.2
2,495,584	+		GFF2471	0.37	-0.1
2,495,587	-		GFF2471	0.38	-0.5
2,495,592	-		GFF2471	0.38	-0.9
2,495,592	-		GFF2471	0.38	+0.4
2,495,599	+		GFF2471	0.38	-1.2
2,495,607	-		GFF2471	0.39	-0.7
2,495,627	+		GFF2471	0.40	+1.0
2,495,633	+		GFF2471	0.40	-1.9
2,495,634	+		GFF2471	0.40	+0.5
2,495,634	+		GFF2471	0.40	+0.9
2,495,634	+		GFF2471	0.40	-2.1
2,495,642	-		GFF2471	0.40	+0.6
2,495,649	-		GFF2471	0.41	-0.5
2,495,649	-		GFF2471	0.41	-1.4
2,495,656	+		GFF2471	0.41	+0.7
2,495,664	+		GFF2471	0.41	-0.3
2,495,664	+		GFF2471	0.41	+0.5
2,495,669	+		GFF2471	0.41	+0.4
2,495,672	-		GFF2471	0.42	-1.3
2,495,672	-		GFF2471	0.42	+0.6
2,495,672	-		GFF2471	0.42	-0.3
2,495,683	+		GFF2471	0.42	-1.3
2,495,683	+		GFF2471	0.42	+0.9
2,495,690	+		GFF2471	0.42	-0.7
2,495,698	-		GFF2471	0.43	+1.5
2,495,736	-		GFF2471	0.45	-0.3
2,495,747	+		GFF2471	0.45	+1.1
2,495,752	+		GFF2471	0.45	-0.5
2,495,755	-		GFF2471	0.45	-1.1
2,495,793	-		GFF2471	0.47	+0.2
2,495,807	+		GFF2471	0.48	+1.0
2,495,807	+		GFF2471	0.48	+0.5
2,495,810	-		GFF2471	0.48	-0.2
2,495,815	-		GFF2471	0.48	-1.9
2,495,847	+		GFF2471	0.50	+0.3
2,495,855	-		GFF2471	0.50	-0.2
2,495,865	-		GFF2471	0.51	-1.4
2,495,867	+		GFF2471	0.51	-1.4
2,495,867	+		GFF2471	0.51	+1.4
2,495,869	-		GFF2471	0.51	-1.2
2,495,872	+		GFF2471	0.51	+0.3
2,495,872	+		GFF2471	0.51	-1.8
2,495,878	+		GFF2471	0.51	-1.5
2,495,886	-		GFF2471	0.52	+0.2
2,495,899	+		GFF2471	0.52	-2.5
2,495,903	+		GFF2471	0.52	+0.8
2,495,903	+		GFF2471	0.52	-1.2
2,495,906	-		GFF2471	0.53	+0.7
2,495,907	-		GFF2471	0.53	-2.6
2,495,907	-		GFF2471	0.53	-1.1
2,495,919	+		GFF2471	0.53	-1.6
2,495,919	+		GFF2471	0.53	-0.4
2,495,919	+		GFF2471	0.53	+0.5
2,495,927	-		GFF2471	0.54	-2.1
2,495,927	-		GFF2471	0.54	+0.0
2,495,938	+		GFF2471	0.54	+1.8
2,495,944	+		GFF2471	0.54	-0.4
2,495,964	+		GFF2471	0.55	-1.9
2,495,966	-		GFF2471	0.55	+1.4
2,495,972	-		GFF2471	0.56	+0.9
2,496,002	-		GFF2471	0.57	-1.4
2,496,021	+		GFF2471	0.58	-0.6
2,496,034	-		GFF2471	0.59	-0.3
2,496,039	-		GFF2471	0.59	+0.2
2,496,056	+		GFF2471	0.60	-1.0
2,496,056	+		GFF2471	0.60	-0.1
2,496,056	+		GFF2471	0.60	+0.3
2,496,066	+		GFF2471	0.60	+0.0
2,496,066	+		GFF2471	0.60	-0.3
2,496,066	+		GFF2471	0.60	-1.9
2,496,080	-		GFF2471	0.61	+0.2
2,496,085	+		GFF2471	0.61	-0.3
2,496,094	+		GFF2471	0.61	+1.3
2,496,099	-		GFF2471	0.62	-0.7
2,496,101	+		GFF2471	0.62	-0.5
2,496,101	+		GFF2471	0.62	+0.4
2,496,102	-		GFF2471	0.62	-0.4
2,496,102	-		GFF2471	0.62	-0.3
2,496,106	+		GFF2471	0.62	-0.1
2,496,109	-		GFF2471	0.62	-0.2
2,496,109	-		GFF2471	0.62	+0.6
2,496,111	+		GFF2471	0.62	+0.6
2,496,111	+		GFF2471	0.62	-0.3
2,496,119	-		GFF2471	0.63	+1.1
2,496,126	+		GFF2471	0.63	+0.7
2,496,127	-		GFF2471	0.63	-2.2
2,496,127	-		GFF2471	0.63	-1.5
2,496,132	-		GFF2471	0.63	-0.2
2,496,134	+		GFF2471	0.63	+0.8
2,496,134	+		GFF2471	0.63	-0.4
2,496,160	+		GFF2471	0.64	+0.5
2,496,165	-		GFF2471	0.65	-0.3
2,496,188	+		GFF2471	0.66	-0.8
2,496,188	+		GFF2471	0.66	+0.8
2,496,188	+		GFF2471	0.66	+0.4
2,496,188	+		GFF2471	0.66	-0.5
2,496,188	+		GFF2471	0.66	+1.1
2,496,188	+		GFF2471	0.66	-2.4
2,496,188	+		GFF2471	0.66	+1.1
2,496,196	-		GFF2471	0.66	-0.3
2,496,196	-		GFF2471	0.66	+0.7
2,496,196	-		GFF2471	0.66	-1.1
2,496,196	-		GFF2471	0.66	-0.4
2,496,196	-		GFF2471	0.66	+0.2
2,496,196	-		GFF2471	0.66	-0.8
2,496,196	-		GFF2471	0.66	+0.3
2,496,196	-		GFF2471	0.66	+0.5
2,496,196	-		GFF2471	0.66	-1.8
2,496,206	-		GFF2471	0.67	-0.8
2,496,294	-		GFF2471	0.71	+0.0
2,496,295	+		GFF2471	0.71	+1.0
2,496,328	-		GFF2471	0.72	-0.7
2,496,330	+		GFF2471	0.72	-1.2
2,496,338	-		GFF2471	0.73	-1.5
2,496,338	-		GFF2471	0.73	+0.9
2,496,338	-		GFF2471	0.73	+0.4
2,496,372	+		GFF2471	0.74	-1.2
2,496,372	+		GFF2471	0.74	-2.1
2,496,377	+		GFF2471	0.75	+0.8
2,496,385	-		GFF2471	0.75	+0.8
2,496,391	+		GFF2471	0.75	-0.5
2,496,396	+		GFF2471	0.75	+1.6
2,496,399	-		GFF2471	0.76	+0.9
2,496,409	-		GFF2471	0.76	-0.6
2,496,414	-		GFF2471	0.76	+0.6
2,496,451	+		GFF2471	0.78	+0.9
2,496,469	+		GFF2471	0.79	+0.8
2,496,477	-		GFF2471	0.79	-0.6
2,496,477	-		GFF2471	0.79	+0.3
2,496,477	-		GFF2471	0.79	+1.8
2,496,579	+		GFF2471	0.84	-0.9
2,496,590	+		GFF2471	0.85	-0.3
2,496,610	-		GFF2471	0.85	-0.2
2,496,620	+		GFF2471	0.86	-1.3
2,496,621	+		GFF2471	0.86	+0.7
2,496,621	+		GFF2471	0.86	-0.4
2,496,621	+		GFF2471	0.86	-0.7
2,496,621	+		GFF2471	0.86	+1.6
2,496,621	+		GFF2471	0.86	+1.0
2,496,621	+		GFF2471	0.86	-1.1
2,496,621	+		GFF2471	0.86	+0.4
2,496,628	-		GFF2471	0.86	-1.3
2,496,629	-		GFF2471	0.86	-0.8
2,496,629	-		GFF2471	0.86	+0.2
2,496,629	-		GFF2471	0.86	-1.5
2,496,629	-		GFF2471	0.86	+0.6
2,496,629	-		GFF2471	0.86	-0.7
2,496,629	-		GFF2471	0.86	-1.4
2,496,629	-		GFF2471	0.86	-0.4
2,496,629	-		GFF2471	0.86	-2.1
2,496,631	-		GFF2471	0.86	-1.0
2,496,633	-		GFF2471	0.87	+0.9
2,496,636	+		GFF2471	0.87	-0.7
2,496,648	-		GFF2471	0.87	-0.1
2,496,703	+		GFF2471	0.90	-1.4
2,496,725	+				-0.4
2,496,733	-				-0.1
2,496,743	+				+0.6
2,496,748	+				-0.2
2,496,748	+				-0.1
2,496,748	+				-0.2
2,496,748	+				+0.0
2,496,753	+				-0.1
2,496,753	+				-0.3
2,496,753	+				-1.0
2,496,753	+				-0.2
2,496,756	-				-1.7
2,496,756	-				+1.3
2,496,756	-				-0.1
2,496,756	-				+0.2
2,496,761	-				+0.6
2,496,761	-				+0.2
2,496,761	-				+0.3
2,496,761	-				+0.9
2,496,766	-				-0.4
2,496,766	-				-1.3
2,496,766	-				-0.1
2,496,770	+				-1.5
2,496,827	+				+0.2
2,496,854	+				-1.3
2,496,854	+				-1.4
2,496,862	-				+0.5
2,496,862	-				-1.3
2,496,865	+				-0.1
2,496,870	+				-1.3
2,496,870	+				-0.1
2,496,870	+				-0.1
2,496,878	+				-1.8
2,496,878	-				+0.1
2,496,878	-				+1.4
2,496,888	+				-0.6
2,496,895	+				-1.4
2,496,896	-				-1.6
2,496,896	-				-2.3
2,496,896	-				-0.3
2,496,896	-				-0.2
2,496,903	-				-0.1
2,496,907	-				-0.9
2,496,932	+				+0.4
2,496,940	-				+1.4
2,496,947	-				-0.2
2,496,956	+				+0.6
2,496,960	+				-0.8
2,496,961	+				-0.8
2,496,961	+				+0.5
2,496,964	-				+0.7
2,496,964	-				-0.5
2,496,966	+				-0.8
2,496,969	-				-1.5
2,496,980	+				-1.1
2,497,039	-				-0.0
2,497,069	+				+0.9
2,497,069	+				+0.2
2,497,070	+				+0.8
2,497,070	+				-0.4
2,497,070	+				+0.9
2,497,070	+				-1.8
2,497,078	-				-0.3
2,497,078	-				+1.4
2,497,078	-				-0.3
2,497,104	+		GFF2472	0.12	-0.3
2,497,109	+		GFF2472	0.12	+0.9
2,497,147	-		GFF2472	0.14	-2.3
2,497,170	-		GFF2472	0.16	-0.5
2,497,189	-		GFF2472	0.17	-0.7
2,497,213	+		GFF2472	0.19	+0.6
2,497,221	-		GFF2472	0.19	+0.2
2,497,221	-		GFF2472	0.19	-1.3
2,497,221	-		GFF2472	0.19	-0.1
2,497,221	-		GFF2472	0.19	+1.1
2,497,231	-		GFF2472	0.20	+0.4
2,497,251	+		GFF2472	0.21	-1.3
2,497,284	+		GFF2472	0.23	-0.1
2,497,284	+		GFF2472	0.23	+0.4
2,497,292	-		GFF2472	0.24	-1.1
2,497,306	+		GFF2472	0.25	+1.8
2,497,308	+		GFF2472	0.25	+1.4
2,497,314	-		GFF2472	0.25	-0.5
2,497,316	-		GFF2472	0.25	+0.8
2,497,316	-		GFF2472	0.25	-1.1
2,497,316	-		GFF2472	0.25	+0.4
2,497,316	-		GFF2472	0.25	-0.1
2,497,334	+		GFF2472	0.27	+0.6
2,497,361	-		GFF2472	0.28	+0.6
2,497,403	+		GFF2472	0.31	-1.2
2,497,403	+		GFF2472	0.31	+0.0
2,497,403	+		GFF2472	0.31	+0.5
2,497,403	+		GFF2472	0.31	+0.8
2,497,403	+		GFF2472	0.31	-0.8
2,497,403	+		GFF2472	0.31	-1.4
2,497,403	+		GFF2472	0.31	-1.8
2,497,403	+		GFF2472	0.31	-2.3
2,497,408	+		GFF2472	0.31	+0.9
2,497,411	-		GFF2472	0.32	+0.1
2,497,411	-		GFF2472	0.32	-0.5
2,497,411	-		GFF2472	0.32	+0.6
2,497,411	-		GFF2472	0.32	-0.4
2,497,411	-		GFF2472	0.32	-0.2
2,497,411	-		GFF2472	0.32	+0.3
2,497,411	-		GFF2472	0.32	+0.2
2,497,416	-		GFF2472	0.32	-0.1
2,497,416	-		GFF2472	0.32	+0.9
2,497,421	-		GFF2472	0.32	-0.4
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