Strain Fitness in Sphingobium sp. HT1-2 around GFF2387

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,407,054	-		GFF2385	0.41	-0.1
2,407,054	-		GFF2385	0.41	-1.3
2,407,059	-		GFF2385	0.42	-1.8
2,407,059	-		GFF2385	0.42	+0.7
2,407,098	+		GFF2385	0.47	-0.0
2,407,107	-		GFF2385	0.48	+0.7
2,407,114	+		GFF2385	0.49	+0.8
2,407,122	-		GFF2385	0.50	-0.9
2,407,127	-		GFF2385	0.50	-0.6
2,407,137	+		GFF2385	0.51	-1.4
2,407,172	+		GFF2385	0.56	-0.1
2,407,192	-		GFF2385	0.58	+0.5
2,407,222	+		GFF2385	0.62	-0.3
2,407,222	+		GFF2385	0.62	+0.5
2,407,225	-		GFF2385	0.62	-1.0
2,407,225	-		GFF2385	0.62	-0.6
2,407,230	-		GFF2385	0.63	+0.1
2,407,230	-		GFF2385	0.63	-1.3
2,407,239	-		GFF2385	0.64	+0.8
2,407,267	+		GFF2385	0.67	-1.1
2,407,269	-		GFF2385	0.67	-0.2
2,407,272	+		GFF2385	0.68	-0.5
2,407,275	-		GFF2385	0.68	-1.9
2,407,277	+		GFF2385	0.68	-0.4
2,407,277	+		GFF2385	0.68	-0.5
2,407,277	+		GFF2385	0.68	-0.9
2,407,277	+		GFF2385	0.68	+0.4
2,407,354	-		GFF2385	0.77	+0.1
2,407,374	-		GFF2385	0.80	-1.1
2,407,381	+		GFF2385	0.81	-0.7
2,407,382	+		GFF2385	0.81	+1.0
2,407,388	+		GFF2385	0.82	-0.6
2,407,389	-		GFF2385	0.82	-1.8
2,407,389	-		GFF2385	0.82	-2.9
2,407,396	+		GFF2385	0.82	-1.2
2,407,410	+		GFF2385	0.84	-0.8
2,407,411	-		GFF2385	0.84	-2.4
2,407,418	-		GFF2385	0.85	+0.6
2,407,553	-				-1.9
2,407,986	+				-0.8
2,407,987	+				+0.0
2,407,999	-				-0.6
2,408,051	+				-0.3
2,408,051	+				-0.4
2,408,051	+				+0.9
2,408,051	+				-0.3
2,408,059	-				+1.0
2,408,059	-				-0.4
2,408,072	+				-1.0
2,408,080	-				+0.4
2,408,101	-				+0.6
2,408,146	-				-0.1
2,408,157	+				-0.2
2,408,194	+				-0.1
2,408,194	-				-0.5
2,408,201	+				-0.2
2,408,215	-				-0.2
2,408,237	+				-1.4
2,408,242	+		GFF2387	0.10	-0.3
2,408,260	-		GFF2387	0.11	-0.5
2,408,265	+		GFF2387	0.12	-1.3
2,408,265	+		GFF2387	0.12	+0.7
2,408,273	-		GFF2387	0.12	-1.9
2,408,275	+		GFF2387	0.12	+0.7
2,408,283	-		GFF2387	0.12	-0.6
2,408,283	-		GFF2387	0.12	-1.2
2,408,288	+		GFF2387	0.13	-0.2
2,408,307	+		GFF2387	0.14	-1.4
2,408,365	-		GFF2387	0.17	-1.5
2,408,374	-		GFF2387	0.17	+0.1
2,408,388	+		GFF2387	0.18	+0.2
2,408,398	-		GFF2387	0.19	-0.3
2,408,438	+		GFF2387	0.21	-1.6
2,408,446	-		GFF2387	0.21	-1.0
2,408,514	-		GFF2387	0.25	+0.1
2,408,514	-		GFF2387	0.25	-0.6
2,408,568	+		GFF2387	0.28	-0.2
2,408,568	+		GFF2387	0.28	-0.4
2,408,568	+		GFF2387	0.28	-2.0
2,408,573	+		GFF2387	0.28	+1.9
2,408,576	-		GFF2387	0.28	+0.8
2,408,576	-		GFF2387	0.28	+0.7
2,408,576	-		GFF2387	0.28	+0.6
2,408,576	-		GFF2387	0.28	+0.4
2,408,576	-		GFF2387	0.28	+0.2
2,408,576	-		GFF2387	0.28	+0.4
2,408,576	-		GFF2387	0.28	+0.0
2,408,612	+		GFF2387	0.30	-0.1
2,408,639	-		GFF2387	0.32	-1.2
2,408,643	-		GFF2387	0.32	-0.6
2,408,658	-		GFF2387	0.33	-0.9
2,408,668	-		GFF2387	0.33	+1.1
2,408,672	+		GFF2387	0.34	+0.3
2,408,722	-		GFF2387	0.36	-0.7
2,408,736	+		GFF2387	0.37	-1.4
2,408,736	+		GFF2387	0.37	-2.0
2,408,744	-		GFF2387	0.38	-1.6
2,408,744	-		GFF2387	0.38	-0.6
2,408,747	+		GFF2387	0.38	-2.1
2,408,777	+		GFF2387	0.39	+0.2
2,408,785	-		GFF2387	0.40	-1.3
2,408,787	+		GFF2387	0.40	-0.4
2,408,802	+		GFF2387	0.41	+0.2
2,408,802	+		GFF2387	0.41	+0.7
2,408,853	+		GFF2387	0.43	-1.2
2,408,853	+		GFF2387	0.43	-1.2
2,408,858	+		GFF2387	0.44	-0.8
2,408,858	+		GFF2387	0.44	-1.0
2,408,866	-		GFF2387	0.44	-0.3
2,408,866	-		GFF2387	0.44	+0.4
2,408,891	+		GFF2387	0.45	+0.7
2,408,892	-		GFF2387	0.46	-0.2
2,408,899	-		GFF2387	0.46	-1.4
2,408,917	-		GFF2387	0.47	+0.3
2,408,922	-		GFF2387	0.47	-1.7
2,408,928	-		GFF2387	0.48	+1.5
2,408,958	+		GFF2387	0.49	-1.9
2,408,981	+		GFF2387	0.50	-1.1
2,408,989	-		GFF2387	0.51	-0.9
2,408,996	+		GFF2387	0.51	+0.1
2,409,046	-		GFF2387	0.54	+1.6
2,409,048	+		GFF2387	0.54	+0.2
2,409,135	-		GFF2387	0.59	+1.2
2,409,151	+		GFF2387	0.60	+0.3
2,409,159	-		GFF2387	0.60	-1.9
2,409,189	+		GFF2387	0.62	+0.1
2,409,211	+		GFF2387	0.63	+0.3
2,409,223	-		GFF2387	0.64	-0.2
2,409,251	+		GFF2387	0.65	-1.9
2,409,266	+		GFF2387	0.66	+0.8
2,409,303	+		GFF2387	0.68	-0.4
2,409,349	+		GFF2387	0.70	-1.4
2,409,357	-		GFF2387	0.71	+1.2
2,409,383	+		GFF2387	0.72	-0.6
2,409,419	+		GFF2387	0.74	-1.9
2,409,419	+		GFF2387	0.74	-1.4
2,409,419	+		GFF2387	0.74	-1.8
2,409,427	-		GFF2387	0.75	-2.7
2,409,429	+		GFF2387	0.75	+1.1
2,409,429	+		GFF2387	0.75	+1.2
2,409,429	+		GFF2387	0.75	-0.2
2,409,429	+		GFF2387	0.75	+1.1
2,409,429	+		GFF2387	0.75	-1.6
2,409,432	+		GFF2387	0.75	+0.4
2,409,432	+		GFF2387	0.75	-0.4
2,409,434	+		GFF2387	0.75	-0.7
2,409,434	+		GFF2387	0.75	-2.0
2,409,434	+		GFF2387	0.75	-0.2
2,409,434	+		GFF2387	0.75	-1.2
2,409,437	-		GFF2387	0.75	+0.4
2,409,437	-		GFF2387	0.75	+0.9
2,409,437	-		GFF2387	0.75	+0.3
2,409,437	-		GFF2387	0.75	+0.4
2,409,437	-		GFF2387	0.75	-0.2
2,409,442	-		GFF2387	0.75	+0.8
2,409,552	+		GFF2387	0.81	+0.0
2,409,555	-		GFF2387	0.82	-0.6
2,409,555	-		GFF2387	0.82	+1.6
2,409,555	-		GFF2387	0.82	+0.7
2,409,563	-		GFF2387	0.82	-0.2
2,409,576	+		GFF2387	0.83	+1.2
2,409,576	+		GFF2387	0.83	+0.3
2,409,576	+		GFF2387	0.83	-2.4
2,409,576	+		GFF2387	0.83	+0.1
2,409,584	-		GFF2387	0.83	-0.5
2,409,584	-		GFF2387	0.83	-0.7
2,409,584	-		GFF2387	0.83	-1.0
2,409,587	+		GFF2387	0.83	+0.4
2,409,587	+		GFF2387	0.83	-2.4
2,409,587	+		GFF2387	0.83	-1.5
2,409,587	+		GFF2387	0.83	+0.5
2,409,595	-		GFF2387	0.84	-0.7
2,409,595	-		GFF2387	0.84	+0.3
2,409,595	-		GFF2387	0.84	-2.3
2,409,600	-		GFF2387	0.84	+1.4
2,409,605	-		GFF2387	0.84	-2.0
2,409,605	-		GFF2387	0.84	-0.8
2,409,605	-		GFF2387	0.84	-3.0
2,409,616	-		GFF2387	0.85	+1.6
2,409,646	+		GFF2387	0.86	+0.1
2,409,646	+		GFF2387	0.86	-1.4
2,409,648	-		GFF2387	0.87	+0.2
2,409,654	-		GFF2387	0.87	+0.5
2,409,654	-		GFF2387	0.87	+0.6
2,409,654	-		GFF2387	0.87	-0.4
2,409,654	-		GFF2387	0.87	+0.6
2,409,682	-		GFF2387	0.88	-0.5
2,409,692	+		GFF2387	0.89	-0.3
2,409,714	+				-0.8
2,409,750	-				-0.8
2,409,773	-				+0.6
2,409,777	-				-1.4
2,409,796	+				-0.4
2,409,804	+				-2.1
2,409,809	+				-2.0
2,409,884	+				-0.6
2,409,888	+				+0.2
2,409,896	-				-0.3
2,409,898	+				-0.3
2,409,910	+				+1.4
2,409,918	+				-0.2
2,409,918	+				-1.9
2,409,918	+				-0.0
2,409,924	-				-1.5
2,409,924	-				-0.4
2,409,926	-				+0.5
2,409,926	-				+0.8
2,409,926	-				+0.0
2,409,936	-				-0.2
2,409,943	-				-0.8
2,409,946	-				-0.8
2,409,962	+				-1.6
2,409,970	-				+0.2
2,409,973	+				+0.5
2,409,996	+				+1.1
2,410,017	-		GFF2388	0.15	-0.4
2,410,017	-		GFF2388	0.15	-0.4
2,410,036	+		GFF2388	0.19	+0.2
2,410,054	+		GFF2388	0.24	+0.5
2,410,112	+		GFF2388	0.38	+0.8
2,410,115	-		GFF2388	0.38	-0.6
2,410,148	+		GFF2388	0.46	-0.1
2,410,212	+		GFF2388	0.62	+0.5
2,410,219	+		GFF2388	0.64	-1.2
2,410,219	+		GFF2388	0.64	-0.9
2,410,222	+		GFF2388	0.64	+0.4
2,410,227	+		GFF2388	0.66	+0.2
2,410,227	-		GFF2388	0.66	-2.1
2,410,227	-		GFF2388	0.66	+0.7
2,410,227	-		GFF2388	0.66	+0.1
2,410,227	-		GFF2388	0.66	-0.6
2,410,232	+		GFF2388	0.67	-0.9
2,410,235	-		GFF2388	0.68	-0.3
2,410,240	-		GFF2388	0.69	-1.2
2,410,269	+		GFF2388	0.76	-0.2
2,410,295	+		GFF2388	0.82	-1.4
2,410,297	+		GFF2388	0.83	-0.2
2,410,311	-		GFF2388	0.86	-0.4
2,410,312	+		GFF2388	0.86	+0.3
2,410,313	-		GFF2388	0.87	+0.1
2,410,339	+				+0.1
2,410,339	+				-0.2
2,410,339	+				-1.2
2,410,339	+				-1.2
2,410,344	-				+0.4
2,410,345	-				-0.7
2,410,347	-				-0.3
2,410,347	-				+0.9
2,410,349	-				-0.1
2,410,361	+				-1.5
2,410,362	+				-0.5
2,410,369	-				+0.8
2,410,381	+				-0.7
2,410,389	-				+0.3
2,410,413	+				-0.4
2,410,426	+				-2.0
2,410,431	+				-1.7
2,410,437	+				+2.3
2,410,445	-				+1.0
2,410,445	-				+0.0
2,410,445	-				+0.4
2,410,445	-				+1.0
2,410,445	-				+1.2
2,410,445	-				-1.4
2,410,448	-				+1.0
2,410,449	-				+0.1
2,410,453	-				+1.2
2,410,461	-				-1.2
2,410,545	+		GFF2389	0.11	-0.8
2,410,552	+		GFF2389	0.11	-2.2
2,410,552	-		GFF2389	0.11	-0.9
2,410,553	-		GFF2389	0.12	-0.9
2,410,560	-		GFF2389	0.12	-1.1
2,410,560	-		GFF2389	0.12	+0.2
2,410,570	-		GFF2389	0.13	-1.4
2,410,638	+		GFF2389	0.17	-0.4
2,410,690	+		GFF2389	0.20	-1.2
2,410,728	-		GFF2389	0.22	+0.6
2,410,783	-		GFF2389	0.26	-1.5
2,410,804	+		GFF2389	0.27	-0.5
2,410,805	-		GFF2389	0.27	+0.4