Strain Fitness in Sphingobium sp. HT1-2 around GFF2337

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,359,877	+		GFF2335	0.54	-0.3
2,359,885	-		GFF2335	0.55	-0.8
2,359,885	-		GFF2335	0.55	+0.3
2,359,885	-		GFF2335	0.55	+1.5
2,359,892	-		GFF2335	0.55	-0.4
2,359,907	+		GFF2335	0.57	+0.0
2,359,970	+		GFF2335	0.63	-1.2
2,359,978	-		GFF2335	0.64	-0.8
2,360,014	-		GFF2335	0.67	-1.6
2,360,014	-		GFF2335	0.67	+0.5
2,360,033	+		GFF2335	0.69	+0.1
2,360,038	+		GFF2335	0.69	+1.7
2,360,041	-		GFF2335	0.70	+1.8
2,360,046	-		GFF2335	0.70	+0.9
2,360,046	-		GFF2335	0.70	-0.8
2,360,046	-		GFF2335	0.70	+1.0
2,360,051	+		GFF2335	0.71	+0.6
2,360,080	+		GFF2335	0.74	-1.1
2,360,080	+		GFF2335	0.74	-1.2
2,360,080	+		GFF2335	0.74	+1.1
2,360,082	+		GFF2335	0.74	-1.4
2,360,088	-		GFF2335	0.74	-0.3
2,360,088	-		GFF2335	0.74	+1.8
2,360,088	-		GFF2335	0.74	+0.4
2,360,192	-		GFF2335	0.84	+0.2
2,360,192	-		GFF2335	0.84	+0.8
2,360,195	-		GFF2335	0.85	+0.7
2,360,210	+		GFF2335	0.86	-0.2
2,360,210	+		GFF2335	0.86	-0.2
2,360,214	+		GFF2335	0.87	+0.2
2,360,218	-		GFF2335	0.87	+0.7
2,360,243	-		GFF2335	0.89	-1.5
2,360,247	-		GFF2335	0.90	-0.8
2,360,249	+				-0.6
2,360,249	+				+0.2
2,360,257	-				-0.5
2,360,282	+				-2.2
2,360,282	+				-0.7
2,360,290	-				-0.2
2,360,332	+				+0.5
2,360,332	+				-0.1
2,360,337	+				+1.2
2,360,340	-				+0.8
2,360,340	-				-0.0
2,360,340	-				-0.5
2,360,348	-				-0.0
2,360,350	-				+1.6
2,360,353	+				+0.6
2,360,353	+				+1.1
2,360,353	+				-1.0
2,360,353	+				-0.6
2,360,353	+				+1.0
2,360,358	+				+0.0
2,360,361	-				-1.2
2,360,361	-				-2.8
2,360,361	-				+0.6
2,360,366	-				-0.4
2,360,448	+				+0.8
2,360,448	+				+0.8
2,360,448	+				-0.2
2,360,448	+				-0.0
2,360,450	-				-0.3
2,360,456	-				-1.1
2,360,490	-		GFF2336	0.18	+0.4
2,360,525	-		GFF2336	0.28	-0.1
2,360,555	+		GFF2336	0.37	+1.2
2,360,555	+		GFF2336	0.37	-1.5
2,360,562	+		GFF2336	0.39	+0.3
2,360,562	+		GFF2336	0.39	+0.3
2,360,562	+		GFF2336	0.39	-1.9
2,360,562	+		GFF2336	0.39	+0.2
2,360,562	+		GFF2336	0.39	+1.0
2,360,570	-		GFF2336	0.42	-0.2
2,360,570	-		GFF2336	0.42	+0.2
2,360,570	-		GFF2336	0.42	-0.6
2,360,601	+		GFF2336	0.51	-0.7
2,360,609	-		GFF2336	0.53	+0.4
2,360,616	+		GFF2336	0.55	-2.0
2,360,635	+		GFF2336	0.61	-0.4
2,360,666	+		GFF2336	0.70	+0.2
2,360,706	+		GFF2336	0.82	-0.6
2,360,706	+		GFF2336	0.82	-1.5
2,360,711	+		GFF2336	0.83	-2.2
2,360,719	-		GFF2336	0.86	+0.3
2,360,721	+		GFF2336	0.86	-2.2
2,360,724	+		GFF2336	0.87	-0.0
2,360,724	-		GFF2336	0.87	-2.0
2,360,729	-		GFF2336	0.88	-1.5
2,360,736	-				+0.9
2,360,754	+				-0.5
2,360,759	+				+0.4
2,360,762	-				-2.8
2,360,762	-				+0.6
2,360,762	-				-2.2
2,360,764	+				-0.8
2,360,767	-				+1.0
2,360,840	+				-0.4
2,360,866	-				-0.4
2,360,881	+				-2.0
2,360,886	+				-1.4
2,360,886	+				-1.6
2,360,889	-				+0.6
2,360,889	-				-2.5
2,360,894	-				-0.1
2,360,894	-				-0.1
2,362,962	+				-1.4
2,362,991	-		GFF2338	0.11	-0.6
2,362,993	+		GFF2338	0.12	+0.5
2,363,115	+		GFF2338	0.76	-1.3
2,363,115	+		GFF2338	0.76	-2.0
2,363,115	+		GFF2338	0.76	-2.2
2,363,115	+		GFF2338	0.76	+0.8
2,363,115	+		GFF2338	0.76	-2.0
2,363,115	+		GFF2338	0.76	-0.4
2,363,115	+		GFF2338	0.76	-1.6
2,363,115	+		GFF2338	0.76	-0.7
2,363,115	+		GFF2338	0.76	-2.2
2,363,123	-		GFF2338	0.80	-1.7
2,363,123	-		GFF2338	0.80	+0.3
2,363,123	-		GFF2338	0.80	+0.8
2,363,123	-		GFF2338	0.80	+0.9
2,363,123	-		GFF2338	0.80	-1.8
2,363,123	-		GFF2338	0.80	+0.0
2,363,123	-		GFF2338	0.80	+0.1
2,363,123	-		GFF2338	0.80	-1.4
2,363,123	-		GFF2338	0.80	-0.2
2,363,123	-		GFF2338	0.80	-1.0
2,363,123	-		GFF2338	0.80	-0.3
2,363,123	-		GFF2338	0.80	-1.2
2,363,123	-		GFF2338	0.80	+0.6
2,363,123	-		GFF2338	0.80	-1.4
2,363,123	-		GFF2338	0.80	-0.1
2,363,123	-		GFF2338	0.80	+0.2
2,363,147	+				+0.4
2,363,149	+				-1.2
2,363,149	+				-1.0
2,363,156	+				-0.0
2,363,157	-				+0.6
2,363,162	-				-0.3
2,363,169	-				-0.5
2,363,173	+				-1.4
2,363,181	-				-1.4
2,363,181	-				-0.4
2,363,193	+				+1.0
2,363,201	-				-0.2
2,363,201	-				+1.2
2,363,257	-				+0.3
2,363,283	+		GFF2339	0.15	-0.1
2,363,350	+		GFF2339	0.33	+2.0
2,363,350	+		GFF2339	0.33	-0.6
2,363,358	-		GFF2339	0.35	+0.8
2,363,358	-		GFF2339	0.35	-0.2
2,363,359	-		GFF2339	0.35	+0.6
2,363,364	-		GFF2339	0.37	+0.3
2,363,373	-		GFF2339	0.39	-0.8
2,363,405	+		GFF2339	0.47	+0.6
2,363,413	-		GFF2339	0.50	+0.7
2,363,413	-		GFF2339	0.50	+0.9
2,363,427	-		GFF2339	0.53	-1.7
2,363,575	+				-0.8
2,363,575	+				-0.1
2,363,603	+				-1.8
2,363,603	+				-0.9
2,363,611	-				+1.1
2,363,611	-				-0.0
2,363,611	-				-0.6
2,363,611	-				-0.7
2,363,611	-				+0.4
2,363,611	-				-1.5
2,363,615	-				+0.1
2,363,618	-				-2.0
2,363,630	+				+0.6
2,363,630	+				+0.4
2,363,630	+				-2.3
2,363,639	-				+1.1
2,363,641	+				-1.9
2,363,648	+				+0.6
2,363,648	+				+0.5
2,363,649	-				-0.7
2,363,650	+				-0.5
2,363,650	+				+1.1
2,363,656	-				+1.6
2,363,656	-				-0.6
2,363,656	-				+0.3
2,363,656	-				-0.3
2,363,668	-				-0.1
2,363,686	-				+0.6
2,363,686	-				-1.2
2,363,688	+				-0.6
2,363,701	+				-0.6
2,363,706	+				+0.2
2,363,709	+				-1.5
2,363,709	-				-1.1
2,363,754	-				+0.8
2,363,844	+				-0.7
2,363,863	+				+0.0
2,363,864	+				+0.2
2,363,866	-				+0.0
2,363,871	-		GFF2340	0.10	-1.4
2,363,898	-		GFF2340	0.12	-0.6
2,363,900	+		GFF2340	0.12	-2.0
2,363,924	+		GFF2340	0.13	-1.2
2,363,925	+		GFF2340	0.13	-0.9
2,363,932	-		GFF2340	0.14	+0.1
2,363,932	-		GFF2340	0.14	+0.1
2,363,933	-		GFF2340	0.14	-2.3
2,363,939	+		GFF2340	0.14	+0.4
2,363,944	+		GFF2340	0.14	-0.8