Strain Fitness in Sphingobium sp. HT1-2 around GFF2279

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,304,042	-				-1.8
2,304,065	+				+0.4
2,304,073	-		GFF2277	0.12	-0.4
2,304,106	-		GFF2277	0.25	-0.3
2,304,118	+		GFF2277	0.30	+1.6
2,304,119	+		GFF2277	0.30	+0.5
2,304,128	-		GFF2277	0.34	-0.1
2,304,164	+		GFF2277	0.48	+0.3
2,304,164	+		GFF2277	0.48	+0.5
2,304,168	+		GFF2277	0.50	+0.5
2,304,169	+		GFF2277	0.50	+0.5
2,304,172	-		GFF2277	0.51	+0.0
2,304,172	-		GFF2277	0.51	+0.6
2,304,176	-		GFF2277	0.53	-0.6
2,304,176	-		GFF2277	0.53	-0.1
2,304,199	+		GFF2277	0.62	+1.3
2,304,206	+		GFF2277	0.65	-1.3
2,304,214	-		GFF2277	0.68	-0.6
2,304,222	+		GFF2277	0.71	+0.7
2,304,230	-		GFF2277	0.74	-1.9
2,304,246	+		GFF2277	0.81	-0.0
2,304,268	+		GFF2277	0.89	-0.1
2,304,295	-				+0.4
2,304,319	+				-0.7
2,304,327	-				+0.7
2,304,344	-				-1.2
2,304,349	-				-1.1
2,304,349	-				-3.1
2,304,357	+				-1.4
2,304,357	+				+0.8
2,304,357	+				+0.6
2,304,364	+				-0.1
2,304,372	-				+1.1
2,304,415	+				-1.3
2,304,415	+				-1.6
2,304,423	-				+1.3
2,304,423	-				+0.5
2,304,428	+				+0.8
2,304,429	-				-0.8
2,304,449	+				-2.3
2,304,449	-				+0.0
2,304,451	-				+0.6
2,304,451	-				+0.2
2,304,481	-		GFF2278	0.11	-0.2
2,304,486	-		GFF2278	0.12	-0.1
2,304,552	+		GFF2278	0.24	+0.5
2,304,587	+		GFF2278	0.31	-0.4
2,304,598	+		GFF2278	0.33	-0.0
2,304,598	+		GFF2278	0.33	+0.5
2,304,602	+		GFF2278	0.33	+0.6
2,304,610	-		GFF2278	0.35	+0.5
2,304,617	+		GFF2278	0.36	-0.9
2,304,622	+		GFF2278	0.37	-2.1
2,304,625	-		GFF2278	0.38	+0.1
2,304,625	-		GFF2278	0.38	-0.5
2,304,637	-		GFF2278	0.40	-0.1
2,304,642	-		GFF2278	0.41	-1.0
2,304,655	-		GFF2278	0.43	+1.2
2,304,673	+		GFF2278	0.47	-0.2
2,304,678	-		GFF2278	0.48	-2.4
2,304,680	+		GFF2278	0.48	-0.6
2,304,688	+		GFF2278	0.49	-0.4
2,304,688	+		GFF2278	0.49	-0.2
2,304,688	-		GFF2278	0.49	-0.8
2,304,688	-		GFF2278	0.49	-0.4
2,304,696	-		GFF2278	0.51	-1.6
2,304,747	+		GFF2278	0.60	-1.3
2,304,747	+		GFF2278	0.60	-0.1
2,304,747	+		GFF2278	0.60	+0.8
2,304,747	+		GFF2278	0.60	+0.8
2,304,747	+		GFF2278	0.60	+0.8
2,304,747	+		GFF2278	0.60	+0.9
2,304,755	-		GFF2278	0.62	+0.1
2,304,755	-		GFF2278	0.62	+0.4
2,304,755	-		GFF2278	0.62	-0.5
2,304,755	-		GFF2278	0.62	-0.0
2,304,755	-		GFF2278	0.62	+0.4
2,304,771	+		GFF2278	0.65	-0.5
2,304,773	-		GFF2278	0.65	+0.1
2,304,779	-		GFF2278	0.66	-0.3
2,304,779	-		GFF2278	0.66	-3.0
2,304,780	-		GFF2278	0.67	-1.3
2,304,780	-		GFF2278	0.67	+0.3
2,304,815	+		GFF2278	0.73	-0.7
2,304,815	+		GFF2278	0.73	-0.7
2,304,822	+		GFF2278	0.75	+1.2
2,304,822	+		GFF2278	0.75	-0.8
2,304,822	+		GFF2278	0.75	-0.3
2,304,822	+		GFF2278	0.75	+0.3
2,304,822	+		GFF2278	0.75	+1.1
2,304,823	-		GFF2278	0.75	-2.1
2,304,823	-		GFF2278	0.75	-0.6
2,304,823	-		GFF2278	0.75	-0.7
2,304,823	-		GFF2278	0.75	-0.3
2,304,823	-		GFF2278	0.75	-1.4
2,304,823	-		GFF2278	0.75	-0.7
2,304,825	+		GFF2278	0.75	-0.7
2,304,830	-		GFF2278	0.76	-0.6
2,304,850	-		GFF2278	0.80	+0.7
2,304,873	-		GFF2278	0.84	-0.7
2,304,884	+		GFF2278	0.86	-1.0
2,304,885	-		GFF2278	0.86	+0.9
2,304,886	+		GFF2278	0.87	-0.5
2,304,893	+		GFF2278	0.88	+0.5
2,304,893	-		GFF2278	0.88	+1.3
2,304,899	-		GFF2278	0.89	-0.6
2,304,903	-		GFF2278	0.90	+0.2
2,304,936	+				+2.4
2,304,968	+				+0.3
2,304,968	+				-0.5
2,304,986	-				+0.9
2,304,991	+				+0.7
2,304,991	+				-2.1
2,304,999	-				+1.0
2,305,013	+				-0.5
2,305,013	+				-0.4
2,305,021	-				+0.4
2,305,021	-				-0.6
2,305,023	+				-0.2
2,305,052	+				-0.1
2,305,105	+				+0.8
2,305,106	+				-0.5
2,305,106	+				+0.9
2,305,114	-				+0.3
2,305,114	-				-0.9
2,305,114	-				-0.5
2,305,114	-				-1.3
2,305,116	+				-0.4
2,305,120	+				-1.5
2,305,124	-				-0.2
2,305,126	+				-1.9
2,305,128	-				-0.4
2,305,134	-				+0.6
2,305,137	+				-1.1
2,305,144	-				+0.1
2,305,144	-				-0.5
2,305,151	+				+0.6
2,305,153	-				+0.7
2,305,161	+				-3.1
2,305,161	+				-1.0
2,305,161	+				-0.7
2,305,169	-				-0.2
2,305,178	+		GFF2279	0.10	+0.4
2,305,185	-		GFF2279	0.11	-0.3
2,305,202	-		GFF2279	0.12	-0.7
2,305,212	+		GFF2279	0.12	-1.7
2,305,218	+		GFF2279	0.12	+0.0
2,305,229	+		GFF2279	0.13	-0.1
2,305,229	+		GFF2279	0.13	+0.3
2,305,229	+		GFF2279	0.13	-0.3
2,305,237	-		GFF2279	0.14	+0.7
2,305,237	-		GFF2279	0.14	-0.7
2,305,237	-		GFF2279	0.14	+0.9
2,305,265	+		GFF2279	0.15	-0.6
2,305,273	-		GFF2279	0.16	-1.3
2,305,311	+		GFF2279	0.18	+0.1
2,305,328	-		GFF2279	0.19	+0.9
2,305,332	+		GFF2279	0.19	+0.5
2,305,332	+		GFF2279	0.19	-0.1
2,305,332	+		GFF2279	0.19	+0.6
2,305,339	-		GFF2279	0.20	+0.7
2,305,340	-		GFF2279	0.20	+0.3
2,305,340	-		GFF2279	0.20	+1.3
2,305,358	+		GFF2279	0.21	+1.8
2,305,366	-		GFF2279	0.21	+0.1
2,305,407	-		GFF2279	0.23	-0.5
2,305,416	-		GFF2279	0.24	-1.3
2,305,433	+		GFF2279	0.25	+0.8
2,305,452	-		GFF2279	0.26	+0.4
2,305,469	+		GFF2279	0.27	+0.2
2,305,496	+		GFF2279	0.29	-1.2
2,305,501	+		GFF2279	0.29	+0.0
2,305,526	+		GFF2279	0.30	-0.5
2,305,527	-		GFF2279	0.30	-0.7
2,305,534	-		GFF2279	0.31	-1.4
2,305,537	+		GFF2279	0.31	+0.6
2,305,545	-		GFF2279	0.31	-1.8
2,305,545	-		GFF2279	0.31	+0.6
2,305,552	+		GFF2279	0.32	+0.8
2,305,573	+		GFF2279	0.33	+0.4
2,305,595	-		GFF2279	0.34	-1.1
2,305,595	-		GFF2279	0.34	-1.0
2,305,603	-		GFF2279	0.35	+0.8
2,305,606	+		GFF2279	0.35	-2.0
2,305,614	-		GFF2279	0.35	+0.2
2,305,614	-		GFF2279	0.35	-0.7
2,305,615	+		GFF2279	0.36	-1.3
2,305,628	+		GFF2279	0.36	-2.1
2,305,656	+		GFF2279	0.38	+1.1
2,305,657	+		GFF2279	0.38	+0.1
2,305,664	-		GFF2279	0.38	+0.8
2,305,665	-		GFF2279	0.38	-0.8
2,305,717	+		GFF2279	0.41	-0.3
2,305,717	-		GFF2279	0.41	+0.3
2,305,730	-		GFF2279	0.42	-0.7
2,305,784	+		GFF2279	0.45	+0.4
2,305,784	-		GFF2279	0.45	-0.9
2,305,794	-		GFF2279	0.46	-0.6
2,305,835	+		GFF2279	0.48	-0.2
2,305,858	-		GFF2279	0.50	+0.7
2,305,858	-		GFF2279	0.50	-1.7
2,305,866	-		GFF2279	0.50	-1.6
2,305,866	-		GFF2279	0.50	-0.7
2,305,868	+		GFF2279	0.50	+1.2
2,305,874	+		GFF2279	0.51	+1.1
2,305,874	+		GFF2279	0.51	+0.2
2,305,876	-		GFF2279	0.51	-2.1
2,305,876	-		GFF2279	0.51	+0.7
2,305,903	+		GFF2279	0.52	+0.3
2,305,913	+		GFF2279	0.53	-1.3
2,305,921	-		GFF2279	0.53	+0.8
2,305,925	+		GFF2279	0.54	-1.2
2,305,925	-		GFF2279	0.54	+0.2
2,305,944	+		GFF2279	0.55	-2.1
2,305,952	-		GFF2279	0.55	+0.8
2,305,954	+		GFF2279	0.55	-0.4
2,305,954	+		GFF2279	0.55	+0.1
2,305,954	+		GFF2279	0.55	-0.7
2,305,957	-		GFF2279	0.55	+0.8
2,305,962	-		GFF2279	0.56	-1.3
2,305,962	-		GFF2279	0.56	-0.7
2,305,962	-		GFF2279	0.56	-1.3
2,305,983	-		GFF2279	0.57	-1.4
2,305,983	-		GFF2279	0.57	+0.3
2,305,995	-		GFF2279	0.58	-1.1
2,305,995	-		GFF2279	0.58	+0.9
2,306,006	+		GFF2279	0.58	-0.0
2,306,006	+		GFF2279	0.58	-0.3
2,306,030	-		GFF2279	0.60	-1.5
2,306,052	-		GFF2279	0.61	+0.3
2,306,057	+		GFF2279	0.61	-0.3
2,306,067	+		GFF2279	0.62	+0.3
2,306,075	-		GFF2279	0.62	+0.1
2,306,084	+		GFF2279	0.63	-0.3
2,306,092	-		GFF2279	0.63	-0.4
2,306,122	-		GFF2279	0.65	-0.8
2,306,142	-		GFF2279	0.66	-0.8
2,306,183	+		GFF2279	0.69	-0.2
2,306,189	-		GFF2279	0.69	+0.0
2,306,189	-		GFF2279	0.69	+0.4
2,306,189	-		GFF2279	0.69	+0.3
2,306,203	-		GFF2279	0.70	-1.7
2,306,209	-		GFF2279	0.70	+0.0
2,306,210	+		GFF2279	0.70	+0.3
2,306,220	+		GFF2279	0.71	+1.0
2,306,228	+		GFF2279	0.71	-0.2
2,306,267	+		GFF2279	0.73	-2.6
2,306,296	-		GFF2279	0.75	+1.5
2,306,299	-		GFF2279	0.75	+1.3
2,306,304	+		GFF2279	0.76	+0.0
2,306,304	-		GFF2279	0.76	-1.6
2,306,304	-		GFF2279	0.76	+0.5
2,306,322	+		GFF2279	0.77	-0.4
2,306,323	-		GFF2279	0.77	-2.6
2,306,352	-		GFF2279	0.78	-0.2
2,306,365	+		GFF2279	0.79	-0.2
2,306,393	+		GFF2279	0.81	+0.6
2,306,395	+		GFF2279	0.81	+0.1
2,306,395	+		GFF2279	0.81	+1.3
2,306,396	+		GFF2279	0.81	-0.4
2,306,396	+		GFF2279	0.81	-1.1
2,306,396	+		GFF2279	0.81	+0.5
2,306,396	+		GFF2279	0.81	-0.2
2,306,396	+		GFF2279	0.81	-1.3
2,306,396	+		GFF2279	0.81	-0.6
2,306,396	+		GFF2279	0.81	-1.7
2,306,396	+		GFF2279	0.81	+0.5
2,306,396	+		GFF2279	0.81	-0.7
2,306,398	+		GFF2279	0.81	+0.5
2,306,404	-		GFF2279	0.81	-1.3
2,306,404	-		GFF2279	0.81	-2.1
2,306,404	-		GFF2279	0.81	-0.3
2,306,404	-		GFF2279	0.81	-0.4
2,306,404	-		GFF2279	0.81	+1.6
2,306,404	-		GFF2279	0.81	-1.4
2,306,404	-		GFF2279	0.81	-1.6
2,306,404	-		GFF2279	0.81	+1.2
2,306,404	-		GFF2279	0.81	+0.5
2,306,404	-		GFF2279	0.81	+1.1
2,306,404	-		GFF2279	0.81	+0.5
2,306,404	-		GFF2279	0.81	+1.6
2,306,426	+		GFF2279	0.83	+0.1
2,306,439	-		GFF2279	0.83	-0.5
2,306,439	-		GFF2279	0.83	-0.2
2,306,439	-		GFF2279	0.83	-0.3
2,306,439	-		GFF2279	0.83	-1.6
2,306,444	+		GFF2279	0.84	+0.2
2,306,452	-		GFF2279	0.84	-1.0
2,306,452	-		GFF2279	0.84	-0.0
2,306,452	-		GFF2279	0.84	-1.3
2,306,452	-		GFF2279	0.84	-0.7
2,306,467	-		GFF2279	0.85	-1.9
2,306,471	+		GFF2279	0.85	-0.6
2,306,471	+		GFF2279	0.85	-0.9
2,306,471	+		GFF2279	0.85	-0.0
2,306,471	+		GFF2279	0.85	-0.7
2,306,471	-		GFF2279	0.85	-1.7
2,306,477	+		GFF2279	0.86	+0.2
2,306,479	-		GFF2279	0.86	-0.1
2,306,481	+		GFF2279	0.86	-0.6
2,306,481	+		GFF2279	0.86	-0.9
2,306,481	+		GFF2279	0.86	-0.6
2,306,481	+		GFF2279	0.86	+0.4
2,306,481	+		GFF2279	0.86	-0.8
2,306,481	+		GFF2279	0.86	-1.6
2,306,481	+		GFF2279	0.86	-0.2
2,306,481	+		GFF2279	0.86	+1.3
2,306,481	+		GFF2279	0.86	+0.3
2,306,481	+		GFF2279	0.86	-1.3
2,306,489	-		GFF2279	0.86	-1.2
2,306,489	-		GFF2279	0.86	-0.9
2,306,489	-		GFF2279	0.86	+0.4
2,306,489	-		GFF2279	0.86	+0.6
2,306,489	-		GFF2279	0.86	+1.2
2,306,489	-		GFF2279	0.86	+0.9
2,306,489	-		GFF2279	0.86	+0.4
2,306,509	-		GFF2279	0.87	-0.7
2,306,511	+		GFF2279	0.88	-0.2
2,306,513	+		GFF2279	0.88	-0.3
2,306,513	+		GFF2279	0.88	+2.1
2,306,514	-		GFF2279	0.88	+1.5
2,306,526	-		GFF2279	0.88	-0.3
2,306,594	+				+0.3
2,306,597	+				-1.6
2,306,626	+				-1.3
2,306,628	+				+0.6
2,306,628	+				+0.5
2,306,636	-				+0.1
2,306,636	-				+1.2
2,306,636	-				+0.3
2,306,636	-				-0.4
2,306,636	-				-0.1
2,306,636	-				-0.7
2,306,636	-				+0.0
2,306,636	-				-0.7
2,306,662	+				+1.2
2,306,664	+				+0.1
2,306,668	+				+1.6
2,306,676	+				-0.4
2,306,676	+				-2.4
2,306,682	-				+0.7
2,306,683	-				+0.6
2,306,684	-				-1.6
2,306,684	-				-0.5
2,306,686	-				-0.4
2,306,707	-				+0.6
2,306,724	-				+0.0
2,306,732	+				+0.9
2,306,740	-				+0.4
2,306,759	-				+0.6
2,306,842	+				+0.3
2,306,850	-				-0.2
2,306,850	-				+0.4
2,306,862	+				-2.3
2,306,863	+				-0.0
2,306,881	+				+0.1
2,306,884	-				-0.2
2,306,901	+				-2.4
2,306,902	+				-2.1
2,306,945	-		GFF2280	0.10	-0.8
2,307,002	+		GFF2280	0.18	-0.0
2,307,003	-		GFF2280	0.19	+0.5
2,307,005	-		GFF2280	0.19	-1.1
2,307,072	+		GFF2280	0.28	+1.1
2,307,072	+		GFF2280	0.28	-1.3
2,307,072	+		GFF2280	0.28	+0.5
2,307,075	-		GFF2280	0.29	-0.6
2,307,632	+				+0.5
2,307,677	-				-1.0
2,307,684	+				-0.9
2,307,684	+				+0.2
2,307,684	+				+0.9
2,307,684	+				-0.9
2,307,684	+				+0.6
2,307,684	+				-1.3
2,307,684	+				+1.0
2,307,684	+				-0.3
2,307,692	-				-0.2
2,307,692	-				+0.6
2,307,692	-				+0.3
2,307,692	-				+0.3
2,307,692	-				-0.6
2,307,700	-				+0.2
2,307,707	+				-1.9