Strain Fitness in Sphingobium sp. HT1-2 around GFF2228

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,250,204	-		GFF2227	0.32	+0.4
2,250,223	+		GFF2227	0.34	-0.1
2,250,223	+		GFF2227	0.34	+0.2
2,250,231	-		GFF2227	0.34	+0.2
2,250,242	-		GFF2227	0.35	-1.5
2,250,257	-		GFF2227	0.36	+1.3
2,250,288	+		GFF2227	0.38	+0.1
2,250,301	+		GFF2227	0.39	-0.7
2,250,301	+		GFF2227	0.39	+0.1
2,250,301	+		GFF2227	0.39	+0.1
2,250,301	+		GFF2227	0.39	+1.0
2,250,317	+		GFF2227	0.40	-0.8
2,250,323	+		GFF2227	0.41	+0.7
2,250,325	-		GFF2227	0.41	+0.3
2,250,353	+		GFF2227	0.43	-0.4
2,250,353	+		GFF2227	0.43	+0.1
2,250,359	-		GFF2227	0.43	-0.3
2,250,359	-		GFF2227	0.43	+1.0
2,250,359	-		GFF2227	0.43	+0.1
2,250,361	-		GFF2227	0.43	+0.7
2,250,400	-		GFF2227	0.46	-2.3
2,250,422	+		GFF2227	0.47	-0.6
2,250,427	+		GFF2227	0.48	-1.0
2,250,427	+		GFF2227	0.48	-1.4
2,250,427	+		GFF2227	0.48	+0.8
2,250,427	+		GFF2227	0.48	-0.7
2,250,427	+		GFF2227	0.48	+0.4
2,250,427	+		GFF2227	0.48	-0.9
2,250,427	+		GFF2227	0.48	+0.7
2,250,427	+		GFF2227	0.48	+0.7
2,250,427	+		GFF2227	0.48	-0.1
2,250,428	-		GFF2227	0.48	-0.7
2,250,428	-		GFF2227	0.48	-0.0
2,250,435	-		GFF2227	0.48	-0.3
2,250,435	-		GFF2227	0.48	-0.3
2,250,435	-		GFF2227	0.48	+0.5
2,250,435	-		GFF2227	0.48	+0.0
2,250,435	-		GFF2227	0.48	+0.2
2,250,446	-		GFF2227	0.49	-1.1
2,250,454	-		GFF2227	0.50	-0.0
2,250,489	+		GFF2227	0.52	+1.1
2,250,494	+		GFF2227	0.52	+0.3
2,250,496	+		GFF2227	0.52	-2.1
2,250,500	+		GFF2227	0.53	+0.6
2,250,520	-		GFF2227	0.54	-0.5
2,250,531	+		GFF2227	0.55	+0.2
2,250,534	+		GFF2227	0.55	-1.3
2,250,539	-		GFF2227	0.55	-1.8
2,250,560	+		GFF2227	0.57	+0.4
2,250,560	+		GFF2227	0.57	-0.6
2,250,560	+		GFF2227	0.57	-1.0
2,250,565	+		GFF2227	0.57	-2.3
2,250,565	+		GFF2227	0.57	+0.2
2,250,566	+		GFF2227	0.57	-0.6
2,250,568	-		GFF2227	0.57	-0.6
2,250,575	-		GFF2227	0.58	-0.4
2,250,595	+		GFF2227	0.59	+0.9
2,250,595	+		GFF2227	0.59	-0.5
2,250,595	+		GFF2227	0.59	-0.4
2,250,600	+		GFF2227	0.60	+0.9
2,250,603	-		GFF2227	0.60	-0.4
2,250,603	-		GFF2227	0.60	+0.9
2,250,603	-		GFF2227	0.60	+0.4
2,250,603	-		GFF2227	0.60	+1.0
2,250,603	-		GFF2227	0.60	+0.1
2,250,613	-		GFF2227	0.60	+0.5
2,250,618	-		GFF2227	0.61	+1.0
2,250,618	-		GFF2227	0.61	-0.6
2,250,659	+		GFF2227	0.64	-0.8
2,250,685	-		GFF2227	0.65	+0.5
2,250,691	-		GFF2227	0.66	-1.6
2,250,699	+		GFF2227	0.66	-0.6
2,250,708	+		GFF2227	0.67	-0.2
2,250,709	+		GFF2227	0.67	+0.6
2,250,734	+		GFF2227	0.69	+0.1
2,250,742	-		GFF2227	0.69	-0.2
2,250,757	+		GFF2227	0.70	+0.3
2,250,757	+		GFF2227	0.70	+0.8
2,250,757	+		GFF2227	0.70	-1.1
2,250,757	+		GFF2227	0.70	-0.3
2,250,765	-		GFF2227	0.71	-0.7
2,250,765	-		GFF2227	0.71	-0.1
2,250,770	-		GFF2227	0.71	-1.0
2,250,796	-		GFF2227	0.73	+0.7
2,250,803	+		GFF2227	0.73	+0.6
2,250,806	-		GFF2227	0.74	-1.1
2,250,809	+		GFF2227	0.74	-0.6
2,250,809	+		GFF2227	0.74	-2.0
2,250,809	+		GFF2227	0.74	+0.7
2,250,815	+		GFF2227	0.74	+0.4
2,250,816	+		GFF2227	0.74	-0.6
2,250,817	-		GFF2227	0.74	-0.3
2,250,817	-		GFF2227	0.74	-0.0
2,250,817	-		GFF2227	0.74	-0.1
2,250,821	+		GFF2227	0.75	-0.3
2,250,821	+		GFF2227	0.75	+0.2
2,250,823	-		GFF2227	0.75	-1.8
2,250,823	-		GFF2227	0.75	-2.3
2,250,829	-		GFF2227	0.75	-2.4
2,250,852	+		GFF2227	0.77	-0.1
2,250,879	+		GFF2227	0.79	-0.3
2,250,879	+		GFF2227	0.79	-1.1
2,250,879	+		GFF2227	0.79	-0.3
2,250,879	+		GFF2227	0.79	-1.1
2,250,887	-		GFF2227	0.79	+0.1
2,250,909	-		GFF2227	0.81	-0.4
2,250,928	-		GFF2227	0.82	+1.1
2,250,944	-		GFF2227	0.83	+0.2
2,250,945	+		GFF2227	0.83	-1.3
2,250,946	+		GFF2227	0.83	+0.1
2,250,946	+		GFF2227	0.83	-1.4
2,250,946	+		GFF2227	0.83	-1.0
2,250,946	+		GFF2227	0.83	-0.9
2,250,946	+		GFF2227	0.83	+0.3
2,250,946	+		GFF2227	0.83	+0.4
2,250,946	+		GFF2227	0.83	+0.6
2,250,946	+		GFF2227	0.83	-0.4
2,250,946	+		GFF2227	0.83	-2.1
2,250,946	-		GFF2227	0.83	-0.3
2,250,949	-		GFF2227	0.83	+0.4
2,250,953	-		GFF2227	0.84	-1.5
2,250,954	-		GFF2227	0.84	+0.4
2,250,954	-		GFF2227	0.84	+1.5
2,250,954	-		GFF2227	0.84	+0.5
2,250,954	-		GFF2227	0.84	-0.8
2,250,954	-		GFF2227	0.84	+0.4
2,250,954	-		GFF2227	0.84	-1.3
2,250,955	-		GFF2227	0.84	-0.1
2,250,957	+		GFF2227	0.84	-0.2
2,250,957	+		GFF2227	0.84	-1.1
2,250,965	-		GFF2227	0.85	-1.3
2,250,983	+		GFF2227	0.86	-0.3
2,250,983	+		GFF2227	0.86	+0.9
2,250,983	+		GFF2227	0.86	-0.6
2,250,991	-		GFF2227	0.86	+0.2
2,250,991	-		GFF2227	0.86	+1.0
2,250,991	-		GFF2227	0.86	+0.0
2,251,001	-		GFF2227	0.87	-0.6
2,251,008	+		GFF2227	0.87	+0.7
2,251,015	+		GFF2227	0.88	-1.4
2,251,015	+		GFF2227	0.88	+0.5
2,251,015	+		GFF2227	0.88	-1.2
2,251,023	-		GFF2227	0.89	-0.5
2,251,023	-		GFF2227	0.89	+0.5
2,251,035	+		GFF2227	0.89	+0.0
2,251,044	-		GFF2227	0.90	+0.8
2,251,054	-				+0.6
2,251,067	-				-0.2
2,251,074	+				-0.4
2,251,074	+				+0.3
2,251,074	+				+0.6
2,251,074	+				-0.9
2,251,074	+				-0.6
2,251,074	+				-0.3
2,251,081	-				-0.5
2,251,082	-				-0.5
2,251,082	-				-0.8
2,251,102	+				+0.7
2,251,103	+				-0.7
2,251,106	-				-0.1
2,251,176	+				-2.2
2,251,216	+				-0.7
2,251,221	+				+0.2
2,251,223	-				+0.4
2,251,226	+				-1.4
2,251,229	-				+0.1
2,251,231	+				-1.7
2,251,231	-				-1.5
2,251,245	+				+0.3
2,251,246	+				+0.8
2,251,246	+				-0.1
2,251,249	-				-1.6
2,251,254	-				+0.2
2,251,269	+				+0.0
2,251,280	-				+0.1
2,251,307	-				-0.9
2,251,309	+				+0.9
2,251,316	+				+0.9
2,251,316	+				+0.4
2,251,364	+		GFF2228	0.13	+0.7
2,251,369	+		GFF2228	0.14	+0.5
2,251,398	+		GFF2228	0.16	-0.7
2,251,406	-		GFF2228	0.17	-1.8
2,251,421	-		GFF2228	0.18	-0.9
2,251,432	+		GFF2228	0.19	+0.8
2,251,432	+		GFF2228	0.19	-1.2
2,251,432	+		GFF2228	0.19	+1.0
2,251,432	+		GFF2228	0.19	+0.2
2,251,433	+		GFF2228	0.19	-1.1
2,251,440	-		GFF2228	0.19	+0.9
2,251,440	-		GFF2228	0.19	+0.3
2,251,440	-		GFF2228	0.19	-0.9
2,251,440	-		GFF2228	0.19	+0.2
2,251,440	-		GFF2228	0.19	+0.2
2,251,440	-		GFF2228	0.19	+1.8
2,251,440	-		GFF2228	0.19	-1.4
2,251,440	-		GFF2228	0.19	+0.9
2,251,440	-		GFF2228	0.19	-1.5
2,251,440	-		GFF2228	0.19	-0.5
2,251,453	+		GFF2228	0.20	-0.5
2,251,456	-		GFF2228	0.20	-0.5
2,251,461	-		GFF2228	0.21	+0.5
2,251,534	-		GFF2228	0.27	-1.4
2,251,538	+		GFF2228	0.27	+0.4
2,251,550	+		GFF2228	0.28	-0.6
2,251,550	+		GFF2228	0.28	-0.7
2,251,550	+		GFF2228	0.28	+0.3
2,251,550	+		GFF2228	0.28	-0.1
2,251,550	+		GFF2228	0.28	-0.2
2,251,553	-		GFF2228	0.28	-0.0
2,251,558	-		GFF2228	0.28	+0.2
2,251,558	-		GFF2228	0.28	-1.5
2,251,558	-		GFF2228	0.28	-0.2
2,251,558	-		GFF2228	0.28	-1.6
2,251,558	-		GFF2228	0.28	+1.0
2,251,558	-		GFF2228	0.28	-1.4
2,251,558	-		GFF2228	0.28	-1.4
2,251,573	-		GFF2228	0.30	-0.2
2,251,599	-		GFF2228	0.32	-1.5
2,251,661	-		GFF2228	0.37	-0.7
2,251,681	+		GFF2228	0.38	+0.1
2,251,690	+		GFF2228	0.39	-0.7
2,251,699	+		GFF2228	0.40	+0.3
2,251,705	-		GFF2228	0.40	+0.3
2,251,750	-		GFF2228	0.44	-2.3
2,251,770	+		GFF2228	0.45	+1.1
2,251,772	+		GFF2228	0.45	-1.5
2,251,772	+		GFF2228	0.45	+0.6
2,251,780	+		GFF2228	0.46	+1.7
2,251,786	+		GFF2228	0.46	-0.1
2,251,786	+		GFF2228	0.46	+1.1
2,251,786	+		GFF2228	0.46	+0.1
2,251,786	+		GFF2228	0.46	-0.0
2,251,786	+		GFF2228	0.46	+0.3
2,251,786	+		GFF2228	0.46	-2.8
2,251,786	+		GFF2228	0.46	-0.7
2,251,789	-		GFF2228	0.47	-0.4
2,251,794	-		GFF2228	0.47	-0.8
2,251,794	-		GFF2228	0.47	+0.1
2,251,794	-		GFF2228	0.47	-0.9
2,251,794	-		GFF2228	0.47	+1.1
2,251,794	-		GFF2228	0.47	+0.2
2,251,794	-		GFF2228	0.47	-0.1
2,251,794	-		GFF2228	0.47	+1.6
2,251,798	+		GFF2228	0.47	+0.3
2,251,804	-		GFF2228	0.48	-0.6
2,251,804	-		GFF2228	0.48	-0.6
2,251,814	-		GFF2228	0.49	-0.9
2,251,847	+		GFF2228	0.51	+0.2
2,251,850	-		GFF2228	0.51	+0.1
2,251,853	+		GFF2228	0.52	-0.1
2,251,858	+		GFF2228	0.52	-0.2
2,251,861	-		GFF2228	0.52	-1.2
2,251,861	-		GFF2228	0.52	-1.4
2,251,871	-		GFF2228	0.53	+0.2
2,251,876	+		GFF2228	0.53	-0.6
2,251,881	-		GFF2228	0.54	+0.5
2,251,911	-		GFF2228	0.56	-2.0
2,251,911	-		GFF2228	0.56	-0.2
2,251,927	+		GFF2228	0.57	+0.8
2,251,933	-		GFF2228	0.58	-0.2
2,251,933	-		GFF2228	0.58	-1.3
2,251,954	+		GFF2228	0.60	+0.3
2,251,954	+		GFF2228	0.60	-0.8
2,251,960	+		GFF2228	0.60	+1.0
2,251,961	+		GFF2228	0.60	-0.6
2,251,961	-		GFF2228	0.60	-1.8
2,251,971	+		GFF2228	0.61	-0.3
2,251,975	-		GFF2228	0.61	-1.8
2,251,975	-		GFF2228	0.61	+0.2
2,251,975	-		GFF2228	0.61	-0.2
2,251,975	-		GFF2228	0.61	-1.8
2,251,975	-		GFF2228	0.61	-1.6
2,251,990	+		GFF2228	0.62	+0.4
2,251,990	+		GFF2228	0.62	-1.6
2,251,998	-		GFF2228	0.63	+0.4
2,252,002	-		GFF2228	0.63	+0.6
2,252,016	-		GFF2228	0.64	+1.3
2,252,016	-		GFF2228	0.64	-1.4
2,252,033	-		GFF2228	0.66	-1.6
2,252,036	+		GFF2228	0.66	+1.9
2,252,036	+		GFF2228	0.66	-0.2
2,252,044	-		GFF2228	0.67	-0.3
2,252,044	-		GFF2228	0.67	+0.2
2,252,067	-		GFF2228	0.68	+1.5
2,252,114	+		GFF2228	0.72	-1.6
2,252,114	+		GFF2228	0.72	+0.7
2,252,114	+		GFF2228	0.72	+0.4
2,252,114	+		GFF2228	0.72	+0.9
2,252,114	+		GFF2228	0.72	+1.1
2,252,114	+		GFF2228	0.72	-0.2
2,252,154	-		GFF2228	0.75	+0.2
2,252,158	+		GFF2228	0.76	-2.1
2,252,177	-		GFF2228	0.77	-1.4
2,252,185	-		GFF2228	0.78	+0.5
2,252,198	+		GFF2228	0.79	+0.4
2,252,206	-		GFF2228	0.79	-0.1
2,252,206	-		GFF2228	0.79	+1.2
2,252,210	-		GFF2228	0.80	+0.5
2,252,210	-		GFF2228	0.80	-1.2
2,252,210	-		GFF2228	0.80	-0.4
2,252,225	+		GFF2228	0.81	-0.1
2,252,233	-		GFF2228	0.81	-0.2
2,252,270	+		GFF2228	0.84	+0.5
2,252,281	+		GFF2228	0.85	+1.2
2,252,281	+		GFF2228	0.85	-0.5
2,252,289	-		GFF2228	0.86	-0.3
2,252,289	-		GFF2228	0.86	+0.6
2,252,300	-		GFF2228	0.87	-1.3
2,252,313	+		GFF2228	0.88	-0.3
2,252,315	+		GFF2228	0.88	-0.8
2,252,315	+		GFF2228	0.88	+0.3
2,252,315	+		GFF2228	0.88	-0.2
2,252,329	+		GFF2228	0.89	-1.0
2,252,342	-				+0.6
2,252,343	-				-0.3
2,252,343	-				-0.1
2,252,352	+				+0.2
2,252,360	-				-0.3
2,252,365	-				-0.4
2,252,365	-				+0.3
2,252,373	-				-0.1
2,252,382	+				-0.5
2,252,382	+				+1.1
2,252,385	+				-1.0
2,252,385	+				+0.9
2,252,387	+				-0.7
2,252,390	-				+0.3
2,252,392	+				-1.1
2,252,392	+				-0.1
2,252,392	+				-2.3
2,252,392	+				-0.3
2,252,393	-				-0.0
2,252,395	-				-0.4
2,252,395	-				-1.3
2,252,400	-				+0.2
2,252,413	+				-1.1
2,252,418	+				+0.6
2,252,421	-				-0.7
2,252,426	-				-2.6
2,252,451	+				-1.1
2,252,517	+				-1.0
2,252,517	+				-0.1
2,252,517	+				-1.1
2,252,518	+				+0.9
2,252,525	-				+0.6
2,252,525	-				-2.1
2,252,525	-				+0.1
2,252,576	+				-0.7
2,252,588	+				-0.4
2,252,588	+				-0.5
2,252,588	+				-1.3
2,252,588	+				+0.4
2,252,588	+				-1.1
2,252,588	+				-0.5
2,252,588	+				-1.5
2,252,588	+				+0.2
2,252,588	+				+0.7
2,252,588	+				+0.1
2,252,596	-				-0.4
2,252,596	-				-1.2
2,252,596	-				-0.1
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