Strain Fitness in Sphingobium sp. HT1-2 around GFF2124

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,159,542	-				+0.4
2,159,564	+				-0.8
2,159,564	+				-2.1
2,159,564	+				+0.1
2,159,564	+				+0.4
2,159,564	+				+0.6
2,159,564	+				-0.4
2,159,564	+				+1.0
2,159,564	+				+1.3
2,159,565	+				-0.5
2,159,572	-				-0.1
2,159,572	-				+0.2
2,159,572	-				+0.1
2,159,572	-				+0.2
2,159,572	-				-0.4
2,159,572	-				-1.4
2,159,572	-				+1.5
2,159,700	-				-1.6
2,159,707	+				-1.0
2,159,715	-				-3.0
2,159,717	+				+0.4
2,159,736	+				+0.6
2,159,746	-				-1.6
2,159,749	-				+0.1
2,159,811	+		GFF2123	0.21	+1.5
2,159,814	-		GFF2123	0.21	+0.1
2,159,816	+		GFF2123	0.22	-1.6
2,159,824	-		GFF2123	0.23	-0.6
2,159,857	-		GFF2123	0.29	-1.9
2,159,857	-		GFF2123	0.29	-1.8
2,159,857	-		GFF2123	0.29	-0.1
2,159,869	-		GFF2123	0.31	+0.7
2,159,869	-		GFF2123	0.31	-0.6
2,159,872	+		GFF2123	0.32	-0.3
2,159,872	+		GFF2123	0.32	+1.1
2,159,872	+		GFF2123	0.32	+0.4
2,159,872	+		GFF2123	0.32	-1.1
2,159,874	-		GFF2123	0.32	+0.3
2,159,880	-		GFF2123	0.33	-1.0
2,159,880	-		GFF2123	0.33	-0.3
2,159,890	-		GFF2123	0.35	-0.3
2,159,895	+		GFF2123	0.36	+0.2
2,159,925	+		GFF2123	0.41	-0.8
2,159,929	+		GFF2123	0.42	-0.8
2,159,929	+		GFF2123	0.42	-0.5
2,159,929	+		GFF2123	0.42	+0.5
2,159,929	+		GFF2123	0.42	+1.5
2,159,929	+		GFF2123	0.42	+0.4
2,159,929	+		GFF2123	0.42	+0.3
2,159,935	+		GFF2123	0.43	+0.8
2,159,935	-		GFF2123	0.43	+0.1
2,159,935	-		GFF2123	0.43	-0.6
2,159,943	-		GFF2123	0.44	+0.5
2,159,943	-		GFF2123	0.44	+0.6
2,159,943	-		GFF2123	0.44	+0.4
2,159,990	+		GFF2123	0.52	-0.4
2,159,990	+		GFF2123	0.52	-1.0
2,159,990	+		GFF2123	0.52	+0.9
2,159,998	-		GFF2123	0.54	-0.2
2,159,998	-		GFF2123	0.54	+0.3
2,160,000	+		GFF2123	0.54	+2.0
2,160,000	+		GFF2123	0.54	-0.5
2,160,000	+		GFF2123	0.54	-0.5
2,160,000	+		GFF2123	0.54	+1.7
2,160,000	+		GFF2123	0.54	-0.7
2,160,000	+		GFF2123	0.54	+1.0
2,160,000	+		GFF2123	0.54	+0.3
2,160,000	+		GFF2123	0.54	+1.1
2,160,000	+		GFF2123	0.54	+0.4
2,160,000	+		GFF2123	0.54	-1.4
2,160,000	+		GFF2123	0.54	+0.0
2,160,003	-		GFF2123	0.55	-0.3
2,160,003	-		GFF2123	0.55	+0.1
2,160,008	-		GFF2123	0.56	+0.6
2,160,008	-		GFF2123	0.56	+0.6
2,160,008	-		GFF2123	0.56	-1.0
2,160,008	-		GFF2123	0.56	-0.1
2,160,008	-		GFF2123	0.56	-1.4
2,160,008	-		GFF2123	0.56	-0.7
2,160,008	-		GFF2123	0.56	-0.6
2,160,008	-		GFF2123	0.56	-0.3
2,160,008	-		GFF2123	0.56	+0.7
2,160,008	-		GFF2123	0.56	-0.1
2,160,008	-		GFF2123	0.56	-1.0
2,160,013	-		GFF2123	0.56	-0.0
2,160,015	+		GFF2123	0.57	-0.4
2,160,054	+		GFF2123	0.64	-1.4
2,160,054	+		GFF2123	0.64	-1.8
2,160,062	-		GFF2123	0.65	-1.5
2,160,062	-		GFF2123	0.65	-0.4
2,160,064	+		GFF2123	0.65	-0.8
2,160,072	-		GFF2123	0.67	-0.5
2,160,072	-		GFF2123	0.67	-1.5
2,160,073	-		GFF2123	0.67	-0.7
2,160,080	-		GFF2123	0.68	-0.2
2,160,093	+		GFF2123	0.71	-0.9
2,160,099	+		GFF2123	0.72	+0.5
2,160,099	+		GFF2123	0.72	+0.5
2,160,108	+		GFF2123	0.73	-1.6
2,160,108	+		GFF2123	0.73	-0.4
2,160,110	+		GFF2123	0.74	-1.1
2,160,110	+		GFF2123	0.74	+1.0
2,160,111	-		GFF2123	0.74	-0.7
2,160,116	-		GFF2123	0.75	+0.5
2,160,121	-		GFF2123	0.75	+1.1
2,160,147	+		GFF2123	0.80	-1.9
2,160,149	-		GFF2123	0.80	-0.3
2,160,174	+		GFF2123	0.85	-0.7
2,160,190	-		GFF2123	0.88	-0.4
2,160,208	-				-1.9
2,160,213	-				-1.8
2,160,218	-				-0.1
2,160,218	-				-1.0
2,160,218	-				-0.1
2,160,223	-				-0.8
2,160,237	-				-0.9
2,160,247	-				-1.4
2,160,260	+				-0.0
2,160,261	+				-0.5
2,160,265	+				-0.4
2,160,269	-				-0.0
2,160,291	-				-2.8
2,160,295	-				-0.7
2,160,321	-				+0.5
2,160,345	-				+0.7
2,160,352	-				+0.7
2,160,352	-				+0.8
2,160,381	-		GFF2124	0.11	+0.1
2,160,386	-		GFF2124	0.12	+0.2
2,160,398	+		GFF2124	0.13	+0.4
2,160,398	+		GFF2124	0.13	+0.3
2,160,403	+		GFF2124	0.13	+0.0
2,160,406	-		GFF2124	0.13	-0.4
2,160,406	-		GFF2124	0.13	-0.8
2,160,406	-		GFF2124	0.13	-1.0
2,160,406	-		GFF2124	0.13	-0.8
2,160,406	-		GFF2124	0.13	-0.0
2,160,406	-		GFF2124	0.13	+0.3
2,160,412	+		GFF2124	0.14	+0.1
2,160,412	+		GFF2124	0.14	-1.1
2,160,420	-		GFF2124	0.15	+0.2
2,160,430	-		GFF2124	0.16	+0.4
2,160,446	+		GFF2124	0.17	+0.6
2,160,454	-		GFF2124	0.18	+0.2
2,160,454	-		GFF2124	0.18	-0.0
2,160,454	-		GFF2124	0.18	-0.3
2,160,456	+		GFF2124	0.18	-0.4
2,160,460	+		GFF2124	0.18	+0.5
2,160,460	+		GFF2124	0.18	-0.7
2,160,468	-		GFF2124	0.19	-1.7
2,160,482	+		GFF2124	0.20	-0.9
2,160,482	+		GFF2124	0.20	-1.8
2,160,482	+		GFF2124	0.20	+1.5
2,160,482	+		GFF2124	0.20	+0.6
2,160,482	+		GFF2124	0.20	+1.0
2,160,482	+		GFF2124	0.20	+0.0
2,160,482	+		GFF2124	0.20	-0.6
2,160,482	+		GFF2124	0.20	-0.0
2,160,482	+		GFF2124	0.20	-0.8
2,160,482	+		GFF2124	0.20	-0.0
2,160,482	+		GFF2124	0.20	-0.2
2,160,482	+		GFF2124	0.20	-1.1
2,160,482	+		GFF2124	0.20	-1.4
2,160,482	+		GFF2124	0.20	+0.0
2,160,482	+		GFF2124	0.20	+0.7
2,160,482	+		GFF2124	0.20	+0.8
2,160,482	+		GFF2124	0.20	-1.5
2,160,490	-		GFF2124	0.21	+1.1
2,160,490	-		GFF2124	0.21	+1.2
2,160,490	-		GFF2124	0.21	+0.1
2,160,490	-		GFF2124	0.21	-1.0
2,160,490	-		GFF2124	0.21	-0.8
2,160,490	-		GFF2124	0.21	-0.1
2,160,490	-		GFF2124	0.21	-0.4
2,160,490	-		GFF2124	0.21	-1.4
2,160,490	-		GFF2124	0.21	+0.4
2,160,490	-		GFF2124	0.21	-1.3
2,160,490	-		GFF2124	0.21	+0.2
2,160,490	-		GFF2124	0.21	-0.0
2,160,490	-		GFF2124	0.21	-0.6
2,160,490	-		GFF2124	0.21	+0.4
2,160,490	-		GFF2124	0.21	+0.6
2,160,490	-		GFF2124	0.21	+0.5
2,160,490	-		GFF2124	0.21	-0.6
2,160,490	-		GFF2124	0.21	-0.7
2,160,490	-		GFF2124	0.21	-0.0
2,160,492	+		GFF2124	0.21	-0.4
2,160,500	-		GFF2124	0.22	-1.9
2,160,518	-		GFF2124	0.23	+0.8
2,160,519	-		GFF2124	0.24	+1.2
2,160,538	-		GFF2124	0.25	+0.2
2,160,542	+		GFF2124	0.26	+0.4
2,160,555	+		GFF2124	0.27	-0.9
2,160,573	+		GFF2124	0.28	+0.8
2,160,581	-		GFF2124	0.29	+0.7
2,160,581	-		GFF2124	0.29	-0.2
2,160,581	-		GFF2124	0.29	-1.6
2,160,599	+		GFF2124	0.31	-1.6
2,160,599	+		GFF2124	0.31	-2.7
2,160,617	+		GFF2124	0.32	-2.0
2,160,623	+		GFF2124	0.33	-0.4
2,160,623	+		GFF2124	0.33	+0.4
2,160,623	+		GFF2124	0.33	+0.4
2,160,623	+		GFF2124	0.33	-0.8
2,160,623	+		GFF2124	0.33	-1.2
2,160,623	+		GFF2124	0.33	-1.3
2,160,623	+		GFF2124	0.33	-2.3
2,160,631	-		GFF2124	0.34	+0.3
2,160,631	-		GFF2124	0.34	+0.3
2,160,631	-		GFF2124	0.34	-0.8
2,160,631	-		GFF2124	0.34	-0.7
2,160,631	-		GFF2124	0.34	-0.4
2,160,633	+		GFF2124	0.34	+0.6
2,160,643	-		GFF2124	0.35	+0.9
2,160,644	-		GFF2124	0.35	-0.2
2,160,665	+		GFF2124	0.37	+0.9
2,160,679	-		GFF2124	0.38	+0.7
2,160,679	-		GFF2124	0.38	-0.5
2,160,728	+		GFF2124	0.42	+0.1
2,160,728	+		GFF2124	0.42	-0.1
2,160,728	+		GFF2124	0.42	+0.1
2,160,734	+		GFF2124	0.43	-0.3
2,160,753	-		GFF2124	0.44	-0.3
2,160,782	-		GFF2124	0.47	+0.4
2,160,785	+		GFF2124	0.47	-0.4
2,160,793	-		GFF2124	0.48	-0.1
2,160,793	-		GFF2124	0.48	+1.1
2,160,807	+		GFF2124	0.49	+1.3
2,160,808	+		GFF2124	0.49	-0.7
2,160,815	-		GFF2124	0.50	-0.9
2,160,817	+		GFF2124	0.50	-0.4
2,160,817	+		GFF2124	0.50	+0.5
2,160,817	+		GFF2124	0.50	-0.3
2,160,817	+		GFF2124	0.50	-1.9
2,160,825	+		GFF2124	0.51	-0.1
2,160,825	-		GFF2124	0.51	+0.6
2,160,825	-		GFF2124	0.51	-0.2
2,160,833	-		GFF2124	0.52	-0.6
2,160,836	+		GFF2124	0.52	+0.6
2,160,836	+		GFF2124	0.52	-0.1
2,160,836	+		GFF2124	0.52	-0.5
2,160,844	-		GFF2124	0.53	-1.6
2,160,844	-		GFF2124	0.53	-3.3
2,160,844	-		GFF2124	0.53	+0.7
2,160,844	-		GFF2124	0.53	+1.0
2,160,867	+		GFF2124	0.55	-1.6
2,160,875	-		GFF2124	0.55	-2.3
2,160,875	-		GFF2124	0.55	-0.4
2,160,875	-		GFF2124	0.55	-0.5
2,160,890	+		GFF2124	0.57	-0.3
2,160,891	+		GFF2124	0.57	-0.1
2,160,904	+		GFF2124	0.58	-0.7
2,160,989	+		GFF2124	0.66	-0.5
2,160,989	+		GFF2124	0.66	-0.3
2,160,989	+		GFF2124	0.66	+0.4
2,160,989	+		GFF2124	0.66	-0.4
2,160,989	+		GFF2124	0.66	+0.7
2,160,991	+		GFF2124	0.66	-1.0
2,160,997	-		GFF2124	0.66	+0.2
2,161,004	+		GFF2124	0.67	+0.5
2,161,020	-		GFF2124	0.68	-0.5
2,161,020	-		GFF2124	0.68	+1.1
2,161,020	-		GFF2124	0.68	-0.0
2,161,025	-		GFF2124	0.69	+0.7
2,161,040	+		GFF2124	0.70	-0.3
2,161,050	+		GFF2124	0.71	-1.8
2,161,053	+		GFF2124	0.71	-0.0
2,161,053	+		GFF2124	0.71	+1.5
2,161,053	+		GFF2124	0.71	+0.5
2,161,061	-		GFF2124	0.72	+0.2
2,161,061	-		GFF2124	0.72	+0.7
2,161,061	-		GFF2124	0.72	+0.6
2,161,074	+		GFF2124	0.73	-1.4
2,161,088	-		GFF2124	0.74	+1.4
2,161,092	-		GFF2124	0.75	+0.1
2,161,133	+		GFF2124	0.78	+0.2
2,161,157	+		GFF2124	0.81	-0.7
2,161,200	+		GFF2124	0.84	+0.5
2,161,213	-		GFF2124	0.86	-2.4
2,161,213	-		GFF2124	0.86	-0.6
2,161,219	+		GFF2124	0.86	-1.1
2,161,236	+		GFF2124	0.88	+0.2
2,161,236	+		GFF2124	0.88	-0.7
2,161,236	+		GFF2124	0.88	-0.7
2,161,236	+		GFF2124	0.88	-1.6
2,161,240	-		GFF2124	0.88	-1.3
2,161,244	-		GFF2124	0.88	-0.1
2,161,244	-		GFF2124	0.88	+0.7
2,161,251	+		GFF2124	0.89	-0.6
2,161,259	-		GFF2124	0.90	-2.0
2,161,259	-		GFF2124	0.90	-0.6
2,161,297	+				-1.0
2,161,302	+				+0.8
2,161,302	+				-0.1
2,161,302	+				-0.0
2,161,305	-				+0.4
2,161,305	-				-1.0
2,161,306	+				+0.9
2,161,306	+				+1.2
2,161,310	-				+0.9
2,161,321	+				-0.4
2,161,324	-				-0.5
2,161,326	+				-1.1
2,161,329	-				-0.3
2,161,329	-				-1.4
2,161,329	-				-2.3
2,161,371	-				-0.5
2,161,377	-				+0.1
2,161,402	+				-0.4
2,161,416	+				+0.1
2,161,416	+				+0.5
2,161,430	+				-0.4
2,161,430	+				+0.3
2,161,436	+				-0.2
2,161,442	+				+0.6
2,161,442	+				-0.9
2,161,442	+				-0.5
2,161,442	+				-1.4
2,161,442	+				-0.8
2,161,442	+				+0.6
2,161,442	+				-2.0
2,161,448	+				+0.8
2,161,450	-				+0.3
2,161,450	-				+0.4
2,161,450	-				+0.4
2,161,461	+		GFF2125	0.10	-0.2
2,161,463	+		GFF2125	0.11	-0.2
2,161,469	-		GFF2125	0.12	+0.5
2,161,469	-		GFF2125	0.12	-2.3
2,161,469	-		GFF2125	0.12	+1.9
2,161,469	-		GFF2125	0.12	-1.6
2,161,469	-		GFF2125	0.12	-0.1
2,161,469	-		GFF2125	0.12	-0.8
2,161,505	+		GFF2125	0.22	+0.2
2,161,513	-		GFF2125	0.24	-1.4
2,161,523	+		GFF2125	0.27	-1.0
2,161,523	+		GFF2125	0.27	-0.5
2,161,549	+		GFF2125	0.34	-1.8
2,161,549	+		GFF2125	0.34	+0.9
2,161,549	+		GFF2125	0.34	-1.5
2,161,549	+		GFF2125	0.34	-0.4
2,161,549	+		GFF2125	0.34	-3.1
2,161,549	+		GFF2125	0.34	+1.7
2,161,549	+		GFF2125	0.34	-1.7
2,161,557	-		GFF2125	0.36	-2.1
2,161,557	-		GFF2125	0.36	-0.3
2,161,557	-		GFF2125	0.36	-1.9
2,161,557	-		GFF2125	0.36	+0.4
2,161,557	-		GFF2125	0.36	+0.1
2,161,557	-		GFF2125	0.36	+0.2
2,161,557	-		GFF2125	0.36	-0.1
2,161,557	-		GFF2125	0.36	-0.3
2,161,557	-		GFF2125	0.36	+0.3
2,161,567	-		GFF2125	0.39	-0.2
2,161,567	-		GFF2125	0.39	-1.9
2,161,587	+		GFF2125	0.44	+0.6
2,161,588	-		GFF2125	0.45	+0.2
2,161,617	+		GFF2125	0.53	-0.4
2,161,617	+		GFF2125	0.53	-0.1
2,161,627	+		GFF2125	0.55	+0.0
2,161,637	+		GFF2125	0.58	-1.1
2,161,644	+		GFF2125	0.60	-0.4
2,161,644	-		GFF2125	0.60	-1.4
2,161,645	-		GFF2125	0.60	-0.5
2,161,645	-		GFF2125	0.60	+0.4
2,161,658	+		GFF2125	0.64	+0.7
2,161,658	+		GFF2125	0.64	-1.0
2,161,658	+		GFF2125	0.64	+0.9
2,161,666	-		GFF2125	0.66	+0.3
2,161,669	+		GFF2125	0.67	+1.1
2,161,671	-		GFF2125	0.67	-2.4
2,161,677	+		GFF2125	0.69	-1.0
2,161,693	+		GFF2125	0.73	+0.3
2,161,722	+		GFF2125	0.81	+1.8
2,161,762	-				-0.2
2,161,792	+				+0.9
2,161,800	+				-0.7
2,161,820	+				-1.2
2,161,852	+				-0.7
2,161,852	+				+0.3
2,161,875	+				-0.1