Strain Fitness in Sphingobium sp. HT1-2 around GFF2033

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,061,523	-		GFF2031	0.87	-0.5
2,061,523	-		GFF2031	0.87	-0.2
2,061,530	-		GFF2031	0.87	-0.5
2,061,545	-		GFF2031	0.89	-1.0
2,061,545	-		GFF2031	0.89	-0.7
2,061,548	+		GFF2031	0.89	+0.4
2,061,562	-				-0.4
2,061,569	+				-0.5
2,061,578	-				-1.6
2,061,603	+				-0.3
2,061,603	+				-0.5
2,061,611	-				-2.0
2,061,611	-				+0.9
2,061,618	+				-0.2
2,061,633	+				+1.1
2,061,633	+				-0.1
2,061,641	-				+1.9
2,061,641	-				+0.5
2,061,646	-				-0.6
2,061,650	+				-0.3
2,061,650	+				-0.1
2,061,650	+				-1.5
2,061,650	+				+0.5
2,061,650	+				+0.2
2,061,658	-				-0.7
2,061,658	-				+1.1
2,061,658	-				-0.6
2,061,658	-				-0.0
2,061,702	+				+0.1
2,061,702	+				+0.7
2,061,710	+				+0.6
2,061,718	-				-1.1
2,061,752	+				-1.4
2,061,752	-				+0.3
2,061,760	-				-0.2
2,061,777	+				-0.5
2,061,777	+				-1.6
2,061,778	+				+0.8
2,061,778	+				-1.0
2,061,786	-				+0.0
2,061,786	-				+0.9
2,061,838	+				-0.9
2,061,838	+				-1.8
2,061,841	-				-2.7
2,061,841	-				-1.7
2,061,841	-				-0.8
2,061,841	-				-1.0
2,061,846	-				-1.4
2,061,846	-				+1.4
2,061,848	-				+0.0
2,061,875	+		GFF2032	0.14	+1.0
2,061,883	+		GFF2032	0.15	+1.1
2,061,891	-		GFF2032	0.16	-0.8
2,061,892	-		GFF2032	0.17	+0.3
2,061,892	-		GFF2032	0.17	-1.3
2,061,905	+		GFF2032	0.19	-1.3
2,061,908	-		GFF2032	0.19	+1.1
2,061,910	+		GFF2032	0.19	-1.3
2,061,968	-		GFF2032	0.29	+0.9
2,061,968	-		GFF2032	0.29	-2.0
2,061,968	-		GFF2032	0.29	-2.7
2,061,976	-		GFF2032	0.30	-0.0
2,062,014	-		GFF2032	0.36	+1.5
2,062,014	-		GFF2032	0.36	+1.8
2,062,014	-		GFF2032	0.36	-0.2
2,062,014	-		GFF2032	0.36	+0.7
2,062,076	-		GFF2032	0.46	+0.3
2,062,076	-		GFF2032	0.46	+0.7
2,062,085	-		GFF2032	0.47	-0.5
2,062,085	-		GFF2032	0.47	-2.3
2,062,093	+		GFF2032	0.48	+0.2
2,062,101	-		GFF2032	0.50	+0.1
2,062,101	-		GFF2032	0.50	+0.1
2,062,124	+		GFF2032	0.53	+0.4
2,062,127	-		GFF2032	0.54	+0.5
2,062,132	-		GFF2032	0.55	-0.4
2,062,144	+		GFF2032	0.56	-0.4
2,062,144	+		GFF2032	0.56	-0.5
2,062,144	+		GFF2032	0.56	+0.3
2,062,144	-		GFF2032	0.56	+1.1
2,062,152	-		GFF2032	0.58	-0.4
2,062,152	-		GFF2032	0.58	-0.5
2,062,158	-		GFF2032	0.59	-0.1
2,062,174	-		GFF2032	0.61	-1.8
2,062,174	-		GFF2032	0.61	+0.0
2,062,229	-		GFF2032	0.70	-0.9
2,062,254	-		GFF2032	0.74	+1.2
2,062,260	+		GFF2032	0.75	-0.4
2,062,274	+		GFF2032	0.77	+0.1
2,062,328	+		GFF2032	0.85	-1.6
2,062,328	+		GFF2032	0.85	-0.1
2,062,328	+		GFF2032	0.85	+0.2
2,062,331	-		GFF2032	0.86	+1.4
2,062,336	-		GFF2032	0.87	-0.1
2,062,336	-		GFF2032	0.87	-1.7
2,062,336	-		GFF2032	0.87	+0.1
2,062,336	-		GFF2032	0.87	+0.1
2,062,336	-		GFF2032	0.87	+0.3
2,062,377	-				-0.6
2,062,422	+				-1.2
2,062,428	-				-0.4
2,062,433	+				-1.6
2,062,433	-				-1.0
2,062,435	+				-0.6
2,062,438	-				-0.7
2,062,441	-				-1.7
2,062,441	-				-0.3
2,062,441	-				+0.9
2,062,443	-				+0.1
2,062,444	+				+0.6
2,062,455	+				+1.1
2,062,472	-				+0.9
2,062,498	+				-1.9
2,062,529	+				+0.5
2,062,537	+				-1.0
2,062,542	+				-1.8
2,062,563	+				-0.4
2,062,580	+				+1.4
2,062,644	+				+0.3
2,062,644	+				-0.8
2,062,644	+				-0.4
2,062,644	+				+0.2
2,062,644	+				-1.4
2,062,644	+				-2.0
2,062,644	+				-1.5
2,062,644	+				+0.3
2,062,645	+				+0.7
2,062,647	-				-0.2
2,062,647	-				-1.0
2,062,652	-				+1.0
2,062,652	-				-0.2
2,062,652	-				+0.2
2,062,652	-				-0.3
2,062,691	+				-0.2
2,062,711	+		GFF2033	0.10	+0.5
2,062,712	+		GFF2033	0.10	-0.8
2,062,727	+		GFF2033	0.11	-0.0
2,062,731	+		GFF2033	0.11	+0.1
2,062,731	+		GFF2033	0.11	+1.6
2,062,731	+		GFF2033	0.11	-0.2
2,062,739	-		GFF2033	0.12	-0.0
2,062,753	-		GFF2033	0.12	-0.3
2,062,772	-		GFF2033	0.13	-0.4
2,062,779	+		GFF2033	0.14	-0.7
2,062,779	+		GFF2033	0.14	-0.2
2,062,779	+		GFF2033	0.14	-0.9
2,062,782	+		GFF2033	0.14	-0.9
2,062,787	-		GFF2033	0.14	-1.9
2,062,787	-		GFF2033	0.14	-3.4
2,062,792	-		GFF2033	0.14	-0.3
2,062,792	-		GFF2033	0.14	+0.3
2,062,807	-		GFF2033	0.15	+0.3
2,062,809	+		GFF2033	0.15	-1.1
2,062,816	+		GFF2033	0.16	+0.4
2,062,817	-		GFF2033	0.16	-1.3
2,062,817	-		GFF2033	0.16	+0.3
2,062,824	-		GFF2033	0.16	-0.7
2,062,824	-		GFF2033	0.16	-1.2
2,062,845	+		GFF2033	0.17	-0.8
2,062,853	-		GFF2033	0.18	-0.0
2,062,853	-		GFF2033	0.18	+1.7
2,062,868	+		GFF2033	0.18	-2.4
2,062,868	+		GFF2033	0.18	-1.4
2,062,868	+		GFF2033	0.18	+0.1
2,062,876	-		GFF2033	0.19	-0.5
2,062,876	-		GFF2033	0.19	-0.3
2,062,876	-		GFF2033	0.19	-1.3
2,062,876	-		GFF2033	0.19	+0.1
2,062,876	-		GFF2033	0.19	-2.0
2,062,878	+		GFF2033	0.19	-1.2
2,062,881	-		GFF2033	0.19	-0.1
2,062,894	-		GFF2033	0.20	-2.2
2,062,907	-		GFF2033	0.21	-0.2
2,062,933	+		GFF2033	0.22	+0.7
2,062,935	+		GFF2033	0.22	-0.4
2,062,962	+		GFF2033	0.23	-2.6
2,062,964	+		GFF2033	0.24	-0.1
2,062,964	+		GFF2033	0.24	+1.2
2,062,964	+		GFF2033	0.24	-0.5
2,062,964	+		GFF2033	0.24	-0.3
2,062,964	+		GFF2033	0.24	+0.3
2,062,970	-		GFF2033	0.24	+0.2
2,062,970	-		GFF2033	0.24	+1.9
2,062,972	-		GFF2033	0.24	-0.4
2,062,977	-		GFF2033	0.24	-0.0
2,062,977	-		GFF2033	0.24	-0.0
2,062,997	+		GFF2033	0.25	-1.4
2,063,012	+		GFF2033	0.26	-1.3
2,063,031	-		GFF2033	0.27	-0.6
2,063,036	+		GFF2033	0.27	-0.6
2,063,037	-		GFF2033	0.27	+0.3
2,063,044	-		GFF2033	0.28	-0.7
2,063,077	+		GFF2033	0.29	+0.3
2,063,093	+		GFF2033	0.30	-0.1
2,063,094	+		GFF2033	0.30	-0.2
2,063,101	-		GFF2033	0.31	-1.6
2,063,101	-		GFF2033	0.31	+0.2
2,063,102	-		GFF2033	0.31	-0.7
2,063,102	-		GFF2033	0.31	+0.9
2,063,102	-		GFF2033	0.31	-2.1
2,063,102	-		GFF2033	0.31	-0.7
2,063,102	-		GFF2033	0.31	-0.3
2,063,122	-		GFF2033	0.32	+0.1
2,063,124	+		GFF2033	0.32	-2.1
2,063,128	-		GFF2033	0.32	+0.4
2,063,130	+		GFF2033	0.32	+0.2
2,063,130	+		GFF2033	0.32	-1.7
2,063,130	+		GFF2033	0.32	+0.1
2,063,130	+		GFF2033	0.32	-2.4
2,063,130	+		GFF2033	0.32	-2.3
2,063,130	+		GFF2033	0.32	-0.6
2,063,138	-		GFF2033	0.33	-0.4
2,063,138	-		GFF2033	0.33	-0.9
2,063,138	-		GFF2033	0.33	-2.8
2,063,138	-		GFF2033	0.33	+1.3
2,063,138	-		GFF2033	0.33	-0.4
2,063,138	-		GFF2033	0.33	+0.2
2,063,138	-		GFF2033	0.33	-2.4
2,063,138	-		GFF2033	0.33	-0.7
2,063,138	-		GFF2033	0.33	+0.4
2,063,148	-		GFF2033	0.33	+0.2
2,063,155	+		GFF2033	0.34	-0.3
2,063,157	+		GFF2033	0.34	-0.2
2,063,187	+		GFF2033	0.35	+0.1
2,063,224	+		GFF2033	0.37	+0.7
2,063,226	-		GFF2033	0.37	-0.6
2,063,226	-		GFF2033	0.37	+0.1
2,063,226	-		GFF2033	0.37	-0.2
2,063,277	+		GFF2033	0.40	-1.6
2,063,283	+		GFF2033	0.40	-1.3
2,063,283	+		GFF2033	0.40	+0.1
2,063,288	+		GFF2033	0.41	-0.6
2,063,291	-		GFF2033	0.41	+0.4
2,063,297	+		GFF2033	0.41	-0.3
2,063,298	+		GFF2033	0.41	+0.2
2,063,311	-		GFF2033	0.42	-1.4
2,063,311	-		GFF2033	0.42	-0.4
2,063,313	+		GFF2033	0.42	-0.8
2,063,313	+		GFF2033	0.42	+0.4
2,063,321	-		GFF2033	0.42	-1.7
2,063,321	-		GFF2033	0.42	+1.0
2,063,321	-		GFF2033	0.42	+1.1
2,063,336	-		GFF2033	0.43	-0.3
2,063,341	-		GFF2033	0.43	-2.5
2,063,355	+		GFF2033	0.44	-1.5
2,063,355	+		GFF2033	0.44	-1.4
2,063,370	+		GFF2033	0.45	-1.2
2,063,373	-		GFF2033	0.45	-0.4
2,063,387	+		GFF2033	0.46	-0.4
2,063,389	-		GFF2033	0.46	-0.8
2,063,389	-		GFF2033	0.46	-1.5
2,063,406	-		GFF2033	0.47	-0.1
2,063,419	-		GFF2033	0.47	+0.3
2,063,471	+		GFF2033	0.50	-0.2
2,063,473	-		GFF2033	0.50	+0.1
2,063,475	-		GFF2033	0.50	+0.3
2,063,537	-		GFF2033	0.54	+0.7
2,063,546	-		GFF2033	0.54	-0.8
2,063,575	-		GFF2033	0.56	-1.2
2,063,610	+		GFF2033	0.57	+0.6
2,063,610	+		GFF2033	0.57	+0.6
2,063,610	+		GFF2033	0.57	-2.9
2,063,610	+		GFF2033	0.57	+0.1
2,063,618	-		GFF2033	0.58	+0.5
2,063,618	-		GFF2033	0.58	-0.3
2,063,632	+		GFF2033	0.59	-0.6
2,063,637	+		GFF2033	0.59	-1.6
2,063,637	+		GFF2033	0.59	-1.1
2,063,637	+		GFF2033	0.59	+1.1
2,063,637	+		GFF2033	0.59	-1.0
2,063,637	+		GFF2033	0.59	+0.5
2,063,637	+		GFF2033	0.59	+0.8
2,063,637	+		GFF2033	0.59	-0.9
2,063,640	-		GFF2033	0.59	+0.0
2,063,640	-		GFF2033	0.59	+1.1
2,063,645	-		GFF2033	0.59	+0.2
2,063,645	-		GFF2033	0.59	-0.3
2,063,645	-		GFF2033	0.59	+0.2
2,063,645	-		GFF2033	0.59	-0.3
2,063,645	-		GFF2033	0.59	-0.2
2,063,645	-		GFF2033	0.59	-0.3
2,063,665	+		GFF2033	0.60	+1.4
2,063,673	-		GFF2033	0.61	+0.1
2,063,677	+		GFF2033	0.61	-0.9
2,063,677	+		GFF2033	0.61	-0.1
2,063,685	-		GFF2033	0.61	+1.0
2,063,690	-		GFF2033	0.62	+0.9
2,063,704	+		GFF2033	0.62	-1.5
2,063,704	+		GFF2033	0.62	+0.1
2,063,712	-		GFF2033	0.63	+0.7
2,063,734	+		GFF2033	0.64	-0.9
2,063,743	+		GFF2033	0.64	+0.8
2,063,791	+		GFF2033	0.67	-0.1
2,063,791	+		GFF2033	0.67	+0.5
2,063,794	-		GFF2033	0.67	-1.3
2,063,799	-		GFF2033	0.67	+0.2
2,063,799	-		GFF2033	0.67	-0.5
2,063,803	+		GFF2033	0.68	-0.8
2,063,816	-		GFF2033	0.68	+0.6
2,063,867	-		GFF2033	0.71	-0.8
2,063,927	+		GFF2033	0.74	-0.8
2,063,932	+		GFF2033	0.74	+0.9
2,063,935	-		GFF2033	0.74	+0.8
2,063,957	-		GFF2033	0.76	-1.3
2,063,959	-		GFF2033	0.76	-1.9
2,063,964	+		GFF2033	0.76	+0.2
2,064,006	+		GFF2033	0.78	-0.9
2,064,008	-		GFF2033	0.78	+0.7
2,064,039	+		GFF2033	0.80	-0.0
2,064,051	+		GFF2033	0.81	-1.9
2,064,059	+		GFF2033	0.81	-0.7
2,064,067	-		GFF2033	0.81	-1.0
2,064,067	-		GFF2033	0.81	-0.4
2,064,067	-		GFF2033	0.81	+1.1
2,064,082	+		GFF2033	0.82	+0.2
2,064,082	+		GFF2033	0.82	-1.3
2,064,087	+		GFF2033	0.82	-1.9
2,064,087	+		GFF2033	0.82	-1.0
2,064,090	-		GFF2033	0.83	-0.0
2,064,090	-		GFF2033	0.83	+0.1
2,064,095	-		GFF2033	0.83	-0.8
2,064,095	-		GFF2033	0.83	+0.3
2,064,106	+		GFF2033	0.83	-0.7
2,064,111	+		GFF2033	0.84	+0.8
2,064,111	+		GFF2033	0.84	-0.9
2,064,114	-		GFF2033	0.84	-2.2
2,064,119	-		GFF2033	0.84	-2.5
2,064,119	-		GFF2033	0.84	+0.4
2,064,119	-		GFF2033	0.84	+0.9
2,064,138	-		GFF2033	0.85	-0.8
2,064,155	+		GFF2033	0.86	-1.3
2,064,155	-		GFF2033	0.86	-0.4
2,064,192	-		GFF2033	0.88	-0.3
2,064,225	+		GFF2033	0.90	-1.4
2,064,225	+		GFF2033	0.90	+0.8
2,064,225	+		GFF2033	0.90	+0.3
2,064,225	+		GFF2033	0.90	-0.5
2,064,225	+		GFF2033	0.90	-0.7
2,064,227	+		GFF2033	0.90	-0.1
2,064,233	-				+0.2
2,064,233	-				-0.1
2,064,233	-				-0.5
2,064,233	-				+0.2
2,064,233	-				+1.3
2,064,233	-				+0.0
2,064,233	-				-2.7
2,064,233	-				-0.5
2,064,233	-				+0.5
2,064,233	-				-0.1
2,064,233	-				-0.5
2,064,233	-				-0.5
2,064,233	-				-3.0
2,064,233	-				-1.2
2,064,250	-				-0.3
2,064,257	+				-0.7
2,064,276	+				+0.2
2,064,283	-				+0.2
2,064,304	+				+1.5
2,064,330	+				-0.6
2,064,334	+				+0.1
2,064,335	+				-1.5
2,064,335	+				-1.6
2,064,335	+				-1.7
2,064,335	+				-1.7
2,064,340	+				-0.4
2,064,343	-				-0.4
2,064,343	-				-1.0
2,064,343	-				-0.9
2,064,343	-				-0.8
2,064,343	-				+0.9
2,064,343	-				+1.1
2,064,343	-				-0.7
2,064,343	-				-1.7
2,064,353	-				+0.1
2,064,398	+				+0.4
2,064,399	+				-1.0
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